NAMESPACE

useDynLib(diveMove, run_quantile)

## From standard packages
import(methods)                         # Paranoid measure
importFrom(stats4, mle, coef)
importFrom(graphics, abline, arrows, axTicks, axis, axis.POSIXct, box,
           contour, curve, hist, image, legend, lines, locator,
           mtext, par, plot, points, rect, rug, segments, text)
importFrom(grDevices, colorRampPalette, contourLines, dev.off, hsv, rgb)
importFrom(plotly,
           plot_ly, add_lines, add_markers, subplot, "%>%")
importFrom(stats, approx, approxfun, bw.nrd, ecdf, lm, median, nls,
           nls.control, predict, quantile, rexp, sd, smooth.spline,
           splinefun, stepfun)
importFrom(utils, read.csv)

## bkde2d and rq for speed calibration
importFrom(KernSmooth, bkde2D)
importFrom(quantreg, rq)
## unireg for dive phase identification
importFrom(uniReg, unireg)
## distance algorithms
importFrom(geosphere, distMeeus, distVincentyEllipsoid)

export("grpSpeedFilter",
       "rmsDistFilter",
       "austFilter",
       "logit",
       "unLogit",
       "boutfreqs",
       ## "boutsCDF",
       "calibrateDepth",
       "calibrateSpeed",
       "rqPlot",
       "distSpeed",
       "diveStats",
       "oneDiveStats",
       "readLocs",
       "readTDR",
       "rmixexp",
       "createTDR",
       "stampDive")
## Deprecated functions
export("bouts2.nlsFUN",
       "bouts2.nls",
       "bec2",
       "bec3",
       "bouts3.nlsFUN",
       "bouts3.nls",
       "bouts2.mleFUN")
## Defunct functions
export("bouts2.ll",
       "bouts2.LL",
       "bouts.mle")

exportClasses("TDR",
              "TDRspeed",
              "TDRcalibrate",
              "Bouts",
              "diveModel")

exportMethods("as.data.frame",
              "as.TDRspeed",
              "bec",
              "boutinit",
              "fitNLSbouts",
              "fitMLEbouts",
              "plotBouts",
              "plotBoutsCDF",
              "labelBouts",
              "timeBudget",
              "coerce",
              "depth<-",
              "speed<-",
              "ccData<-",
              "getCCData",
              "getDepth",
              "getDAct",
              "getDPhaseLab",
              "getDiveDeriv",
              "getDiveModel",
              "getDtime",
              "getFileName",
              "extractDive",
              "getGAct",
              "plotTDR",
              "plotDiveModel",
              "plotZOC",
              "show",
              "getTDR",
              "getTime",
              "getSpeedCoef",
              "getSpeed")