From 220669f83b2f698226a4eeb28b418888068cbcec Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Tue, 5 Mar 2024 11:11:17 +0100
Subject: [PATCH 1/3] chore: Bump pytest from 7.4.3 to 8.0.2 (#22)

Bumps [pytest](https://github.com/pytest-dev/pytest) from 7.4.3 to
8.0.2.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/pytest-dev/pytest/releases">pytest's
releases</a>.</em></p>
<blockquote>
<h2>8.0.2</h2>
<h1>pytest 8.0.2 (2024-02-24)</h1>
<h2>Bug Fixes</h2>
<ul>
<li><a
href="https://redirect.github.com/pytest-dev/pytest/issues/11895">#11895</a>:
Fix collection on Windows where initial paths contain the short version
of a path (for example <code>c:\PROGRA~1\tests</code>).</li>
<li><a
href="https://redirect.github.com/pytest-dev/pytest/issues/11953">#11953</a>:
Fix an <code>IndexError</code> crash raising from
<code>getstatementrange_ast</code>.</li>
<li><a
href="https://redirect.github.com/pytest-dev/pytest/issues/12021">#12021</a>:
Reverted a fix to [--maxfail]{.title-ref} handling in pytest 8.0.0
because it caused a regression in pytest-xdist whereby session fixture
teardowns may get executed multiple times when the max-fails is
reached.</li>
</ul>
<h2>8.0.1</h2>
<h1>pytest 8.0.1 (2024-02-16)</h1>
<h2>Bug Fixes</h2>
<ul>
<li><a
href="https://redirect.github.com/pytest-dev/pytest/issues/11875">#11875</a>:
Correctly handle errors from
<code>getpass.getuser</code>{.interpreted-text role=&quot;func&quot;} in
Python 3.13.</li>
<li><a
href="https://redirect.github.com/pytest-dev/pytest/issues/11879">#11879</a>:
Fix an edge case where <code>ExceptionInfo._stringify_exception</code>
could crash <code>pytest.raises</code>{.interpreted-text
role=&quot;func&quot;}.</li>
<li><a
href="https://redirect.github.com/pytest-dev/pytest/issues/11906">#11906</a>:
Fix regression with <code>pytest.warns</code>{.interpreted-text
role=&quot;func&quot;} using custom warning subclasses which have more
than one parameter in their [__init__]{.title-ref}.</li>
<li><a
href="https://redirect.github.com/pytest-dev/pytest/issues/11907">#11907</a>:
Fix a regression in pytest 8.0.0 whereby calling
<code>pytest.skip</code>{.interpreted-text role=&quot;func&quot;} and
similar control-flow exceptions within a
<code>pytest.warns()</code>{.interpreted-text role=&quot;func&quot;}
block would get suppressed instead of propagating.</li>
<li><a
href="https://redirect.github.com/pytest-dev/pytest/issues/11929">#11929</a>:
Fix a regression in pytest 8.0.0 whereby autouse fixtures defined in a
module get ignored by the doctests in the module.</li>
<li><a
href="https://redirect.github.com/pytest-dev/pytest/issues/11937">#11937</a>:
Fix a regression in pytest 8.0.0 whereby items would be collected in
reverse order in some circumstances.</li>
</ul>
<h2>pytest 8.0.0 (2024-01-27)</h2>
<p>See <a
href="https://github.com/pytest-dev/pytest/releases/tag/8.0.0rc1">8.0.0rc1</a>
and <a
href="https://github.com/pytest-dev/pytest/releases/tag/8.0.0rc2">8.0.0rc2</a>
for the full changes since pytest 7.4!</p>
<h2>Bug Fixes</h2>
<ul>
<li><a
href="https://redirect.github.com/pytest-dev/pytest/issues/11842">#11842</a>:
Properly escape the <code>reason</code> of a <code>skip
&lt;pytest.mark.skip ref&gt;</code>{.interpreted-text
role=&quot;ref&quot;} mark when writing JUnit XML files.</li>
<li><a
href="https://redirect.github.com/pytest-dev/pytest/issues/11861">#11861</a>:
Avoid microsecond exceeds <code>1_000_000</code> when using
<code>log-date-format</code> with <code>%f</code> specifier, which might
cause the test suite to crash.</li>
</ul>
<h2>8.0.0rc2</h2>
<h1>pytest 8.0.0rc2 (2024-01-17)</h1>
<h2>Improvements</h2>
<ul>
<li><a
href="https://redirect.github.com/pytest-dev/pytest/issues/11233">#11233</a>:
