From 4abef959f26de5451b3f8ef32f76d5138fd34094 Mon Sep 17 00:00:00 2001
From: Andrew Thrasher <adthrasher@gmail.com>
Date: Fri, 2 Jul 2021 08:35:09 -0400
Subject: [PATCH] Bump to version 3.1.4

---
 dx_app/dxapp.json        |  2 +-
 wdl/tools/xenocp.wdl     | 18 +++++++++---------
 wdl/workflows/xenocp.wdl |  2 +-
 3 files changed, 11 insertions(+), 11 deletions(-)

diff --git a/dx_app/dxapp.json b/dx_app/dxapp.json
index 0c9b0a8..ee9edbb 100644
--- a/dx_app/dxapp.json
+++ b/dx_app/dxapp.json
@@ -3,7 +3,7 @@
   "title": "XenoCP (St. Jude)",
   "summary": "Xenograft sample cleaning pipeline",
   "dxapi": "1.0.0",
-  "version": "3.0.0",
+  "version": "3.1.4",
   "openSource": true,
   "developers": ["user-lding", "user-mrusch", "user-athrashe"],
   "authorizedUsers": [
diff --git a/wdl/tools/xenocp.wdl b/wdl/tools/xenocp.wdl
index 3d1d5e9..d1e2232 100644
--- a/wdl/tools/xenocp.wdl
+++ b/wdl/tools/xenocp.wdl
@@ -35,7 +35,7 @@ task get_chroms {
         memory: memory_gb + " GB"
         disk: disk_size + " GB"
         cpu: ncpu
-        docker: 'stjude/xenocp:3.1.0'
+        docker: 'stjude/xenocp:3.1.4'
         maxRetries: max_retries
     }
 
@@ -78,7 +78,7 @@ task extract_mismatch {
         memory: memory_gb + " GB"
         disk: disk_size + " GB"
         cpu: 1
-        docker: 'stjude/xenocp:3.1.0'
+        docker: 'stjude/xenocp:3.1.4'
         maxRetries: max_retries
     }
 
@@ -122,7 +122,7 @@ task extract_by_chrom {
         memory: memory_gb + " GB"
         disk: disk_size + " GB"
         cpu: 1
-        docker: 'stjude/xenocp:3.1.0'
+        docker: 'stjude/xenocp:3.1.4'
         maxRetries: max_retries
     }
 
@@ -175,7 +175,7 @@ task extract_unmapped {
         memory: memory_gb + " GB"
         disk: disk_size + " GB"
         cpu: ncpu
-        docker: 'stjude/xenocp:3.1.0'
+        docker: 'stjude/xenocp:3.1.4'
         maxRetries: max_retries
     }
 
@@ -217,7 +217,7 @@ task mapped_fastq {
         memory: memory_gb + " GB"
         disk: disk_size + " GB"
         cpu: 1
-        docker: 'stjude/xenocp:3.1.0'
+        docker: 'stjude/xenocp:3.1.4'
         maxRetries: max_retries
     }
 
@@ -262,7 +262,7 @@ task create_contam_list {
         memory: memory_gb + " GB"
         disk: disk_size + " GB"
         cpu: 1
-        docker: 'stjude/xenocp:3.1.0'
+        docker: 'stjude/xenocp:3.1.4'
         maxRetries: max_retries
     }
 
@@ -311,7 +311,7 @@ task cleanse {
         memory: memory_gb + " GB"
         disk: disk_size + " GB"
         cpu: 1
-        docker: 'stjude/xenocp:3.1.0'
+        docker: 'stjude/xenocp:3.1.4'
         maxRetries: max_retries
     }
 
@@ -361,7 +361,7 @@ task merge_markdup_index {
         memory: memory_gb + " GB"
         disk: disk_size + " GB"
         cpu: 1
-        docker: 'stjude/xenocp:3.1.0'
+        docker: 'stjude/xenocp:3.1.4'
         maxRetries: max_retries
     }
 
@@ -409,7 +409,7 @@ task qc {
         memory: memory_gb + " GB"
         disk: disk_size + " GB"
         cpu: ncpu
-        docker: 'stjude/xenocp:3.1.0'
+        docker: 'stjude/xenocp:3.1.4'
         maxRetries: max_retries
     }
 
diff --git a/wdl/workflows/xenocp.wdl b/wdl/workflows/xenocp.wdl
index 6b1ad6f..cc27a6b 100644
--- a/wdl/workflows/xenocp.wdl
+++ b/wdl/workflows/xenocp.wdl
@@ -27,7 +27,7 @@
 
 version 1.0
 
-import "https://raw.githubusercontent.com/stjude/xenocp/3.1.3/wdl/tools/xenocp.wdl" as xenocp_tools
+import "https://raw.githubusercontent.com/stjude/xenocp/3.1.4/wdl/tools/xenocp.wdl" as xenocp_tools
 import "https://raw.githubusercontent.com/stjudecloud/workflows/rnaseq-standard/v3.0.0/tools/bwa.wdl"
 import "https://raw.githubusercontent.com/stjudecloud/workflows/rnaseq-standard/v3.0.0/tools/star.wdl"
 import "https://raw.githubusercontent.com/stjudecloud/workflows/rnaseq-standard/v3.0.0/tools/picard.wdl"