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Job Using googlebatch-container #54

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stasaki opened this issue Aug 17, 2024 · 1 comment
Open

Job Using googlebatch-container #54

stasaki opened this issue Aug 17, 2024 · 1 comment

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@stasaki
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stasaki commented Aug 17, 2024

I've been trying to run a job using googlebatch-container but haven't been able to get it to work. It seems like I'm missing something in the configuration or setup. Could you provide a working example of how to use googlebatch-container?

@stasaki
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stasaki commented Aug 17, 2024

This is a Snakemake file that stops working when I include the googlebatch_container and googlebatch_image_family options. The Snakemake file works fine without these options.

#Snakefile ####
rule all:
input:
"output.txt",

rule ls:
output:
"output.txt"
resources:
googlebatch_container="snakemake/snakemake:v8.18.0"
googlebatch_image_family="batch-cos-stable-official"
shell:
"""
ls > {output}
"""

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