Improvements to <code>-r</code> for xfailures and xpasses:
<ul>
<li>Report tracebacks for xfailures when <code>-rx</code> is set.</li>
<li>Report captured output for xpasses when <code>-rX</code> is
set.</li>
<li>For xpasses, add <code>-</code> in summary between test name and
reason, to match how xfail is displayed.</li>
</ul>
</li>
<li><a
href="https://redirect.github.com/pytest-dev/pytest/issues/11825">#11825</a>:
The <code>pytest_plugin_registered</code>{.interpreted-text
role=&quot;hook&quot;} hook has a new <code>plugin_name</code> parameter
containing the name by which <code>plugin</code> is registered.</li>
</ul>
<h2>Bug Fixes</h2>
<ul>
<li><a
href="https://redirect.github.com/pytest-dev/pytest/issues/11706">#11706</a>:
Fix reporting of teardown errors in higher-scoped fixtures when using
[--maxfail]{.title-ref} or [--stepwise]{.title-ref}.</li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/pytest-dev/pytest/commit/31afeeb0df0e8bdab1325b5992a2cc733e981e82"><code>31afeeb</code></a>
Prepare release version 8.0.2</li>
<li><a
href="https://github.com/pytest-dev/pytest/commit/1b00a2f4fba7859c31dab4f5afdd9e1f07cbdd1e"><code>1b00a2f</code></a>
Merge pull request <a
href="https://redirect.github.com/pytest-dev/pytest/issues/12025">#12025</a>
from pytest-dev/backport-12022-to-8.0.x</li>
<li><a
href="https://github.com/pytest-dev/pytest/commit/ff2f66d84affb0fbcbf841b1897c7599026730bc"><code>ff2f66d</code></a>
[8.0.x] Revert &quot;Fix teardown error reporting when
<code>--maxfail=1</code> (<a
href="https://redirect.github.com/pytest-dev/pytest/issues/11721">#11721</a>)&quot;</li>
<li><a
href="https://github.com/pytest-dev/pytest/commit/8a8eed609c3c20da452446e1686df41ebda96d11"><code>8a8eed6</code></a>
[8.0.x] Fix collection of short paths on Windows (<a
href="https://redirect.github.com/pytest-dev/pytest/issues/12024">#12024</a>)</li>
<li><a
href="https://github.com/pytest-dev/pytest/commit/74346f027c205e5daffe66801094293744e8d85f"><code>74346f0</code></a>
[8.0.x] Allow Sphinx 7.x (<a
href="https://redirect.github.com/pytest-dev/pytest/issues/12005">#12005</a>)</li>
<li><a
href="https://github.com/pytest-dev/pytest/commit/b7657b4d6b69ee26e00d9a71c4d208506f644462"><code>b7657b4</code></a>
[8.0.x] Disallow Sphinx 6 and 7 (<a
href="https://redirect.github.com/pytest-dev/pytest/issues/12001">#12001</a>)</li>
<li><a
href="https://github.com/pytest-dev/pytest/commit/feb7c5e12ee3374b2c7c773614d76811ad21a4f4"><code>feb7c5e</code></a>
Merge pull request <a
href="https://redirect.github.com/pytest-dev/pytest/issues/11999">#11999</a>
from pytest-dev/backport-11996-to-8.0.x</li>
<li><a
href="https://github.com/pytest-dev/pytest/commit/090965574ece50c6be955719ced2a9cf8daaee17"><code>0909655</code></a>
[8.0.x] code: fix <code>IndexError</code> crash in
<code>getstatementrange_ast</code></li>
<li><a
href="https://github.com/pytest-dev/pytest/commit/68524d48586e7f8d070fc1146e5ff90e770d0382"><code>68524d4</code></a>
Merge pull request <a
href="https://redirect.github.com/pytest-dev/pytest/issues/11993">#11993</a>
from pytest-dev/release-8.0.1</li>
<li><a
href="https://github.com/pytest-dev/pytest/commit/d7d320a15a1f8dae909e0aa71f20ab5daeaa42d3"><code>d7d320a</code></a>
Prepare release version 8.0.1</li>
<li>Additional commits viewable in <a
href="https://github.com/pytest-dev/pytest/compare/7.4.3...8.0.2">compare
view</a></li>
</ul>
</details>
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---
 poetry.lock    | 33 +++++++++++++++++++++++++++------
 pyproject.toml |  2 +-
 2 files changed, 28 insertions(+), 7 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 8290624..3c82a77 100644
--- a/poetry.lock
+++ b/poetry.lock
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@@ -1091,20 +1101,20 @@ files = [
 
