README.md

spacegraphcats-twofoo-example

This is an example spacegraphcats project using some real data from Shakya et al., 2013, to demonstrate a snakemake-based workflow for spacegraphcats queries.

See spacegraphcats/spacegraphcats-dory-example for what the various output files contain.

Quickstart:

Follow the spacegraphcats install instructions for conda.

Then,

git clone https://github.com/spacegraphcats/spacegraphcats-twofoo-example
cd spacegraphcats-twofoo-example/

and run

snakemake

to run the full spacegraphcats workflow.