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example2.html
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<html>
<head>
<title>Checkboxes</title>
<script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.2/jquery.min.js"></script>
<script src="jsmol/JSmol.min.nojq.js"></script>
<script src="./jquery.jmolTools.js"></script>
</head>
<body>
<!-- jsmol will be loaded here -->
<div>
<script src="./jsmol_initializer.js"></script>
<input type="button" id="neighborhood" value="Show neighborhood">
<input type="button" id="prev" value="Previous">
<input type="button" id="next" value="Next">
<input type="button" id='all' value='Show all'>
<label><input type="checkbox" id="showNtNums">Nucleotide numbers</label>
<label><input type="checkbox" id="stereo">Stereo</label>
</div>
<div>
<ul>
<li><label><input type='checkbox' id='IL_1JBR_002' class='jmolInline' data-coord='1JBR|1|D|C|6,1JBR|1|D|U|7,1JBR|1|D|C|8,1JBR|1|D|A|9,1JBR|1|D|G|10,1JBR|1|D|U|11,1JBR|1|D|A|12,1JBR|1|D|C|13,1JBR|1|D|G|18,1JBR|1|D|G|19,1JBR|1|D|A|20,1JBR|1|D|A|21,1JBR|1|D|C|22,1JBR|1|D|C|23,1JBR|1|D|G|24'>IL_1JBR_002</label></li>
<li><label><input type='checkbox' id='IL_1JBR_001' class='jmolInline' data-coord='1JBR|1|C|C|6,1JBR|1|C|U|7,1JBR|1|C|C|8,1JBR|1|C|A|9,1JBR|1|C|G|10,1JBR|1|C|U|11,1JBR|1|C|A|12,1JBR|1|C|C|13,1JBR|1|F|G|18,1JBR|1|F|G|19,1JBR|1|F|A|20,1JBR|1|F|A|21,1JBR|1|F|C|22,1JBR|1|F|C|23,1JBR|1|F|G|24'>IL_1JBR_001</label></li>
<li><label><input type='checkbox' id='IL_1Q96_001' class='jmolInline' data-coord='1Q96|1|A|C|6,1Q96|1|A|U|7,1Q96|1|A|C|8,1Q96|1|A|A|9,1Q96|1|A|G|10,1Q96|1|A|U|11,1Q96|1|A|A|12,1Q96|1|A|U|13,1Q96|1|A|A|18,1Q96|1|A|G|19,1Q96|1|A|A|20,1Q96|1|A|A|21,1Q96|1|A|C|22,1Q96|1|A|C|23,1Q96|1|A|G|24'>IL_1Q96_001</label></li>
<li><label><input type='checkbox' id='IL_1Q96_002' class='jmolInline' data-coord='1Q96|1|B|C|6,1Q96|1|B|U|7,1Q96|1|B|C|8,1Q96|1|B|A|9,1Q96|1|B|G|10,1Q96|1|B|U|11,1Q96|1|B|A|12,1Q96|1|B|U|13,1Q96|1|B|A|18,1Q96|1|B|G|19,1Q96|1|B|A|20,1Q96|1|B|A|21,1Q96|1|B|C|22,1Q96|1|B|C|23,1Q96|1|B|G|24'>IL_1Q96_002</label></li>
<li><label><input type='checkbox' id='IL_1Q96_003' class='jmolInline' data-coord='1Q96|1|C|C|6,1Q96|1|C|U|7,1Q96|1|C|C|8,1Q96|1|C|A|9,1Q96|1|C|G|10,1Q96|1|C|U|11,1Q96|1|C|A|12,1Q96|1|C|U|13,1Q96|1|C|A|18,1Q96|1|C|G|19,1Q96|1|C|A|20,1Q96|1|C|A|21,1Q96|1|C|C|22,1Q96|1|C|C|23,1Q96|1|C|G|24'>IL_1Q96_003</label></li>