 [[package]]
 name = "pytest"
-version = "7.4.3"
+version = "8.0.2"
 description = "pytest: simple powerful testing with Python"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "pytest-7.4.3-py3-none-any.whl", hash = "sha256:0d009c083ea859a71b76adf7c1d502e4bc170b80a8ef002da5806527b9591fac"},
-    {file = "pytest-7.4.3.tar.gz", hash = "sha256:d989d136982de4e3b29dabcc838ad581c64e8ed52c11fbe86ddebd9da0818cd5"},
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 ]
 
 [package.dependencies]
 colorama = {version = "*", markers = "sys_platform == \"win32\""}
 iniconfig = "*"
 packaging = "*"
-pluggy = ">=0.12,<2.0"
+pluggy = ">=1.3.0,<2.0"
 
 [package.extras]
 testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "setuptools", "xmlschema"]
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     {file = "PyYAML-6.0.1-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:a0cd17c15d3bb3fa06978b4e8958dcdc6e0174ccea823003a106c7d4d7899ac5"},
     {file = "PyYAML-6.0.1-cp38-cp38-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:28c119d996beec18c05208a8bd78cbe4007878c6dd15091efb73a30e90539696"},
     {file = "PyYAML-6.0.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:7e07cbde391ba96ab58e532ff4803f79c4129397514e1413a7dc761ccd755735"},
+    {file = "PyYAML-6.0.1-cp38-cp38-musllinux_1_1_x86_64.whl", hash = "sha256:49a183be227561de579b4a36efbb21b3eab9651dd81b1858589f796549873dd6"},
     {file = "PyYAML-6.0.1-cp38-cp38-win32.whl", hash = "sha256:184c5108a2aca3c5b3d3bf9395d50893a7ab82a38004c8f61c258d4428e80206"},
     {file = "PyYAML-6.0.1-cp38-cp38-win_amd64.whl", hash = "sha256:1e2722cc9fbb45d9b87631ac70924c11d3a401b2d7f410cc0e3bbf249f2dca62"},
     {file = "PyYAML-6.0.1-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:9eb6caa9a297fc2c2fb8862bc5370d0303ddba53ba97e71f08023b6cd73d16a8"},
@@ -1176,6 +1196,7 @@ files = [
     {file = "PyYAML-6.0.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:5773183b6446b2c99bb77e77595dd486303b4faab2b086e7b17bc6bef28865f6"},
     {file = "PyYAML-6.0.1-cp39-cp39-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:b786eecbdf8499b9ca1d697215862083bd6d2a99965554781d0d8d1ad31e13a0"},
     {file = "PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:bc1bf2925a1ecd43da378f4db9e4f799775d6367bdb94671027b73b393a7c42c"},
+    {file = "PyYAML-6.0.1-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:04ac92ad1925b2cff1db0cfebffb6ffc43457495c9b3c39d3fcae417d7125dc5"},
     {file = "PyYAML-6.0.1-cp39-cp39-win32.whl", hash = "sha256:faca3bdcf85b2fc05d06ff3fbc1f83e1391b3e724afa3feba7d13eeab355484c"},
     {file = "PyYAML-6.0.1-cp39-cp39-win_amd64.whl", hash = "sha256:510c9deebc5c0225e8c96813043e62b680ba2f9c50a08d3724c7f28a747d1486"},
     {file = "PyYAML-6.0.1.tar.gz", hash = "sha256:bfdf460b1736c775f2ba9f6a92bca30bc2095067b8a9d77876d1fad6cc3b4a43"},
@@ -1658,4 +1679,4 @@ pyyaml = ">=6.0,<7.0"
 [metadata]
 lock-version = "2.0"
 python-versions = "^3.11"
-content-hash = "b47f6f68a9e84a1d893734057fdb8ef307c5d187dc2b9c4abedde28ce55a69ba"
+content-hash = "9d8b1ad556fa219df8b1511dea024a019db9e719b135f6827234fb3345b0120e"
diff --git a/pyproject.toml b/pyproject.toml
index 2752957..d1f99a1 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -21,7 +21,7 @@ google-crc32c = "^1.1.2"
 black = "^23.9.1"
 flake8 = "^6.1.0"
 coverage = "^7.3.1"
-pytest = "^7.4.2"
+pytest = ">=7.4.2,<9.0.0"
 snakemake = {git="https://github.com/snakemake/snakemake.git"}
 
 [build-system]

From f61e8d0e3b83d3b03ad2eb41ceb0c5902345ef48 Mon Sep 17 00:00:00 2001
From: Jai Desai <44884343+jairav@users.noreply.github.com>
Date: Fri, 8 Mar 2024 14:13:44 -0700
Subject: [PATCH 2/3] fix: repair GCS query string (#26)

