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check conda not using anaconda #74

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EdGreen21 opened this issue Jan 22, 2025 · 1 comment · Fixed by #76
Closed

check conda not using anaconda #74

EdGreen21 opened this issue Jan 22, 2025 · 1 comment · Fixed by #76

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@EdGreen21
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on running docker inspect on the runner image I see

  ```
      "maintainer": "Anaconda, Inc",
            "org.opencontainers.image.created": "2024-12-17T16:27:06.099Z",
            "org.opencontainers.image.description": "predicTCR runner image",
            "org.opencontainers.image.licenses": "MIT",
            "org.opencontainers.image.revision": "5551f212ec5fbb3816b8f25b32c9178c65689468",
            "org.opencontainers.image.source": "https://github.com/ssciwr/predicTCR",
            "org.opencontainers.image.title": "docker-images",
            "org.opencontainers.image.url": "https://github.com/anaconda/docker-images",
            "org.opencontainers.image.version": "24.11.1-0"


Is there some sort of anaconda dependency here? `env.yaml` correctly limits channels to free channels only (i.e. no `defaults`, no `anaconda`)
@lkeegan
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lkeegan commented Jan 22, 2025

There's no anaconda dependency in terms of the conda environment, but the docker image is one provided by anaconda.

I'll look into switching to https://github.com/mamba-org/micromamba-docker instead to avoid any possible issues with anaconda usage.

lkeegan added a commit that referenced this issue Jan 22, 2025
- also remove `r` and `pkgs/r` channels as they depend on anaconda
- no longer any link to/use of anaconda in this project
- update env var names in developer section of runner readme
- resolves #74
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2 participants