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If I set space_order=32 along with limit_m=true then I get dobs=NAN.
To get it work I need to explicitly set dt_comp=1.0 along with the previous two options.
Here is the modified modeling_basic_2d example that produces NAN array:
#' # Modeling and inversion with JUDI#' ---#' title: Overview of JUDI modeling and inversion usage#' author: Mathias Louboutin, Philipp Witte#' date: April 2022#' ---#' This example script is written using [Weave.jl](https://github.com/JunoLab/Weave.jl) and can be converted to different format for documentation and usage#' This example is converted to a markdown file for the documentation.#' # Import JUDI, Linear algebra utilities and Plottingusing JUDI, PyPlot, LinearAlgebra
#+ echo = false; results = "hidden"close("all")
#' # Create a JUDI model structure#' In JUDI, a `Model` structure contains the grid information (origin, spacing, number of gridpoints)#' and the physical parameters. The squared slowness is always required as the base physical parameter for propagation. In addition,#' JUDI supports additional physical representations. First we accept `density` that can either be a direct input `Model(n, d, o, m, rho)` or#' an optional keyword argument `Model(n,d,o,m;rho=rho)`. Second, we also provide VTI/TTI kernels parametrized by the THomsen parameters that can be input as keyword arguments#' `Model(n,d,o,m; rho=rho, epsilon=epsilon;delta=delta,theta=theta,phi=phi)`. Because the thomsen parameters are optional the propagator wil lonloy use the ones provided. #' For example `Model(n,d,o,m; rho=rho, epsilon=epsilon;delta=delta)` will infer a VTI propagation#' ## Create discrete parameters# Set up model structure
n = (120, 100) # (x,y,z) or (x,z)
d = (10., 10.)
o = (0., 0.)
# Velocity [km/s]
v =ones(Float32,n) .+0.5f0
v0 =ones(Float32,n) .+0.5f0
v[:,Int(round(end/2)-30):end] .=3.5f0
rho = (v0 .+ .5f0) ./2# Slowness squared [s^2/km^2]
m = (1f0./ v).^2
m0 = (1f0./ v0).^2
dm =vec(m0 - m)
# Setup model structure
nsrc =2# number of sources
model =Model(n, d, o, m, nb=40)
#' # Create acquisition geometry#' In this simple usage example, we create a simple acquisiton by hand. In practice the acquisition geometry will be defined by the dataset#' beeing inverted. We show in a spearate tutorial how to use [SegyIO.jl](https://github.com/slimgroup/SegyIO.jl) to handle SEGY seismic datasets in JUDI.#' ## Create source and receivers positions at the surface# Set up receiver geometry
nxrec =120
xrec =range(0f0, stop=(n[1]-1)*d[1], length=nxrec)
yrec =0f0# WE have to set the y coordiante to zero (or any number) for 2D modeling
zrec =range(10f0, stop=10f0, length=nxrec)
# receiver sampling and recording time
timeD =1250f0# receiver recording time [ms]
dtD =2f0# receiver sampling interval [ms]# Set up receiver structure
recGeometry =Geometry(xrec, yrec, zrec; dt=dtD, t=timeD, nsrc=nsrc)
#' The source geometry is a but different. Because we want to create a survey with `nsrc` shot records, we need#' to convert the vector of sources postions `[s0, s1, ... sn]` into an array of array [[s0], [s1], ...] so that#' JUDI understands that this is a set of indepednet `nsrc`
xsrc =convertToCell(range(0f0, stop=(n[1]-1)*d[1], length=nsrc))
ysrc =convertToCell(range(0f0, stop=0f0, length=nsrc))
zsrc =convertToCell(range(10f0, stop=10f0, length=nsrc))
# Set up source structure
srcGeometry =Geometry(xsrc, ysrc, zsrc; dt=dtD, t=timeD)
#' # Source judiVector#' Finally, with the geometry defined, we can create a source wavelet (a simple Ricker wavelet here) a our first `judiVector`#' In JUDI, a `judiVector` is the core structure that represent a acquisition-geometry based dataset. This structure encapsulate#' the physical locations (trace coordinates) and corrsponding data trace in a source-based structure. for a given `judiVector` `d` then#' `d[1]` will be the shot record for the first source, or in the case of the source term, the first source wavelet and its positon.# setup wavelet
f0 =0.01f0# kHz
wavelet =ricker_wavelet(timeD, dtD, f0)
q =judiVector(srcGeometry, wavelet)
#' # Modeling#' With our survey and subsurface model setup, we can now model and image seismic data. We first define a few options. In this tutorial#' we will choose to compute gradients/images subsampling the forward wavefield every two time steps `subsampling_factor=2` and we fix the computational#' time step to be `1ms` wiuth `dt_comp=1.0` know to satisfy the CFL condition for this simple example. In practice, when `dt_comp` isn't provided, JUDI will compute the CFL#' condition for the propagation.# Setup options
opt =Options(subsampling_factor=2, space_order=32, limit_m=true, buffer_size=0f0)
#' Linear Operators#' The core idea behind JUDI is to abstract seismic inverse problems in term of linear algebra. In its simplest form, seismic inversion can be formulated as#' ```math#' \underset{\mathbf{m}}{\text{argmin}} \ \ \phi(\mathbf{m}) = \frac{1}{2} ||\mathbf{P}_r \mathbf{F}(\mathbf{m}) \mathbf{P}_s^{\top} \mathbf{q} - \mathbf{d} ||_2^2 \\#' \text{ } \\#' \nabla_{\mathbf{m}} \phi(\mathbf{m}) = \mathbf{J}(\mathbf{m}, \mathbf{q})^{\top} (\mathbf{P}_r \mathbf{F}(\mathbf{m}) \mathbf{P}_s^{\top} \mathbf{q} - \mathbf{d})#' ```#' #' where $\mathbf{P}_r$ is the receiver projection (measurment operator) and $\mathbf{P}_s^{\top}$ is the source injection operator (adjoint of measurment at the source location).#' Therefore, we bastracted these operation to be able to define these operators# Setup operators
Pr =judiProjection(recGeometry)
F =judiModeling(model; options=opt)
Ps =judiProjection(srcGeometry)
#' # Model and image data#' We first model synthetic data using our defined source and true model # Nonlinear modeling
dobs = Pr*F*adjoint(Ps)*q
#' Plot the shot record
fig =figure()
imshow(dobs.data[1], vmin=-1, vmax=1, cmap="PuOr", extent=[xrec[1], xrec[end], timeD/1000, 0], aspect="auto")
xlabel("Receiver position (m)")
ylabel("Time (s)")
title("Synthetic data")
display(fig)
The text was updated successfully, but these errors were encountered:
It seems same NAN problem appears even when I simply pass a single argument: opt = Options(space_order=20). I.e the number of points shoud be <= 16 the computations to work.
Hi,
Devito
v4.8.1
JUDI
v3.3.5
If I set
space_order=32
along withlimit_m=true
then I getdobs=NAN
.To get it work I need to explicitly set
dt_comp=1.0
along with the previous two options.Here is the modified modeling_basic_2d example that produces NAN array:
The text was updated successfully, but these errors were encountered: