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pyproject.toml
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[build-system]
build-backend = "poetry.masonry.api"
requires = ["poetry>=1.0.5"]
[tool.poetry]
authors = [
"Clay Mcleod <[email protected]>",
"Jobin Sunny <[email protected]>",
"Andrew Thrasher <[email protected]>",
"Andrew Frantz <[email protected]",
]
classifiers = [
"Programming Language :: Python :: 3",
"Operating System :: OS Independent",
"Development Status :: 5 - Production/Stable",
"Topic :: Scientific/Engineering :: Bio-Informatics",
]
description = "An opinionated Cromwell orchestration system"
documentation = "https://stjudecloud.github.io/oliver/"
homepage = "https://stjudecloud.github.io/oliver/"
include = ["*.txt", "*.md"]
keywords = ["bioinformatics", "genomics", "workflows", "cromwell"]
license = "MIT"
name = "stjudecloud-oliver"
packages = [{ include = "oliver" }]
readme = "README.md"
repository = "https://github.com/stjudecloud/oliver"
version = "1.4.11"
[tool.poetry.scripts]
oliver = "oliver.__main__:main"
[tool.poetry.dependencies]
aiohttp = "^3.8"
azure-cosmos = "^4.3"
boto3 = "^1.26"
logzero = "^1.7"
mypy-boto3 = { extras = ["batch", "logs"], version = "^1.26" }
mypy_boto3_batch = "^1.26"
mypy_boto3_logs = "^1.26"
pendulum = "^2.1"
python = "^3.9"
requests = "^2.28"
tabulate = "^0.9"
typed-ast = "^1.5"
tzlocal = "<3.0.0"
[tool.poetry.dev-dependencies]
black = "^23"
boto3-stubs = "^1.26"
mkdocs = "^1.4"
mkdocs-bootswatch = "^1.1"
mypy = "0.910"
pydocstyle = "^6.3"
pylint = "^2"
pytest = "^7.2"
pytest-asyncio = "^0.21"
pytest-cov = "^4"
python-semantic-release = "^7.33"
rope = "^1.7"
types-tabulate = "^0.9"
[tool.semantic_release]
build_command = "poetry build"
commit_author = "St. Jude Cloud <[email protected]>"
commit_message = ""
commit_subject = "chore: bumping version to v{version}"
upload_to_release = "false"
version_source = "commit"
version_variable = "pyproject.toml:version"
# check_build_status = true
[tool.black]
exclude = '''
/(
\.eggs
| \.git
| \.hg
| \.mypy_cache
| \.tox
| \.venv
| _build
| buck-out
| build
| dist
| __pycache__
| .*egg-info
)/
'''
include = '\.pyi?$'
target-version = ['py36', 'py37', 'py38']