_pkgdown.yml

url: https://stangandaho.github.io/maimer/
template:
  bootstrap: 5
  light-switch: yes
  bslib:
    base_font:
      google: Montserrat
    heading_font:
      google: Montserrat
    code_font:
      google: JetBrains Mono
  math-rendering: mathjax
navbar:
  structure:
    left:
    - intro
    - reference
    - articles
    - news
    right:
    - search
    - github
    - linkedin
    - lightswitch
  components:
    intro:
      text: Home
      icon: fa-home
      href: index.html
      aria-label: Home
    reference:
      text: Functions
      icon: fa-code
      href: reference/index.html
    articles:
      text: Articles
      icon: fa-blog
      menu:
      - text: 1. Data preparation
        href: articles/camtrap_data_preparation.html
      - text: 2. Data analysis
        href: articles/camtrap_data_analysis.html
      - text: 3. Elegant visualizations
        href: articles/camtrap_analysis_visualisation.html
    news:
      text: News
      icon: fa-face-smile
      href: news/index.html
    github:
      href: https://github.com/stangandaho/maimer
      aria-label: GitHub
      icon: fa-github
    linkedin:
      href: https://www.linkedin.com/in/stangandaho/
      aria-label: LinkedIn
      icon: fa-linkedin
component:
  home: ~
reference:
- title: Prepare field survey
  desc: |
    Set up field survey design for camera trap deployement
  contents:
  - mm_survey_design
  - pendjari
- title: Process media (images) file
  desc: |
    Functions reading and writing metadata
  contents:
  - mm_app
  - mm_get_metadata
  - mm_get_hs
  - mm_create_hs
  - mm_remove_hs
- title: Data processing
  desc: |
    Functions for preparing and tansforming camera trap data
  contents:
  - mm_read
  - mm_stack_df
  - mm_check_location
  - mm_independence
  - mm_to_radian
  - mm_to_time
  - mm_to_community
  - mm_standardize
  - mm_check_name
  - mm_to_occupancy
- title: Data analysis
  desc: |
    Functions to run common camera trap data analysis
  contents:
  - mm_plot_density
  - mm_plot_overlap
  - mm_plot_overlap_coef
  - mm_overlap_estimates
  - mm_bootstrap
  - mm_resample
  - mm_boot_estimates
  - mm_boot_CI
  - mm_overlap_matrix
  - mm_temporal_shift
  - mm_alpha_diversity
  - mm_dissimilarity
  - mm_spatial_coverage