From 7a79be053c0ac65e6a75e9dc42384fd47cf1a4d5 Mon Sep 17 00:00:00 2001
From: Vladimir Polony <podalv@gmail.com>
Date: Thu, 19 Dec 2024 09:09:29 -0800
Subject: [PATCH] Removed unused files (#8)

---
 .../server/api/MultipleQueryRunner.java       | 61 -------------------
 src/com/podalv/search/server/api/Test.java    | 18 ------
 2 files changed, 79 deletions(-)
 delete mode 100644 src/com/podalv/search/server/api/MultipleQueryRunner.java
 delete mode 100755 src/com/podalv/search/server/api/Test.java

diff --git a/src/com/podalv/search/server/api/MultipleQueryRunner.java b/src/com/podalv/search/server/api/MultipleQueryRunner.java
deleted file mode 100644
index 9d77dfb..0000000
--- a/src/com/podalv/search/server/api/MultipleQueryRunner.java
+++ /dev/null
@@ -1,61 +0,0 @@
-package com.podalv.search.server.api;
-
-import java.io.*;
-import java.util.Iterator;
-import java.util.regex.Pattern;
-
-import com.podalv.search.server.api.datastructures.PatientId;
-
-/** Runs a list of queries and stores patient counts in a file
- * 
- */
-public class MultipleQueryRunner {
-
-  public static void main(final String[] args) throws IOException {
-    System.out.println("Usage: URL variables_file query_file output_file");
-    System.out.println();
-    System.out.println("Format of the query file:");
-    System.out.println("IDENTIFIER\tquery");
-    String line;
-    final AtlasConnection connection = new AtlasConnection(args[0]);
-    if (!connection.test()) {
-      System.out.println("Cannot connect to '" + args[0]);
-      System.exit(1);
-    }
-    final StringBuilder variables = new StringBuilder();
-    BufferedReader reader = new BufferedReader(new FileReader(args[1]));
-    while ((line = reader.readLine()) != null) {
-      variables.append(line + "\n");
-    }
-    reader.close();
-    final BufferedWriter result = new BufferedWriter(new FileWriter(args[3]));
-    reader = new BufferedReader(new FileReader(args[2]));
-    while ((line = reader.readLine()) != null) {
-      final String[] data = line.split(Pattern.quote("\t"));
-      if (data.length != 2) {
-        System.out.println("Ignoring line '" + line + "'");
-      }
-      else {
-        System.out.print("Processing " + data[0]);
-        long cnt = 0;
-        try {
-          final Iterator<PatientId> resp = connection.getPatientIds(variables.toString() + "\n" + data[1]);
-          while (resp.hasNext()) {
-            resp.next();
-            cnt++;
-          }
-        }
-        catch (final Exception e) {
-          System.out.print(" ERROR " + e.getMessage());
-          result.write(data[0] + "\t" + "error '" + e.getMessage() + "'\n");
-        }
-        System.out.print(" result = " + cnt);
-        result.write(data[0] + "\t" + cnt + "\n");
-        System.out.println();
-      }
-    }
-    reader.close();
-    result.close();
-  }
-
-}
diff --git a/src/com/podalv/search/server/api/Test.java b/src/com/podalv/search/server/api/Test.java
deleted file mode 100755
index 4808d70..0000000
--- a/src/com/podalv/search/server/api/Test.java
+++ /dev/null
@@ -1,18 +0,0 @@
-package com.podalv.search.server.api;
-
-import java.io.File;
-import java.io.IOException;
-
-import com.google.gson.JsonSyntaxException;
-import com.podalv.search.server.api.exceptions.QueryException;
-
-public class Test {
-
-  public static void main(final String[] args) throws IOException, JsonSyntaxException, QueryException {
-    final AtlasConnection connection = new AtlasConnection("http://localhost:8080");
-    System.out.println(connection.test());
-    connection.getFile("ICD9=250.50", new File("/home/podalv/test.txt"));
-    connection.getFile("ICD9=250", new File("/home/podalv/test2.txt"));
-    connection.getFile("ICD9=249", new File("/home/podalv/test3.txt"));
-  }
-}
\ No newline at end of file