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(>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] +enabler = ["pytest-enabler (>=2.2)"] +test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-ignore-flaky"] +type = ["pytest-mypy"] [metadata] lock-version = "2.0" python-versions = ">=3.10, <3.13" -content-hash = "4d3dd53060f0b460d86e2e59169482171501ef81dd5da6fe2243d6af8653ca75" +content-hash = "888fdafafc099ad0096a0a6b25af6cc86a3b1d1442b335b810c0b19a670f5d0f" diff --git a/pyproject.toml b/pyproject.toml index b82695d1..e935a8c4 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -36,6 +36,9 @@ pyarrow = ">=14.0.2, <15" orjson = "^3.10.1" wcmatch = "^8.5.1" msgspec = ">=0.18.6" +aiohttp = ">=3.10.5" +aiohttp-retry = ">=2.9.1" +pytest-asyncio = "^0.24.0" [tool.poetry.group.test.dependencies] typeguard = ">=2.13.3" diff --git a/src/dapla_pseudo/globberator/traverser.py b/src/dapla_pseudo/globberator/traverser.py index 8f158f3d..0bea95e4 100644 --- a/src/dapla_pseudo/globberator/traverser.py +++ b/src/dapla_pseudo/globberator/traverser.py @@ -35,7 +35,7 @@ def from_path(schema_path: str, rules_path: str) -> "SchemaTraverser": def write_rules(file_path: str, rules: list[PseudoRule]) -> None: """Write rules to file.""" opener = GCSFileSystem.open if file_path.startswith("gs://") else open - with opener(file_path) as rules_file: + with opener(file_path, mode="wb") as rules_file: rules_file.write(msgspec.json.encode(rules)) def match_rules(self, separator: str = "/") -> list[PseudoRule]: diff --git a/src/dapla_pseudo/v1/baseclasses.py b/src/dapla_pseudo/v1/baseclasses.py index c11bf236..cb4b8ea5 100644 --- a/src/dapla_pseudo/v1/baseclasses.py +++ b/src/dapla_pseudo/v1/baseclasses.py @@ -5,16 +5,13 @@ and descriptive than the user-friendly methods that are exposed. """ +import asyncio import json import os -from concurrent.futures import ThreadPoolExecutor -from concurrent.futures import as_completed from datetime import date from typing import cast -import msgspec import polars as pl -import requests from dapla_pseudo.constants import Env from dapla_pseudo.constants import MapFailureStrategy @@ -127,56 +124,23 @@ def _pseudonymize_field( ) -> PseudoFieldResponse: """Pseudonymizes the specified fields in the DataFrame using the provided pseudonymization function. - The pseudonymization is performed in parallel. After the parallel processing is finished, + The pseudonymization is performed concurrently. After the processing is finished, the pseudonymized fields replace the original fields in the DataFrame stored in `self._dataframe`. """ - - def pseudonymize_field_runner( - request: PseudoFieldRequest | DepseudoFieldRequest | RepseudoFieldRequest, - ) -> tuple[str, list[str], RawPseudoMetadata]: - """Function that performs the pseudonymization on a Polars Series.""" - if ( - type(request) == PseudoFieldRequest - and request.pseudo_func.function_type == PseudoFunctionTypes.REDACT - ): - ## If we redact, we do this inside this library - ## to avoid making API calls towards Pseudo Service - name, data, metadata = _BasePseudonymizer._redact_field(request) - return name, data, metadata - - else: - response: requests.Response = ( - self._pseudo_client._post_to_field_endpoint( - f"{self._pseudo_operation.value}/field", - request, - timeout, - stream=True, - ) - ) - payload = msgspec.json.decode(response.content.decode("utf-8")) - data = payload["data"] - metadata = RawPseudoMetadata( - field_name=request.name, - logs=payload["logs"], - metrics=payload["metrics"], - datadoc=payload["datadoc_metadata"]["pseudo_variables"], - ) - - return request.name, data, metadata - # type narrowing isn't carried over from caller function assert isinstance(self._dataset, MutableDataFrame) # Execute the pseudonymization API calls in