{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":170884931,"defaultBranch":"main","name":"XenoCP","ownerLogin":"stjude","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2019-02-15T15:20:47.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/4733418?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1701180193.0","currentOid":""},"activityList":{"items":[{"before":"68d63faefdb39aef90a34520f1f3f0f3b91449e0","after":null,"ref":"refs/heads/fixes_cwl","pushedAt":"2023-11-28T14:03:13.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"adthrasher","name":"Andrew Thrasher","path":"/adthrasher","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1165729?s=80&v=4"}},{"before":"c3f152078b47d05f24cc534113e57dbf38ceea07","after":"e1c7539aa587a28db9b97b43f6b78e7315fa2fbf","ref":"refs/heads/main","pushedAt":"2023-11-28T14:03:09.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"adthrasher","name":"Andrew Thrasher","path":"/adthrasher","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1165729?s=80&v=4"},"commit":{"message":"Recent Issues (#49)\n\n* Remove old sample output. Update sample output. Add Docker hints. Remove ENTRYPOINT.\r\n\r\n* fix: Update md5 for tie bam\r\n\r\n* bump star version. improve star script.\r\n\r\n* docs: add WDL. Add singularity. general updates.\r\n\r\n* bump bwa to match workflows","shortMessageHtmlLink":"Recent Issues (#49)"}},{"before":"da52cb94635870b04480b5b6aecdab8d9efc02a4","after":"68d63faefdb39aef90a34520f1f3f0f3b91449e0","ref":"refs/heads/fixes_cwl","pushedAt":"2023-11-22T19:41:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"adthrasher","name":"Andrew Thrasher","path":"/adthrasher","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1165729?s=80&v=4"},"commit":{"message":"bump bwa to match workflows","shortMessageHtmlLink":"bump bwa to match workflows"}},{"before":"5300d88c8b3a19c2020dffa5cb66d52a6f287f4b","after":"da52cb94635870b04480b5b6aecdab8d9efc02a4","ref":"refs/heads/fixes_cwl","pushedAt":"2023-11-21T19:06:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"adthrasher","name":"Andrew Thrasher","path":"/adthrasher","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1165729?s=80&v=4"},"commit":{"message":"docs: add WDL. Add singularity. general updates.","shortMessageHtmlLink":"docs: add WDL. Add singularity. general updates."}},{"before":"9d0f85b05e65ab31e6e910d23b66b72809add0c4","after":"5300d88c8b3a19c2020dffa5cb66d52a6f287f4b","ref":"refs/heads/fixes_cwl","pushedAt":"2023-11-20T21:28:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"adthrasher","name":"Andrew Thrasher","path":"/adthrasher","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1165729?s=80&v=4"},"commit":{"message":"bump star version. improve star script.","shortMessageHtmlLink":"bump star version. improve star script."}},{"before":"560b8ec6bf93ef885e789316de92fd4817da790b","after":null,"ref":"refs/heads/bugfix/45-tie-bam-is-too-large","pushedAt":"2023-11-20T17:58:46.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"mcrusch","name":null,"path":"/mcrusch","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32969618?s=80&v=4"}},{"before":"f2a137219c5e23681c34597a765b93b620d92100","after":"9d0f85b05e65ab31e6e910d23b66b72809add0c4","ref":"refs/heads/fixes_cwl","pushedAt":"2023-11-20T15:39:59.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"adthrasher","name":"Andrew Thrasher","path":"/adthrasher","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1165729?s=80&v=4"},"commit":{"message":"fix: Update md5 for tie bam","shortMessageHtmlLink":"fix: Update md5 for tie bam"}},{"before":"6fc7f04fd859327baf1b66f617fbf60c8c832e5f","after":null,"ref":"refs/heads/feature/gradle7","pushedAt":"2023-11-20T15:34:17.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"mcrusch","name":null,"path":"/mcrusch","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32969618?s=80&v=4"}},{"before":"560b8ec6bf93ef885e789316de92fd4817da790b","after":"c3f152078b47d05f24cc534113e57dbf38ceea07","ref":"refs/heads/main","pushedAt":"2023-11-20T15:34:12.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"mcrusch","name":null,"path":"/mcrusch","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32969618?s=80&v=4"},"commit":{"message":"Fixed local build and upgraded to gradle 7. (#50)\n\nThis included upgrading the gradle build to gradle 7, and adding the\r\ngradle wrappers.\r\n\r\nNote: java.sh and picard had to be updated to accommodate the fact that\r\nwe have a monolithic picard jar in the Docker image, but a lite picard\r\njar with separate htsjdk for local use.","shortMessageHtmlLink":"Fixed local build and upgraded to gradle 7. (#50)"}},{"before":null,"after":"560b8ec6bf93ef885e789316de92fd4817da790b","ref":"refs/heads/bugfix/45-tie-bam-is-too-large","pushedAt":"2023-11-17T22:12:12.