MQanalyser

The goal of MQanalyser is to provide the user an interface to interactively analyse their Proteomics LC-MS/MS output.

Installation

You can install it from GitHub with:

# install.packages("devtools")
devtools::install_github("svalvaro/MQanalyser")

You can access to the web application through: https://proteomics.fgu.cas.cz/ProteoAnalyser/

To run it locally:

library(MQanalyser)

appDir <- system.file("shiny_app", package = "MQanalyser")
shiny::runApp(appDir)

This is how it should look like when you have uploaded your proteinGroups.txt and the experiment design. Just press Start Analysis… and Enjoy!