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pheweb augment-phenos takes hours for just one single new GWAS #232

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jielab opened this issue Jul 7, 2024 · 2 comments
Open

pheweb augment-phenos takes hours for just one single new GWAS #232

jielab opened this issue Jul 7, 2024 · 2 comments

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@jielab
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jielab commented Jul 7, 2024

Hi, there:

please see the screenshot below. I previously processed 124 GWAS. Now just added 1 new GWAS. But pheweb augment-phenos takes hours, Completed 31 tasks in 95 minutes.

Why pheweb needs to re-process all 125 GWAS for this step, even though just 1 GWA is new? Is there a way to bypass this step?

image

Thank you very much!
JH

@pjvandehaar
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Hi Jie.

I built PheWeb at my previous job. I left there 2.5 years ago. I've answered a lot of questions about it. I've lost interest in answering questions about it.

I will now answer one question per person per year.

@jielab
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jielab commented Jul 8, 2024

Surely understood. Thanks for providing the audience a great software. If there is a way to help develop this software, I would love to contribute some funding from my research budget.

Best regards,
Jie

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