diff --git a/sql/schema/schema.sql b/sql/schema/schema.sql
index 90e23d0d..0f98217c 100644
--- a/sql/schema/schema.sql
+++ b/sql/schema/schema.sql
@@ -1,12 +1,21 @@
 -- Schema for codegate database using SQLite
 
+-- Workspaces table
+CREATE TABLE workspaces (
+    id TEXT PRIMARY KEY,  -- UUID stored as TEXT
+    name TEXT,
+    folder_tree_json TEXT -- JSON stored as TEXT
+);
+
 -- Prompts table
 CREATE TABLE prompts (
     id TEXT PRIMARY KEY,  -- UUID stored as TEXT
+    workspace_id TEXT NOT NULL,
     timestamp DATETIME NOT NULL,
     provider TEXT,       -- VARCHAR(255)
     request TEXT NOT NULL,  -- Record the full request that arrived to the server
-    type TEXT NOT NULL -- VARCHAR(50) (e.g. "fim", "chat")
+    type TEXT NOT NULL, -- VARCHAR(50) (e.g. "fim", "chat")
+    FOREIGN KEY (workspace_id) REFERENCES workspaces(id),
 );
 
 -- Outputs table
@@ -41,6 +50,7 @@ CREATE TABLE settings (
 );
 
 -- Create indexes for foreign keys and frequently queried columns
+CREATE INDEX idx_prompts_workspace_id ON prompts(workspace_id);
 CREATE INDEX idx_outputs_prompt_id ON outputs(prompt_id);
 CREATE INDEX idx_alerts_prompt_id ON alerts(prompt_id);
 CREATE INDEX idx_prompts_timestamp ON prompts(timestamp);
diff --git a/src/codegate/cli.py b/src/codegate/cli.py
index 06456a00..7cd89d55 100644
--- a/src/codegate/cli.py
+++ b/src/codegate/cli.py
@@ -20,6 +20,7 @@
 from codegate.providers.copilot.provider import CopilotProvider
 from codegate.server import init_app
 from codegate.storage.utils import restore_storage_backup
+from codegate.workspaces.workspaces import Workspaces
 
 
 class UvicornServer:
@@ -318,6 +319,7 @@ def serve(
         else:
             click.echo("Existing Certificates are already present.")
 
+        Workspaces().read_workspaces('/app/codegate_workspaces', cfg.ignore_paths_workspaces)
         # Initialize secrets manager and pipeline factory
         secrets_manager = SecretsManager()
         pipeline_factory = PipelineFactory(secrets_manager)
diff --git a/src/codegate/config.py b/src/codegate/config.py
index 3f99fd04..66ea64df 100644
--- a/src/codegate/config.py
+++ b/src/codegate/config.py
@@ -54,6 +54,9 @@ class Config:
     force_certs: bool = False
 
     max_fim_hash_lifetime: int = 60 * 5  # Time in seconds. Default is 5 minutes.
+    ignore_paths_workspaces = [
+        ".git", "__pycache__", ".venv", ".DS_Store", "node_modules", ".pytest_cache", ".ruff_cache"
+    ]
 
     # Provider URLs with defaults
     provider_urls: Dict[str, str] = field(default_factory=lambda: DEFAULT_PROVIDER_URLS.copy())
diff --git a/src/codegate/db/connection.py b/src/codegate/db/connection.py
index 443ab008..668d1fb7 100644
--- a/src/codegate/db/connection.py
+++ b/src/codegate/db/connection.py
@@ -15,6 +15,7 @@
     GetPromptWithOutputsRow,
     Output,
     Prompt,
+    Workspace,
 )
 from codegate.pipeline.base import PipelineContext
 
@@ -252,6 +253,33 @@ async def record_context(self, context: Optional[PipelineContext]) -> None:
         except Exception as e:
             logger.error(f"Failed to record context: {context}.", error=str(e))
 