This addresses #19 , #18 and #25.
---
 pyproject.toml                           | 2 ++
 snakemake_storage_plugin_gcs/__init__.py | 6 +++---
 tests/tests.py                           | 4 ++--
 3 files changed, 7 insertions(+), 5 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index d1f99a1..dbd8481 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -14,6 +14,8 @@ keywords = ["snakemake", "storage", "plugin", "google cloud storage"]
 
 [tool.poetry.dependencies]
 python = "^3.11"
+snakemake-interface-common = "^1.14.2"
+snakemake-interface-storage-plugins = "^3.0.0"
 google-cloud-storage = "^2.12.0"
 google-crc32c = "^1.1.2"
 
diff --git a/snakemake_storage_plugin_gcs/__init__.py b/snakemake_storage_plugin_gcs/__init__.py
index ff0e718..31a4311 100644
--- a/snakemake_storage_plugin_gcs/__init__.py
+++ b/snakemake_storage_plugin_gcs/__init__.py
@@ -189,11 +189,11 @@ def is_valid_query(cls, query: str) -> StorageQueryValidationResult:
                 valid=False,
                 reason=f"cannot be parsed as URL ({e})",
             )
-        if parsed.scheme != "gcs":
+        if parsed.scheme != "gs":
             return StorageQueryValidationResult(
                 query=query,
                 valid=False,
-                reason="must start with gcs (gcs://...)",
+                reason="must start with gs (gs://...)",
             )
         return StorageQueryValidationResult(
             query=query,
@@ -207,7 +207,7 @@ def example_queries(cls) -> List[ExampleQuery]:
         """
         return [
             ExampleQuery(
-                query="gcs://mybucket/myfile.txt",
+                query="gs://mybucket/myfile.txt",
                 type=QueryType.ANY,
                 description="A file in an google storage (GCS) bucket",
             )
diff --git a/tests/tests.py b/tests/tests.py
index 8c505be..3ae0628 100644
--- a/tests/tests.py
+++ b/tests/tests.py
@@ -16,12 +16,12 @@ class TestStorage(TestStorageBase):
     __test__ = True
 
     def get_query(self, tmp_path) -> str:
-        return "gcs://snakemake-test-bucket/test-file.txt"
+        return "gs://snakemake-test-bucket/test-file.txt"
 
     def get_query_not_existing(self, tmp_path) -> str:
         bucket = uuid.uuid4().hex
         key = uuid.uuid4().hex
-        return f"gcs://{bucket}/{key}"
+        return f"gs://{bucket}/{key}"
 
     def get_storage_provider_cls(self) -> Type[StorageProviderBase]:
         # Return the StorageProvider class of this plugin

From 2156981d1f068f6d066444fd3a9eaa3227ebc019 Mon Sep 17 00:00:00 2001
From: "github-actions[bot]"
 <41898282+github-actions[bot]@users.noreply.github.com>
Date: Sun, 10 Mar 2024 08:06:39 +0100
Subject: [PATCH 3/3] chore(main): release 0.1.4 (#27)

:robot: I have created a release *beep* *boop*
---


##
[0.1.4](https://github.com/snakemake/snakemake-storage-plugin-gcs/compare/v0.1.3...v0.1.4)
(2024-03-08)


### Bug Fixes

* repair GCS query string
([#26](https://github.com/snakemake/snakemake-storage-plugin-gcs/issues/26))
([f61e8d0](https://github.com/snakemake/snakemake-storage-plugin-gcs/commit/f61e8d0e3b83d3b03ad2eb41ceb0c5902345ef48))

---
This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
---
 CHANGELOG.md   | 7 +++++++
 pyproject.toml | 2 +-
 2 files changed, 8 insertions(+), 1 deletion(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index bb3403b..4c9a0c7 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,5 +1,12 @@
 # Changelog
 
+## [0.1.4](https://github.com/snakemake/snakemake-storage-plugin-gcs/compare/v0.1.3...v0.1.4) (2024-03-08)
+
+
+### Bug Fixes
+
+* repair GCS query string ([#26](https://github.com/snakemake/snakemake-storage-plugin-gcs/issues/26)) ([f61e8d0](https://github.com/snakemake/snakemake-storage-plugin-gcs/commit/f61e8d0e3b83d3b03ad2eb41ceb0c5902345ef48))
+
 ## [0.1.3](https://github.com/snakemake/snakemake-storage-plugin-gcs/compare/v0.1.2...v0.1.3) (2023-12-20)
 
 
diff --git a/pyproject.toml b/pyproject.toml
index dbd8481..fe74e37 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "snakemake-storage-plugin-gcs"
-version = "0.1.3"
+version = "0.1.4"
 description = "A Snakemake storage plugin for Google Cloud Storage"
 authors = [
     "Vanessa Sochat <sochat1@llnl.gov>",