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libgsl.so.23: cannot open shared object file #18

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maojn opened this issue Sep 25, 2019 · 1 comment
Open

libgsl.so.23: cannot open shared object file #18

maojn opened this issue Sep 25, 2019 · 1 comment

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@maojn
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maojn commented Sep 25, 2019

Hi,
When I run $ cget install -f ./requirements.txt, I saw error :
Downloading https://github.com/statgen/savvy/archive/019a1ddaa9ec588f807f234f68787862f94ea057.tar.gz
[######################################################################] 100%
Extracting archive /usr/local/Anaconda/envs_app/raremetal/4.15.1/raremetal/cget/cget/build/tmp-c55593ea7d134b458770751c9618f8c1/019a1ddaa9ec588f807f234f68787862f94ea057.tar.gz ...
Downloading https://github.com/jonathonl/shrinkwrap/archive/develop.tar.gz
[######################################################################] 100%
Extracting archive /usr/local/Anaconda/envs_app/raremetal/4.15.1/raremetal/cget/cget/build/tmp-2855756dd580474ba6c1a5c8cf329402/develop.tar.gz ...
/usr/local/Cmake/3.12.1/bin/cmake: error while loading shared libraries: libgsl.so.23: cannot open shared object file: No such file or directory
Command failed: ['/usr/local/Cmake/3.12.1/bin/cmake', '-DCMAKE_TOOLCHAIN_FILE=/usr/local/Anaconda/envs_app/raremetal/4.15.1/raremetal/cget/cget/cget.cmake', '/usr/local/Anaconda/envs_app/raremetal/4.15.1/raremetal/cget/cget/build/tmp-2855756dd580474ba6c1a5c8cf329402/shrinkwrap-develop', '-DCGET_CMAKE_DIR=/usr/local/Anaconda/envs_app/raremetal/4.15.1/lib/python3.7/site-packages/cget/cmake', '-DCGET_CMAKE_ORIGINAL_SOURCE_FILE=/usr/local/Anaconda/envs_app/raremetal/4.15.1/raremetal/cget/cget/build/tmp-2855756dd580474ba6c1a5c8cf329402/shrinkwrap-develop/cget_original_cmake_file.cmake', '-DBUILD_TESTING=Off', '-DCMAKE_BUILD_TYPE=Release', '-DCMAKE_INSTALL_PREFIX=/usr/local/Anaconda/envs_app/raremetal/4.15.1/raremetal/cget/cget/pkg/jonathonl__shrinkwrap/install']
Failed to build package statgen/savvy

The strange thing is the $LD_LIBRARY_PATH is set and the libgsl.so.23 is in the path /usr/local/GSL/gcc-7.2.0/2.5/lib

Any help will be appreciated.

Regards,

Jean

@jonathonl
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Are you able to run /usr/local/Cmake/3.12.1/bin/cmake --version without getting an error?

@abought abought added the bug label Jan 6, 2020
@welchr welchr added type: bug and removed bug labels Mar 16, 2020
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