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Output additional statistics to support QC #20

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abought opened this issue Jan 6, 2020 · 0 comments
Open

Output additional statistics to support QC #20

abought opened this issue Jan 6, 2020 · 0 comments
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type: enhancement
Milestone
4.16.0

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@abought
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abought commented Jan 6, 2020

Requested by Adam Locke:

The two noticeable features in single variant meta-analysis that are lacking are heterogeneity statistics and the mean and std err of the allele frequency. Both are quite useful for post-analysis QC and data checking.
@welchr welchr added this to the 4.16.0 milestone Mar 17, 2020
welchr added a commit that referenced this issue Apr 12, 2020
@welchr
WIP #20
43d765b
welchr added a commit that referenced this issue Apr 12, 2020
@welchr
WIP #20
fb568de
welchr added a commit that referenced this issue Apr 16, 2020
@welchr
Implement support for heterogeneity statistics
5d41c6c 
Partially implements #20
welchr added a commit that referenced this issue Apr 19, 2020
@welchr
Fix heterogeneity stats
fdab910 
Patch for #20
welchr added a commit that referenced this issue Apr 24, 2020
@welchr
Fix test case for heterogeneity chisq values
56ab521 
Test for #20
welchr added a commit that referenced this issue May 7, 2020
@welchr
Extra AF stats: mean, SE, min, max
c708e4f 
Implements #20
welchr added a commit that referenced this issue May 7, 2020
@welchr
Test case for new AF stats
a05128d 
Closes #20
@welchr welchr mentioned this issue May 14, 2020
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4.16.0
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@welchr @abought