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Breedbase Developers' Documentation

Documentation for Breedbase Developers Wiki

Installation

• Basic Docker setup
• [Basic Catalyst config](Basic Catalyst Configuration)

Database setup

Database description

• User management
• Lists
• Datasets

Ontologies

Searches

• Wizard

Germplasm

• Stocks
• Crosses and pedigrees
• Seedlots

Trials

• Breeding programs
• Locations
• Phenotype data
• NIRS data
• Labeldesigner
• FieldManagementFactors

Images

Tools

• Slurm Setup
• Analyses
• Blast
• MixedModels
• SolGS
• GWAS
• Processing Drone Imagery

Genotyping data

• Genotyping plates
• Genotyping protocols

Brapi Implementation

Updating the User Manual

Implementing and running tests