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Issue with gs plugin #24

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vsoch opened this issue Jan 3, 2024 · 0 comments
Open

Issue with gs plugin #24

vsoch opened this issue Jan 3, 2024 · 0 comments

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@vsoch
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vsoch commented Jan 3, 2024

Hey @johanneskoester ! I've hit this today (working on preemption) and last night with kueue - the latest snakemake container is having an issue with the storage plugins it seems?

__main__.py: error: unrecognized arguments: --storage-gs-keep-local --storage-gs-stay-on-remote False --storage-gs-retries 5

At a high level, I don't understand the setup of these storage plugins and might need your help working on it further. Aside from manually removing these flags from the command (which I did for kueue so it would run) what would you suggest for a next step?

I will link the current PR for preemption following posting this issue.
@vsoch vsoch mentioned this issue Jan 3, 2024
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johanneskoester added a commit that referenced this issue Jan 19, 2024
@vsoch @johanneskoester
feat: preemption (#25)
d6913a1 
This is a WIP because there is a bug #24 with what looks to be the
google storage plugin installed. Ping @johanneskoester I need to get #24
fixed before can proceed with more features here. Happy New Year!

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Signed-off-by: vsoch <[email protected]>
Co-authored-by: vsoch <[email protected]>
Co-authored-by: Johannes Köster <[email protected]>
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