parallel - with ThreadPoolExecutor() as executor: - raw_metadata_fields: list[RawPseudoMetadata] = [] - futures = [ - executor.submit(pseudonymize_field_runner, request) - for request in pseudo_requests - ] - for future in as_completed(futures): - field_name, data, raw_metadata = future.result() - self._dataset.update(field_name, data) - raw_metadata_fields.append(raw_metadata) + + raw_metadata_fields: list[RawPseudoMetadata] = [] + for field_name, data, raw_metadata in asyncio.run( + self._pseudo_client.post_to_field_endpoint( + path=f"{self._pseudo_operation.value}/field", + timeout=timeout, + pseudo_requests=pseudo_requests, + ) + ): + self._dataset.update(field_name, data) + raw_metadata_fields.append(raw_metadata) return PseudoFieldResponse( data=self._dataset.to_polars(), raw_metadata=raw_metadata_fields diff --git a/src/dapla_pseudo/v1/client.py b/src/dapla_pseudo/v1/client.py index a486588b..711b6154 100644 --- a/src/dapla_pseudo/v1/client.py +++ b/src/dapla_pseudo/v1/client.py @@ -1,5 +1,6 @@ """Module that implements a client abstraction that makes it easy to communicate with the Dapla Pseudo Service REST API.""" +import asyncio import os import typing as t from datetime import date @@ -7,6 +8,11 @@ import google.auth.transport.requests import google.oauth2.id_token import requests +from aiohttp import ClientResponse +from aiohttp import ClientSession +from aiohttp import TCPConnector +from aiohttp_retry import ExponentialRetry +from aiohttp_retry import RetryClient from dapla import AuthClient from ulid import ULID @@ -15,6 +21,7 @@ from dapla_pseudo.types import FileSpecDecl from dapla_pseudo.v1.models.api import DepseudoFieldRequest from dapla_pseudo.v1.models.api import PseudoFieldRequest +from dapla_pseudo.v1.models.api import RawPseudoMetadata from dapla_pseudo.v1.models.api import RepseudoFieldRequest from dapla_pseudo.v1.models.core import Mimetypes @@ -51,13 +58,87 @@ def __auth_token(self) -> str: else str(self.static_auth_token) ) + async def post_to_field_endpoint( + self, + path: str, + timeout: int, + pseudo_requests: list[ + PseudoFieldRequest | DepseudoFieldRequest | RepseudoFieldRequest + ], + ) -> list[tuple[str, list[str], RawPseudoMetadata]]: + """Post a request to the Pseudo Service field endpoint. + + Args: + path (str): Full URL to the endpoint + timeout (int): Request timeout + pseudo_requests: Pseudo requests + + Returns: + list[tuple[str, list[str], RawPseudoMetadata]]: A list of tuple of (field_name, data, metadata) + """ + + async def _post( + client: RetryClient, + path: str, + timeout: int, + request: PseudoFieldRequest | DepseudoFieldRequest | RepseudoFieldRequest, + ) -> tuple[str, list[str], RawPseudoMetadata]: + async with client.post( + url=f"{self.pseudo_service_url}/{path}", + headers={ + "Authorization": f"Bearer {self.__auth_token()}", + "Content-Type": Mimetypes.JSON.value, + "X-Correlation-Id": PseudoClient._generate_new_correlation_id(), + }, + json={"request": request.model_dump(by_alias=True)}, + timeout=timeout, + ) as response: + await PseudoClient._handle_response_error(response) + response_json = await response.json() + data = response_json["data"] + metadata = RawPseudoMetadata( + field_name=request.name, + logs=response_json["logs"], + metrics=response_json["metrics"], + datadoc=response_json["datadoc_metadata"]["pseudo_variables"], + ) + + return request.name, data, metadata + + aio_session = ClientSession(connector=TCPConnector(limit=200)) + async with RetryClient( + client_session=aio_session, + retry_options=ExponentialRetry( + attempts=5, start_timeout=0.1, max_timeout=30, factor=2 + ), + ) as client: + results = await asyncio.gather( + *[ + _post(client=client, path=path, timeout=timeout, request=req) + for req in pseudo_requests + ] + ) + + return