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Implement SpotFinding Refactor #1514

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9 of 10 tasks

shanaxel42 opened this issue Aug 29, 2019 · 0 comments

Closed

9 of 10 tasks

Implement SpotFinding Refactor #1514

shanaxel42 opened this issue Aug 29, 2019 · 0 comments

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shanaxel42 commented Aug 29, 2019 •

edited by mattcai

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This epic will track the work proposed in #1500

Create DecodedIntensityTable - Adding DecodedIntensityTable class #1489
Create new modules and data structure - Adding new modules and data SpotFindingResults class. #1515
Set up physical coordinates - Add physical Coordinate support to SpotFindingResults #1516
Set up logging to work with new modules - 1.) Provenance logging refactor and support for SpotFindingResults #1517
Refactor ISS spot finding - 2) ISS spot finding refactor #1518
Refactor osmFISH spotFinding - 5.) refactoring localMaxPeakFinder/osmFIsh #1594
Refactor StarMap spotFinding - Spot Refactor: LocalSearchBlobDetector #1577
Refactor smFISH spotFinding - 4.) refactoring allen smFish with new spot finding #1580
Integrate Graph based decoding Graph based decoding initial commit #1482 into new modules - 9.) graph based decoding #1613
Formalize the ability for spot detection to return extra data - 10.) Formalizing the ability to return extra info from spot finding #1615

The text was updated successfully, but these errors were encountered:

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shanaxel42 added the Epic label

shanaxel42 added this to the 0.2.0 milestone

shanaxel42 self-assigned this

neuromusic closed this as completed

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