<li><label><input type='checkbox' id='IL_3U5H_122' class='jmolInline' data-coord='3U5H|1|5|C|3018,3U5H|1|5|U|3019,3U5H|1|5|U|3020,3U5H|1|5|A|3021,3U5H|1|5|G|3022,3U5H|1|5|U|3023,3U5H|1|5|A|3024,3U5H|1|5|C|3025,3U5H|1|5|G|3030,3U5H|1|5|G|3031,3U5H|1|5|A|3032,3U5H|1|5|A|3033,3U5H|1|5|C|3034,3U5H|1|5|A|3035,3U5H|1|5|G|3036'>IL_3U5H_122</label></li>
<li><label><input type='checkbox' id='IL_3UXR_006' class='jmolInline' data-coord='3UXR|1|A|C|201,3UXR|1|A|U|202,3UXR|1|A|C|203,3UXR|1|A|A|204,3UXR|1|A|G|205,3UXR|1|A|U|206,3UXR|1|A|A|207,3UXR|1|A|C|208,3UXR|1|A|G|188,3UXR|1|A|G|189,3UXR|1|A|A|190,3UXR|1|A|A|191,3UXR|1|A|C|192,3UXR|1|A|U|193,3UXR|1|A|G|194'>IL_3UXR_006</label></li>
<li><label><input type='checkbox' id='IL_4A1B_003' class='jmolInline' data-coord='4A1B|1|1|C|80,4A1B|1|1|C|81,4A1B|1|1|C|82,4A1B|1|1|A|83,4A1B|1|1|G|84,4A1B|1|1|U|85,4A1B|1|1|A|86,4A1B|1|1|A|87,4A1B|1|1|U|95,4A1B|1|1|G|96,4A1B|1|1|A|97,4A1B|1|1|A|98,4A1B|1|1|C|99,4A1B|1|1|A|100,4A1B|1|1|G|101'>IL_4A1B_003</label></li>
<li><label><input type='checkbox' id='IL_1S72_006' class='jmolInline' data-coord='1S72|1|0|C|171,1S72|1|0|U|172,1S72|1|0|C|173,1S72|1|0|A|174,1S72|1|0|G|175,1S72|1|0|U|176,1S72|1|0|A|177,1S72|1|0|U|178,1S72|1|0|A|158,1S72|1|0|G|159,1S72|1|0|A|160,1S72|1|0|A|161,1S72|1|0|C|162,1S72|1|0|U|163,1S72|1|0|G|164'>IL_1S72_006</label></li>
<li><label><input type='checkbox' id='IL_2QBG_011' class='jmolInline' data-coord='2QBG|1|B|C|201,2QBG|1|B|U|202,2QBG|1|B|A|203,2QBG|1|B|A|204,2QBG|1|B|G|205,2QBG|1|B|U|206,2QBG|1|B|A|207,2QBG|1|B|C|208,2QBG|1|B|G|188,2QBG|1|B|G|189,2QBG|1|B|A|190,2QBG|1|B|A|191,2QBG|1|B|C|192,2QBG|1|B|U|193,2QBG|1|B|G|194'>IL_2QBG_011</label></li>
<li><label><input type='checkbox' id='IL_2ZJR_006' class='jmolInline' data-coord='2ZJR|1|X|C|178,2ZJR|1|X|U|179,2ZJR|1|X|C|180,2ZJR|1|X|A|181,2ZJR|1|X|G|182,2ZJR|1|X|U|183,2ZJR|1|X|A|184,2ZJR|1|X|C|185,2ZJR|1|X|G|165,2ZJR|1|X|G|166,2ZJR|1|X|A|167,2ZJR|1|X|A|168,2ZJR|1|X|C|169,2ZJR|1|X|U|170,2ZJR|1|X|G|171'>IL_2ZJR_006</label></li>