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mcrusch","name":null,"path":"/mcrusch","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32969618?s=80&v=4"},"commit":{"message":"Add build.gradle version update (#47)","shortMessageHtmlLink":"Add build.gradle version update (#47)"}},{"before":"560b8ec6bf93ef885e789316de92fd4817da790b","after":null,"ref":"refs/heads/bugfix/45-tie-bam-is-too-large","pushedAt":"2023-11-17T22:12:10.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"mcrusch","name":null,"path":"/mcrusch","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32969618?s=80&v=4"}},{"before":null,"after":"6fc7f04fd859327baf1b66f617fbf60c8c832e5f","ref":"refs/heads/feature/gradle7","pushedAt":"2023-11-17T22:02:57.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mcrusch","name":null,"path":"/mcrusch","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32969618?s=80&v=4"},"commit":{"message":"Fixed local build.\n\nThis included upgrading the gradle build to gradle 7, and adding the\ngradle wrappers.\n\nNote: java.sh and picard had to be updated to accommodate the fact that\nwe have a monolithic picard jar in the Docker image, but a lite picard\njar with separate htsjdk for local use.","shortMessageHtmlLink":"Fixed local build."}},{"before":"ec820d6c59bb81aa15946c00c9dd28d73d1c86e7","after":"f2a137219c5e23681c34597a765b93b620d92100","ref":"refs/heads/fixes_cwl","pushedAt":"2023-11-17T21:05:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"adthrasher","name":"Andrew Thrasher","path":"/adthrasher","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1165729?s=80&v=4"},"commit":{"message":"fix: Update md5 for tie bam","shortMessageHtmlLink":"fix: Update md5 for tie bam"}},{"before":null,"after":"ec820d6c59bb81aa15946c00c9dd28d73d1c86e7","ref":"refs/heads/fixes_cwl","pushedAt":"2023-11-17T21:01:58.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"adthrasher","name":"Andrew Thrasher","path":"/adthrasher","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1165729?s=80&v=4"},"commit":{"message":"Remove old sample output. Update sample output. Add Docker hints. Remove ENTRYPOINT.","shortMessageHtmlLink":"Remove old sample output. Update sample output. Add Docker hints. Rem…"}},{"before":null,"after":"560b8ec6bf93ef885e789316de92fd4817da790b","ref":"refs/heads/bugfix/45-tie-bam-is-too-large","pushedAt":"2023-11-17T19:19:49.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mcrusch","name":null,"path":"/mcrusch","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32969618?s=80&v=4"},"commit":{"message":"Add build.gradle version update (#47)","shortMessageHtmlLink":"Add build.gradle version update (#47)"}},{"before":"f1de945814e40b4135d21999b98539f323f7b745","after":null,"ref":"refs/heads/release_update","pushedAt":"2023-11-17T15:38:22.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"adthrasher","name":"Andrew Thrasher","path":"/adthrasher","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1165729?s=80&v=4"}},{"before":"beb0d8bfb16a4bf41e1bae7f9d2e6a2b62a5675f","after":"560b8ec6bf93ef885e789316de92fd4817da790b","ref":"refs/heads/main","pushedAt":"2023-11-17T15:38:18.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"adthrasher","name":"Andrew Thrasher","path":"/adthrasher","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1165729?s=80&v=4"},"commit":{"message":"Add build.gradle version update (#47)","shortMessageHtmlLink":"Add build.gradle version update (#47)"}},{"before":null,"after":"f1de945814e40b4135d21999b98539f323f7b745","ref":"refs/heads/release_update","pushedAt":"2023-11-17T14:36:56.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"adthrasher","name":"Andrew Thrasher","path":"/adthrasher","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1165729?s=80&v=4"},"commit":{"message":"Add build.gradle version update","shortMessageHtmlLink":"Add build.gradle version update"}},{"before":"c36ebb070c27f45ea83e185dd10c1abb00564c5e","after":null,"ref":"refs/heads/singularity_compatibility","pushedAt":"2023-11-06T20:23:58.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"adthrasher","name":"Andrew Thrasher","path":"/adthrasher","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1165729?s=80&v=4"}},{"before":"8e0b6bc86c199a4e81f5db5771a108920f2c5c62","after":"beb0d8bfb16a4bf41e1bae7f9d2e6a2b62a5675f","ref":"refs/heads/main","pushedAt":"2023-11-06T20:23:54.