diff --git a/.github/workflows/conventional-prs.yml b/.github/workflows/conventional-prs.yml index 2a5b86f..a4fb0bf 100644 --- a/.github/workflows/conventional-prs.yml +++ b/.github/workflows/conventional-prs.yml @@ -11,7 +11,7 @@ jobs: title-format: runs-on: ubuntu-latest steps: - - uses: amannn/action-semantic-pull-request@v3.4.0 + - uses: amannn/action-semantic-pull-request@v5.2.0 env: GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} with: diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index 5d28ca0..8d938e2 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -11,9 +11,9 @@ jobs: Formatting: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v2 + - uses: actions/checkout@v3 - name: Formatting - uses: github/super-linter@v4 + uses: super-linter/super-linter@v5 env: VALIDATE_ALL_CODEBASE: false DEFAULT_BRANCH: main @@ -23,9 +23,9 @@ jobs: Linting: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v2 + - uses: actions/checkout@v3 - name: Lint workflow - uses: snakemake/snakemake-github-action@v1.24.0 + uses: snakemake/snakemake-github-action@v1.25.1 with: directory: . snakefile: workflow/Snakefile @@ -37,17 +37,17 @@ jobs: - Linting - Formatting steps: - - uses: actions/checkout@v2 + - uses: actions/checkout@v3 - name: Test workflow - uses: snakemake/snakemake-github-action@v1.24.0 + uses: snakemake/snakemake-github-action@v1.25.1 with: directory: .test snakefile: workflow/Snakefile args: "--use-conda --show-failed-logs --cores 3 --conda-cleanup-pkgs cache --all-temp" - name: Test report - uses: snakemake/snakemake-github-action@v1.24.0 + uses: snakemake/snakemake-github-action@v1.25.1 with: directory: .test snakefile: workflow/Snakefile diff --git a/.github/workflows/release-please.yml b/.github/workflows/release-please.yml index a3e26fb..3c16737 100644 --- a/.github/workflows/release-please.yml +++ b/.github/workflows/release-please.yml @@ -10,7 +10,7 @@ jobs: runs-on: ubuntu-latest steps: - - uses: GoogleCloudPlatform/release-please-action@v2 + - uses: GoogleCloudPlatform/release-please-action@v3 id: release with: release-type: go # just keep a changelog, no version anywhere outside of git tags diff --git a/README.md b/README.md index aab998b..1ef5f84 100644 --- a/README.md +++ b/README.md @@ -11,7 +11,7 @@ A Snakemake workflow for `` The usage of this workflow is described in the [Snakemake Workflow Catalog](https://snakemake.github.io/snakemake-workflow-catalog/?usage=%2F). -If you use this workflow in a paper, don't forget to give credits to the authors by citing the URL of this (original) sitory and its DOI (see above). +If you use this workflow in a paper, don't forget to give credits to the authors by citing the URL of this (original) ``sitory and its DOI (see above). # TODO