results + @staticmethod def _generate_new_correlation_id() -> str: return str(ULID()) @staticmethod - def _handle_response_error(response: requests.Response) -> None: + async def _handle_response_error(response: ClientResponse) -> None: """Report error messages in response object.""" + match response.status: + case status if status in range(200, 300): + pass + case _: + print(response.headers) + print(await response.text()) + response.raise_for_status() + + @staticmethod + def _handle_response_error_sync(response: requests.Response) -> None: + """Report error messages in response object. For synchronous callers.""" match response.status_code: case status if status in range(200, 300): pass @@ -92,31 +173,7 @@ def _post_to_file_endpoint( timeout=timeout, ) - PseudoClient._handle_response_error(response) - return response - - def _post_to_field_endpoint( - self, - path: str, - pseudo_field_request: ( - PseudoFieldRequest | DepseudoFieldRequest | RepseudoFieldRequest - ), - timeout: int, - stream: bool = False, - ) -> requests.Response: - response = requests.post( - url=f"{self.pseudo_service_url}/{path}", - headers={ - "Authorization": f"Bearer {self.__auth_token()}", - "Content-Type": Mimetypes.JSON.value, - "X-Correlation-Id": PseudoClient._generate_new_correlation_id(), - }, - json={"request": pseudo_field_request.model_dump(by_alias=True)}, - stream=stream, - timeout=timeout, - ) - - PseudoClient._handle_response_error(response) + PseudoClient._handle_response_error_sync(response) return response def _post_to_sid_endpoint( @@ -140,7 +197,7 @@ def _post_to_sid_endpoint( timeout=TIMEOUT_DEFAULT, # seconds ) - PseudoClient._handle_response_error(response) + PseudoClient._handle_response_error_sync(response) return response diff --git a/src/dapla_pseudo/v1/result.py b/src/dapla_pseudo/v1/result.py index 45b58508..daaa69c0 100644 --- a/src/dapla_pseudo/v1/result.py +++ b/src/dapla_pseudo/v1/result.py @@ -1,7 +1,6 @@ """Common API models for builder packages.""" from collections import Counter -from io import BufferedWriter from pathlib import Path from typing import Any from typing import cast @@ -161,10 +160,6 @@ def to_file(self, file_path: str, **kwargs: Any) -> None: datadoc_file_path = Path(file_path).parent.joinpath(Path(datadoc_file_name)) datadoc_file_handle = datadoc_file_path.open(mode="w") - file_handle = cast( - BufferedWriter, file_handle - ) # file handle is always BufferedWriter when opening with "wb" - match self._pseudo_data: case pl.DataFrame() as df: write_from_df(df, file_format, file_handle, **kwargs) diff --git a/tests/v1/unit/test_base_pseudonymizer.py b/tests/v1/unit/test_base_pseudonymizer.py index 9e93e8fc..3211eaf4 100644 --- a/tests/v1/unit/test_base_pseudonymizer.py +++ b/tests/v1/unit/test_base_pseudonymizer.py @@ -15,6 +15,7 @@ from dapla_pseudo.v1.models.api import PseudoFieldResponse from dapla_pseudo.v1.models.api import PseudoFileRequest from dapla_pseudo.v1.models.api import PseudoFileResponse +from dapla_pseudo.v1.models.api import RawPseudoMetadata from dapla_pseudo.v1.models.core import File from dapla_pseudo.v1.models.core import Mimetypes from dapla_pseudo.v1.models.core import PseudoConfig @@ -87,35 +88,36 @@ def test_pseudonymize_field( values=list(df_personer["fnr"]), ) - expected_json = { - "data": ["jJuuj0i", "ylc9488", "yeLfkaL"], - "logs": [], - "metrics": [{"MAPPED_SID": 3}], - "datadoc_metadata": { - "pseudo_variables": [ - { - "short_name": "fnr", - "data_element_path": "fnr", - "data_element_pattern": "fnr*", - "stable_identifier_type": "FREG_SNR", - "stable_identifier_version": "2023-08-31", - "encryption_algorithm": "TINK-FPE", - "encryption_key_reference": "papis-common-key-1", - "encryption_algorithm_parameters": [ - {"keyId": "papis-common-key-1"}, - {"strategy": "skip"}, - ], + mocked_data = ["jJuuj0i", "ylc9488", "yeLfkaL"] + mocked_metadata = RawPseudoMetadata( + field_name="fnr", + logs=[], + metrics=[{"MAPPED_SID": 3}], + datadoc=[ + { + "datadoc_metadata": { + "pseudo_variables": { + "short_name": "fnr", + "data_element_path": "fnr", + "data_element_pattern": "fnr*", + "stable_identifier_type": "FREG_SNR", + "stable_identifier_version": "2023-08-31", + "encryption_algorithm": "TINK-FPE", + "encryption_key_reference": "papis-common-key-1", + "encryption_algorithm_parameters": [ + {"keyId": "papis-common-key-1"}, + {"strategy": "skip"}, + ], + } } - ] - }, - } - - mocked_response = Mock(content=bytes(json.dumps(expected_json), encoding="utf-8")) + } + ], + ) - mocked_post_to_field = mocker.patch( - "dapla_pseudo.v1.client.PseudoClient._post_to_field_endpoint", + mocked_asyncio_run = mocker.patch( + "dapla_pseudo.v1.baseclasses.asyncio.run", ) - mocked_post_to_field.return_value = mocked_response + mocked_asyncio_run.return_value = [("fnr", mocked_data, mocked_metadata)] base = _BasePseudonymizer( pseudo_operation=PseudoOperation.PSEUDONYMIZE, dataset=df_personer, @@ -125,9 +127,10 @@ def test_pseudonymize_field( response = base._pseudonymize_field([sid_req], timeout=ANY) metadata = response.raw_metadata[0] assert isinstance(response, PseudoFieldResponse) - assert metadata.datadoc == expected_json["datadoc_metadata"]["pseudo_variables"] # type: ignore[index] - assert metadata.logs == expected_json["logs"] - assert metadata.metrics == expected_json["metrics"] + + assert metadata.datadoc == mocked_metadata.datadoc + assert metadata.logs == mocked_metadata.logs + assert metadata.metrics == mocked_metadata.metrics def test_pseudonymize_dataset( diff --git a/tests/v1/unit/test_client.py b/tests/v1/unit/test_client.py index b19da61d..ce16eebf 100644 --- a/tests/v1/unit/test_client.py +++ b/tests/v1/unit/test_client.py @@ -1,78 +1,110 @@ from unittest.mock import ANY +from unittest.mock import AsyncMock from unittest.mock import Mock from unittest.mock import patch import pytest +import pytest_asyncio import requests +from aiohttp import ClientResponse +from aiohttp import ClientResponseError +from aiohttp import RequestInfo +from aiohttp_retry.client import _RequestContext +from pytest_mock import MockerFixture from dapla_pseudo import PseudoClient from dapla_pseudo.constants import TIMEOUT_DEFAULT from dapla_pseudo.constants import PseudoFunctionTypes from dapla_pseudo.v1.models.api import PseudoFieldRequest -from dapla_pseudo.v1.models.api import PseudoFileRequest from dapla_pseudo.v1.models.core import DaeadKeywordArgs from dapla_pseudo.v1.models.core import PseudoFunction from dapla_pseudo.v1.models.core import PseudoKeyset -PKG = "dapla_pseudo.v1.client" +pytest_plugins = ("pytest_asyncio",) + -import pytest_cases +PKG = "dapla_pseudo.v1.client" -@pytest_cases.fixture() +@pytest_asyncio.fixture() def test_client() -> PseudoClient: base_url = "https://mocked.dapla-pseudo-service" auth_token = "some-auth-token" return PseudoClient(pseudo_service_url=base_url, auth_token=auth_token) -@patch("requests.post") -def test_post_to_field_endpoint_success( - mock_post: Mock, test_client: PseudoClient +@pytest.mark.asyncio +async def test_post_to_field_endpoint_success( + test_client: PseudoClient, mocker: MockerFixture ) -> None: - mock_response = Mock(spec=requests.Response) - mock_response.status_code = 200 + mock_request_context = AsyncMock(spec=_RequestContext) + mock_response = AsyncMock(spec=ClientResponse) + mock_response.status = 200 + + mock_response_content = { + "data": [1, 2, 3], + "logs": ["some-log"], + "metrics": ["some-metric"], + "datadoc_metadata": {"pseudo_variables": [{"some_var": "some_arg"}]}, + } + mock_response.json.return_value = mock_response_content + + mock_request_context.