Running ABC and compiler issue

[dth2]

I thought I posted this issue yesterday but since I don't see it I am assuming I forgot to submit it, but if this a duplicate I apologize.

I am trying to run an ABC on hyak using EasyABC. However that package requires the locfit package which I can't get to install. I have tried installing from Cran, github, using devtools, remotes, and installing from the tar.gz. Nothing works. From all of the searches I have done the best explanation I can find is that the culprit in the default compiler on hyak. I can install the package on the CSDE system and locally with no problem so I think this is probably the source of the problem. This is a bit out of my lane so any suggestions would be appreciated.

Is there a way to change the compiler that is being used?

[EmilyPo]

Wish I could help you out here but I literally haven’t used Hyak in years so I can’t help with the compiler issue.

…

On Jul 29, 2020, at 10:44 AM, dth2 ***@***.***> wrote: Assigned #6 <#6> to @EmilyPo <https://github.com/EmilyPo>. — You are receiving this because you were assigned. Reply to this email directly, view it on GitHub <#6 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AD6YCJHTEVMLJA6HNIR4OS3R6BNYZANCNFSM4PL3GM6Q>.

[chad-klumb]

I've never used Hyak so I can't help with anything Hyak-specific.

Is there an error message (or messages) from the attempted install(s) of locfit you can share?

[smjenness]

@AdrienLeGuillou : can you help Deven here please.

[AdrienLeGuillou]

Hi @dth2, what error are you getting and what version of R are you using?

I use the following script to load the R module (on a project where I use EpiABC)

#!/bin/bash

. /gscratch/csde/spack/spack/share/spack/setup-env.sh
module load r-4.0.0-gcc-9.2.0-p7wezul

can you try with it?

[dth2]

This works. Thanks so much.

-D

[martinamorris]

I use the following script to load the R module (on a project where I use EpiABC) #!/bin/bash . /gscratch/csde/spack/spack/share/spack/setup-env.sh module load r-4.0.0-gcc-9.2.0-p7wezul can you try with it?

worth adding to the wiki?

[AdrienLeGuillou]

@martinamorris I think it is. @smjenness, should I put it in the "build" folder of the "computing" repo where you treat the building of the R process? Otherwise, I can work on a "hyak" subfolder on with a README with the steps to follow to work with R on hyak

[martinamorris]

Categories are the Achilles heel of the wiki... But I vote for this: https://github.com/statnet/computing/wiki/build

Maybe you're working on that now? It's showing the the TOC, but empty.

[AdrienLeGuillou]

@martinamorris, I was thinking about the folder. But you are right, the wiki is the way to go.