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run_exp.sh
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run_exp.sh
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#!/bin/sh
######################################################
echo "f_vesca 16 threads"
/usr/bin/time ./kmc -k28 -ci0 -cs100000000 -cx1000000000 -r -t16 @../../data/f_vesca.name.txt NA_f_vesca.res data
sleep 2
echo "f_vesca 12 threads"
/usr/bin/time ./kmc -k28 -ci0 -cs100000000 -cx1000000000 -r -t12 @../../data/f_vesca.name.txt NA_f_vesca.res data
sleep 2
echo "f_vesca 8 threads"
/usr/bin/time ./kmc -k28 -ci0 -cs100000000 -cx1000000000 -r -t8 @../../data/f_vesca.name.txt NA_f_vesca.res data
sleep 2
echo "f_vesca 4 threads"
/usr/bin/time ./kmc -k28 -ci0 -cs100000000 -cx1000000000 -r -t4 @../../data/f_vesca.name.txt NA_f_vesca.res data
sleep 2
#echo "f_vesca 2 threads"
#/usr/bin/time ./kmc -k28 -ci0 -cs100000000 -cx1000000000 -r -t2 @../../data/f_vesca.name.txt NA_f_vesca.res data
#sleep 2
######################################################
echo "g_gallus 16 threads"
/usr/bin/time ./kmc -k28 -ci0 -cs100000000 -cx1000000000 -r -t16 @../../data/g_gallus.name.txt NA_g_gallus.res data
sleep 2
echo "g_gallus 12 threads"
/usr/bin/time ./kmc -k28 -ci0 -cs100000000 -cx1000000000 -r -t12 @../../data/g_gallus.name.txt NA_g_gallus.res data
sleep 2
echo "g_gallus 8 threads"
/usr/bin/time ./kmc -k28 -ci0 -cs100000000 -cx1000000000 -r -t8 @../../data/g_gallus.name.txt NA_g_gallus.res data
sleep 2
echo "g_gallus 4 threads"
/usr/bin/time ./kmc -k28 -ci0 -cs100000000 -cx1000000000 -r -t4 @../../data/g_gallus.name.txt NA_g_gallus.res data
sleep 2
######################################################
echo "m_balbisiana 16 threads"
/usr/bin/time ./kmc -k28 -ci0 -cs100000000 -cx1000000000 -r -t16 @../../data/m_balbisiana.name.txt NA_m_balbisiana.res data
sleep 2
echo "m_balbisiana 12 threads"
/usr/bin/time ./kmc -k28 -ci0 -cs100000000 -cx1000000000 -r -t12 @../../data/m_balbisiana.name.txt NA_m_balbisiana.res data
sleep 2
echo "m_balbisiana 8 threads"
/usr/bin/time ./kmc -k28 -ci0 -cs100000000 -cx1000000000 -r -t8 @../../data/m_balbisiana.name.txt NA_m_balbisiana.res data
sleep 2
echo "m_balbisiana 4 threads"
/usr/bin/time ./kmc -k28 -ci0 -cs100000000 -cx1000000000 -r -t4 @../../data/m_balbisiana.name.txt NA_m_balbisiana.res data
sleep 2
######################################################
echo "h_sapiens_1 16 threads"
/usr/bin/time ./kmc -k28 -ci0 -cs100000000 -cx1000000000 -r -t16 @../../data/h_sapiens_1.name.txt NA_h_sapiens_1.res data
sleep 2
echo "h_sapiens_1 12 threads"
/usr/bin/time ./kmc -k28 -ci0 -cs100000000 -cx1000000000 -r -t12 @../../data/h_sapiens_1.name.txt NA_h_sapiens_1.res data
sleep 2
echo "h_sapiens_1 8 threads"
/usr/bin/time ./kmc -k28 -ci0 -cs100000000 -cx1000000000 -r -t8 @../../data/h_sapiens_1.name.txt NA_h_sapiens_1.res data
sleep 2
echo "h_sapiens_1 4 threads"
/usr/bin/time ./kmc -k28 -ci0 -cs100000000 -cx1000000000 -r -t4 @../../data/h_sapiens_1.name.txt NA_h_sapiens_1.res data
sleep 2
######################################################
echo "h_sapiens_2 16 threads"
/usr/bin/time ./kmc -k28 -ci0 -cs100000000 -cx1000000000 -r -t16 @../../data/h_sapiens_2.name.txt NA_h_sapiens_2.res data
sleep 2
echo "h_sapiens_2 12 threads"
/usr/bin/time ./kmc -k28 -ci0 -cs100000000 -cx1000000000 -r -t12 @../../data/h_sapiens_2.name.txt NA_h_sapiens_2.res data
sleep 2
echo "h_sapiens_2 8 threads"
/usr/bin/time ./kmc -k28 -ci0 -cs100000000 -cx1000000000 -r -t8 @../../data/h_sapiens_2.name.txt NA_h_sapiens_2.res data
sleep 2
echo "h_sapiens_2 4 threads"
/usr/bin/time ./kmc -k28 -ci0 -cs100000000 -cx1000000000 -r -t4 @../../data/h_sapiens_2.name.txt NA_h_sapiens_2.res data
sleep 2