__aenter__.return_value = mock_response + + mocker.patch(f"{PKG}.RetryClient.post", return_value=mock_request_context) + mock_pseudo_field_request = Mock(spec=PseudoFieldRequest) - mock_post.return_value = mock_response + mock_pseudo_field_request.name = "magic" - response = test_client._post_to_field_endpoint( + results = await test_client.post_to_field_endpoint( path="test_path", - pseudo_field_request=mock_pseudo_field_request, + pseudo_requests=[mock_pseudo_field_request], timeout=TIMEOUT_DEFAULT, ) + resp_name, resp_data, resp_metadata = results[0] - assert response == mock_response - mock_post.assert_called_once() + assert resp_name == mock_pseudo_field_request.name + assert resp_data == mock_response_content["data"] + assert resp_metadata.logs == mock_response_content["logs"] + assert resp_metadata.metrics == mock_response_content["metrics"] + assert resp_metadata.datadoc == mock_response_content["datadoc_metadata"]["pseudo_variables"] # type: ignore[index] -@patch("requests.post") -def test_post_to_field_endpoint_failure( - mock_post: Mock, test_client: PseudoClient +@pytest.mark.asyncio +async def test_post_to_field_endpoint_failure( + test_client: PseudoClient, mocker: MockerFixture ) -> None: - mock_response = Mock(spec=requests.Response) - mock_response.status_code = 400 - mock_response.raise_for_status.side_effect = requests.exceptions.HTTPError( - "Mocked HTTP error", response=requests.Response() + mock_request_context = AsyncMock(spec=_RequestContext) + mock_response = AsyncMock(spec=ClientResponse) + mock_response.status = 400 + mock_response.raise_for_status.side_effect = ClientResponseError( + Mock(spec=RequestInfo), Mock(), message="Mocked HTTP error" ) - mock_response.headers = ANY - mock_response.text = ANY - mock_post.return_value = mock_response + mock_response.headers = AsyncMock() + mock_response.text = AsyncMock() + + mock_request_context.__aenter__.return_value = mock_response - mock_pseudo_request = Mock(spec=PseudoFileRequest) + mock_post = mocker.patch( + f"{PKG}.RetryClient.post", return_value=mock_request_context + ) + + mock_pseudo_field_request = Mock(spec=PseudoFieldRequest) + mock_pseudo_field_request.name = "magic" - with pytest.raises(requests.exceptions.HTTPError): - test_client._post_to_field_endpoint( + with pytest.raises(ClientResponseError): + await test_client.post_to_field_endpoint( path="test_path", - pseudo_field_request=mock_pseudo_request, + pseudo_requests=[mock_pseudo_field_request], timeout=TIMEOUT_DEFAULT, ) mock_post.assert_called_once() mock_response.raise_for_status.assert_called_once() -@patch("requests.post") -def test_post_to_field_endpoint_serialization( - _mock_post: Mock, test_client: PseudoClient +@pytest.mark.asyncio +async def test_post_to_field_endpoint_serialization( + test_client: PseudoClient, mocker: MockerFixture ) -> None: keyset = PseudoKeyset( encrypted_keyset="test_enc_keyset", @@ -86,14 +118,16 @@ def test_post_to_field_endpoint_serialization( pseudo_func=pseudo_func, name="", pattern="", values=[], keyset=keyset ) - test_client._post_to_field_endpoint( + mock_post = mocker.patch(f"{PKG}.RetryClient.post", return_value=AsyncMock()) + + await test_client.post_to_field_endpoint( path="test_path", - pseudo_field_request=pseudo_field_request, + pseudo_requests=[pseudo_field_request], timeout=TIMEOUT_DEFAULT, ) expected_json = {"request": pseudo_field_request.model_dump(by_alias=True)} - _mock_post.assert_called_once_with( + mock_post.assert_called_once_with( url="https://mocked.dapla-pseudo-service/test_path", headers={ "Authorization": "Bearer some-auth-token", @@ -101,7 +135,6 @@ def test_post_to_field_endpoint_serialization( "X-Correlation-Id": ANY, }, json=expected_json, - stream=False, timeout=TIMEOUT_DEFAULT, )