<li><label><input type='checkbox' id='IL_4A1B_118' class='jmolInline' data-coord='4A1B|1|1|G|3007,4A1B|1|1|U|3008,4A1B|1|1|U|3009,4A1B|1|1|A|3010,4A1B|1|1|G|3011,4A1B|1|1|U|3012,4A1B|1|1|A|3013,4A1B|1|1|C|3014,4A1B|1|1|G|3019,4A1B|1|1|G|3020,4A1B|1|1|A|3021,4A1B|1|1|A|3022,4A1B|1|1|C|3023,4A1B|1|1|A|3024,4A1B|1|1|C|3025'>IL_4A1B_118</label></li>
<li><label><input type='checkbox' id='IL_2ZJR_007' class='jmolInline' data-coord='2ZJR|1|X|G|215,2ZJR|1|X|U|216,2ZJR|1|X|U|217,2ZJR|1|X|A|218,2ZJR|1|X|G|219,2ZJR|1|X|U|220,2ZJR|1|X|A|221,2ZJR|1|X|G|222,2ZJR|1|X|C|230,2ZJR|1|X|G|231,2ZJR|1|X|A|232,2ZJR|1|X|A|233,2ZJR|1|X|C|234,2ZJR|1|X|C|235,2ZJR|1|X|C|236'>IL_2ZJR_007</label></li>
<li><label><input type='checkbox' id='IL_4A1C_008' class='jmolInline' data-coord='4A1C|1|3|G|71,4A1C|1|3|U|72,4A1C|1|3|U|73,4A1C|1|3|A|74,4A1C|1|3|G|75,4A1C|1|3|U|76,4A1C|1|3|A|77,4A1C|1|3|C|78,4A1C|1|3|G|98,4A1C|1|3|G|99,4A1C|1|3|A|100,4A1C|1|3|A|101,4A1C|1|3|G|102,4A1C|1|3|U|103,4A1C|1|3|C|104'>IL_4A1C_008</label></li>
<li><label><input type='checkbox' id='IL_3U5H_148' class='jmolInline' data-coord='3U5H|1|7|A|72,3U5H|1|7|C|74,3U5H|1|7|G|75,3U5H|1|7|A|76,3U5H|1|7|G|77,3U5H|1|7|U|78,3U5H|1|7|A|79,3U5H|1|7|G|80,3U5H|1|7|C|100,3U5H|1|7|G|101,3U5H|1|7|A|102,3U5H|1|7|A|103,3U5H|1|7|A|104,3U5H|1|7|C|105,3U5H|1|7|U|106'>IL_3U5H_148</label></li>
<li><label><input type='checkbox' id='IL_3UXR_046' class='jmolInline' data-coord='3UXR|1|A|A|1262,3UXR|1|A|U|1263,3UXR|1|A|G|1264,3UXR|1|A|A|1265,3UXR|1|A|G|1266,3UXR|1|A|U|1267,3UXR|1|A|A|1268,3UXR|1|A|A|1269,3UXR|1|A|U|2011,3UXR|1|A|G|2012,3UXR|1|A|A|2013,3UXR|1|A|A|2014,3UXR|1|A|A|2015,3UXR|1|A|U|2016,3UXR|1|A|U|2017'>IL_3UXR_046</label></li>
<li><label><input type='checkbox' id='IL_2QBG_048' class='jmolInline' data-coord='2QBG|1|B|A|1262,2QBG|1|B|U|1263,2QBG|1|B|A|1264,2QBG|1|B|A|1265,2QBG|1|B|G|1266,2QBG|1|B|U|1267,2QBG|1|B|A|1268,2QBG|1|B|A|1269,2QBG|1|B|U|2011,2QBG|1|B|G|2012,2QBG|1|B|A|2013,2QBG|1|B|A|2014,2QBG|1|B|A|2015,2QBG|1|B|U|2016,2QBG|1|B|U|2017'>IL_2QBG_048</label></li>
<li><label><input type='checkbox' id='IL_2ZJR_045' class='jmolInline' data-coord='2ZJR|1|X|A|1275,2ZJR|1|X|U|1276,2ZJR|1|X|G|1277,2ZJR|1|X|A|1278,2ZJR|1|X|G|1279,2ZJR|1|X|U|1280,2ZJR|1|X|A|1281,2ZJR|1|X|A|1282,2ZJR|1|X|U|1994,2ZJR|1|X|G|1995,2ZJR|1|X|A|1996,2ZJR|1|X|A|1997,2ZJR|1|X|A|1998,2ZJR|1|X|U|1999,2ZJR|1|X|U|2000'>IL_2ZJR_045</label></li>
</ul>
</div>
</body>
</html>