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"adthrasher","name":"Andrew Thrasher","path":"/adthrasher","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1165729?s=80&v=4"},"commit":{"message":"fix: remove root dependency (#40)\n\n* fix: remove root dependency\r\n\r\n* build: add GHCR to dev builds","shortMessageHtmlLink":"fix: remove root dependency (#40)"}},{"before":"5a178f8eada8d7d9fb178884ca7b7b6950d644be","after":"c36ebb070c27f45ea83e185dd10c1abb00564c5e","ref":"refs/heads/singularity_compatibility","pushedAt":"2023-11-06T20:01:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"adthrasher","name":"Andrew Thrasher","path":"/adthrasher","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1165729?s=80&v=4"},"commit":{"message":"build: add GHCR to dev builds","shortMessageHtmlLink":"build: add GHCR to dev builds"}},{"before":null,"after":"5a178f8eada8d7d9fb178884ca7b7b6950d644be","ref":"refs/heads/singularity_compatibility","pushedAt":"2023-11-06T19:46:26.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"adthrasher","name":"Andrew Thrasher","path":"/adthrasher","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1165729?s=80&v=4"},"commit":{"message":"fix: remove root dependency","shortMessageHtmlLink":"fix: remove root dependency"}},{"before":"5cd861cb820226f1b6bb5728b7aa0157b875eabd","after":null,"ref":"refs/tags/3.1.1","pushedAt":"2023-06-27T19:59:04.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"adthrasher","name":"Andrew Thrasher","path":"/adthrasher","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1165729?s=80&v=4"}},{"before":null,"after":"ebaff6a83c654dc4127d96585df536e40854ed87","ref":"refs/heads/3.1.1_fix","pushedAt":"2023-06-27T19:57:13.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"adthrasher","name":"Andrew Thrasher","path":"/adthrasher","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1165729?s=80&v=4"},"commit":{"message":"Fix imports for 3.1.1 of XenoCP","shortMessageHtmlLink":"Fix imports for 3.1.1 of XenoCP"}},{"before":null,"after":"a44d19bb1a1b1028fcc51a99b6caa1ac996e5d97","ref":"refs/heads/header_fix","pushedAt":"2023-05-24T12:49:57.170Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"adthrasher","name":"Andrew Thrasher","path":"/adthrasher","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1165729?s=80&v=4"},"commit":{"message":"fix: Rewrite BAM header","shortMessageHtmlLink":"fix: Rewrite BAM header"}},{"before":"4abef959f26de5451b3f8ef32f76d5138fd34094","after":"c45f88d405bb95b1bd0513ccaf4484e92a8be7dc","ref":"refs/heads/release","pushedAt":"2023-05-10T14:08:22.000Z","pushType":"push","commitsCount":10,"pusher":{"login":"adthrasher","name":"Andrew Thrasher","path":"/adthrasher","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1165729?s=80&v=4"},"commit":{"message":"Prepare 4.0.0.-alpha release","shortMessageHtmlLink":"Prepare 4.0.0.-alpha release"}},{"before":"d3af10393bd6b38a9f0e510a62a1a925eb0bd089","after":null,"ref":"refs/heads/star_upgrade","pushedAt":"2023-05-10T13:54:58.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"adthrasher","name":"Andrew Thrasher","path":"/adthrasher","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1165729?s=80&v=4"}},{"before":"addfab573b7661301cc0f21e9c3d0bc32fed5466","after":"8e0b6bc86c199a4e81f5db5771a108920f2c5c62","ref":"refs/heads/main","pushedAt":"2023-05-10T13:54:55.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"adthrasher","name":"Andrew Thrasher","path":"/adthrasher","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1165729?s=80&v=4"},"commit":{"message":"Point to updated STAR release (#37)","shortMessageHtmlLink":"Point to updated STAR release (#37)"}},{"before":null,"after":"d3af10393bd6b38a9f0e510a62a1a925eb0bd089","ref":"refs/heads/star_upgrade","pushedAt":"2023-05-10T13:00:41.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"adthrasher","name":"Andrew Thrasher","path":"/adthrasher","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1165729?s=80&v=4"},"commit":{"message":"Point to updated STAR release","shortMessageHtmlLink":"Point to updated STAR release"}},{"before":"f8d74654fa7cf760ef8fe5b64a3e02d6c5e393d8","after":"75d6a1fece7f1a64c712af2dd802e734eaec5e6d","ref":"refs/heads/feature/update-loadable-refs-to-read_group","pushedAt":"2023-03-07T22:26:52.089Z","pushType":"push","commitsCount":1,"pusher":{"login":"mellypop","name":"Melody Williams","path":"/mellypop","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3443303?s=80&v=4"},"commit":{"message":"Format query cleanly","shortMessageHtmlLink":"Format query cleanly"}}],"hasNextPage":false,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"startCursor":"Y3Vyc29yOnYyOpK7MjAyMy0xMS0yOFQxNDowMzoxMy4wMDAwMDBazwAAAAO537s1","endCursor":"Y3Vyc29yOnYyOpK7MjAyMy0wMy0wN1QyMjoyNjo1Mi4wODk1MjJazwAAAAL-lUkr"}},"title":"Activity · stjude/XenoCP"}