+    async def record_workspaces(self, workspaces: List[Workspace]) -> List[Workspace]:
+        if not workspaces:
+            return
+        sql = text(
+            """
+            INSERT INTO workspaces (id, name, folder_tree_json)
+            VALUES (:id, :name, :folder_tree_json)
+            RETURNING *
+            """
+        )
+        workspaces_tasks = []
+        async with asyncio.TaskGroup() as tg:
+            for workspace in workspaces:
+                try:
+                    result = tg.create_task(self._execute_update_pydantic_model(workspace, sql))
+                    workspaces_tasks.append(result)
+                except Exception as e:
+                    logger.error(f"Failed to record alert: {workspace}.", error=str(e))
+
+        recorded_workspaces = []
+        for workspace_coro in workspaces_tasks:
+            workspace_recorded = workspace_coro.result()
+            if workspace_recorded:
+                recorded_workspaces.append(workspace_recorded)
+
+        return recorded_workspaces
+
 
 class DbReader(DbCodeGate):
 
diff --git a/src/codegate/db/models.py b/src/codegate/db/models.py
index 22859573..d47dda2c 100644
--- a/src/codegate/db/models.py
+++ b/src/codegate/db/models.py
@@ -37,6 +37,12 @@ class Setting(pydantic.BaseModel):
     other_settings: Optional[Any]
 
 
+class Workspace(pydantic.BaseModel):
+    id: Any
+    name: str
+    folder_tree_json: str
+
+
 # Models for select queries
 
 
diff --git a/src/codegate/workspaces/__init__.py b/src/codegate/workspaces/__init__.py
new file mode 100644
index 00000000..e69de29b
diff --git a/src/codegate/workspaces/workspaces.py b/src/codegate/workspaces/workspaces.py
new file mode 100644
index 00000000..28817413
--- /dev/null
+++ b/src/codegate/workspaces/workspaces.py
@@ -0,0 +1,80 @@
+import asyncio
+import json
+import uuid
+from pathlib import Path
+from typing import Dict, List, Optional, Union
+
+from pydantic import BaseModel
+
+from codegate.db.connection import DbRecorder
+from codegate.db.models import Workspace
+
+
+class Folder(BaseModel):
+    files: List[str] = []
+
+
+class Repository(BaseModel):
+    name: str
+    folder_tree: Dict[str, Folder]
+
+
+class FolderRepoScanner:
+
+    def __init__(self, ignore_paths: Optional[List[str]] = None):
+        if ignore_paths is None:
+            ignore_paths = []
+        self.ignore_paths = ignore_paths
+
+    def _should_skip(self, path: Path):
+        """Skip certain paths that are not relevant for scanning."""
+        return any(part in path.parts for part in self.ignore_paths)
+
+    def _read_repository_structure(self, repo_path: Path) -> Dict[str, Folder]:
+        folder_tree: Dict[str, Folder] = {}
+        for path in repo_path.rglob('*'):
+            if self._should_skip(path):
+                continue
+
+            relative_path = path.relative_to(repo_path)
+            if path.is_dir():
+                folder_tree[str(relative_path)] = Folder()
+            else:
+                parent_dir = str(relative_path.parent)
+                if parent_dir not in folder_tree:
+                    folder_tree[parent_dir] = Folder()
+                folder_tree[parent_dir].files.append(path.name)
+        return folder_tree
+
+    def read(self, path_str: Union[str, Path]) -> List[Repository]:
+        path_dir = Path(path_str)
+        if not path_dir.is_dir():
+            print(f"Path {path_dir} is not a directory")
+            return []
+
+        found_repos = []
+        for child_path in path_dir.rglob('*'):
+            if child_path.is_dir() and (child_path / ".git").exists():
+                repo_structure = self._read_repository_structure(child_path)
+                new_repo = Repository(name=child_path.name, folder_tree=repo_structure)
+                found_repos.append(new_repo)
+                print(f"Found repository at {child_path}.")
+
+        return found_repos
+
+class Workspaces:
+
+    def __init__(self):
+        self._db_recorder = DbRecorder()
+
+    def read_workspaces(self, path: str, ignore_paths: Optional[List[str]] = None) -> None:
+        repos = FolderRepoScanner(ignore_paths).read(path)
+        workspaces = [
+            Workspace(
+                id=str(uuid.uuid4()),
+                name=repo.name,
+                folder_tree_json=json.dumps(repo.folder_tree)
+            )
+            for repo in repos
+        ]
+        asyncio.run(self._db_recorder.record_workspaces(workspaces))