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R_sessionInfo.txt
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R version 3.6.3 (2020-02-29)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Debian GNU/Linux 10 (buster)
Matrix products: default
BLAS/LAPACK: /usr/lib/x86_64-linux-gnu/libopenblasp-r0.3.5.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=C LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] grid stats4 parallel stats graphics utils datasets grDevices methods base
other attached packages:
[1] RCAS_1.12.0 Gviz_1.30.3 apeglm_1.8.0 DESeq2_1.26.0 SummarizedExperiment_1.16.1 DelayedArray_0.12.3 BiocParallel_1.20.1
[8] matrixStats_0.58.0 ggunchained_0.0.1 extrafont_0.17 rio_0.5.26 magick_2.7.1 gridGraphics_0.5-1 cowplot_1.1.1
[15] fgsea_1.12.0 Rcpp_1.0.4.6 SRAdb_1.48.2 RCurl_1.98-1.3 RSQLite_2.2.6 motifRG_1.30.0 seqLogo_1.52.0
[22] topGO_2.38.1 SparseM_1.81 GO.db_3.10.0 graph_1.64.0 DT_0.13 plotly_4.9.3 genomation_1.18.0
[29] BSgenome.Hsapiens.UCSC.hg19_1.4.0 BSgenome_1.54.0 ellipse_0.4.2 motifStack_1.30.0 ade4_1.7-16 MotIV_1.42.0 grImport2_0.2-0
[36] Rsamtools_2.2.3 rtracklayer_1.46.0 GenomicFeatures_1.38.2 AnnotationDbi_1.48.0 Biobase_2.46.0 Biostrings_2.54.0 XVector_0.26.0
[43] ggpubr_0.4.0 ggrepel_0.9.1 magrittr_2.0.1 Hmisc_4.5-0 Formula_1.2-4 survival_3.1-12 lattice_0.20-41
[50] data.table_1.14.0 reshape2_1.4.4 forcats_0.5.1 stringr_1.4.0 dplyr_1.0.5 purrr_0.3.4 readr_1.4.0
[57] tidyr_1.1.3 tibble_3.1.1 ggplot2_3.3.3 tidyverse_1.3.1 plyranges_1.6.10 GenomicRanges_1.38.0 GenomeInfoDb_1.22.1
[64] IRanges_2.20.2 S4Vectors_0.24.4 BiocGenerics_0.32.0 config_0.3.1 devtools_2.3.0 usethis_1.6.0 BiocManager_1.30.10
loaded via a namespace (and not attached):
[1] rappdirs_0.3.3 ggthemes_4.2.4 coda_0.19-4 bit64_4.0.5 knitr_1.32 rpart_4.1-15 GEOquery_2.54.1 AnnotationFilter_1.10.0 generics_0.1.0
[10] callr_3.6.0 proxy_0.4-25 bit_4.0.4 xml2_1.3.2 lubridate_1.7.10 assertthat_0.2.1 xfun_0.22 hms_1.0.0 evaluate_0.14
[19] fansi_0.4.1 progress_1.2.2 dbplyr_2.1.1 readxl_1.3.1 DBI_1.1.1 geneplotter_1.64.0 htmlwidgets_1.5.3 ellipsis_0.3.0 backports_1.1.6
[28] annotate_1.64.0 gridBase_0.4-7 biomaRt_2.42.1 vctrs_0.3.7 remotes_2.1.1 ensembldb_2.10.2 abind_1.4-5 withr_2.4.2 bdsmatrix_1.3-4
[37] checkmate_2.0.0 GenomicAlignments_1.22.1 rGADEM_2.34.1 prettyunits_1.1.1 cluster_2.1.0 lazyeval_0.2.2 crayon_1.4.1 genefilter_1.68.0 pkgconfig_2.0.3
[46] ProtGenerics_1.18.0 pkgload_1.0.2 nnet_7.3-13 rlang_0.4.10 lifecycle_1.0.0 extrafontdb_1.0 BiocFileCache_1.10.2 modelr_0.1.8 seqPattern_1.18.0
[55] dichromat_2.0-0 cellranger_1.1.0 rprojroot_2.0.3 ggseqlogo_0.1 Matrix_1.2-18 carData_3.0-4 reprex_2.0.0 base64enc_0.1-3 pheatmap_1.0.12
[64] processx_3.5.1 png_0.1-7 viridisLite_0.4.0 bitops_1.0-6 KernSmooth_2.23-16 blob_1.2.1 jpeg_0.1-8.1 rstatix_0.7.0 ggsignif_0.6.1
[73] scales_1.1.1 memoise_1.1.0 plyr_1.8.6 zlibbioc_1.32.0 compiler_3.6.3 bbmle_1.0.23.1 RColorBrewer_1.1-2 plotrix_3.8-1 cli_2.4.0
[82] pbapply_1.4-3 ps_1.3.2 htmlTable_2.1.0 MASS_7.3-51.5 tidyselect_1.1.0 stringi_1.4.6 emdbook_1.3.12 yaml_2.2.1 askpass_1.1
[91] locfit_1.5-9.4 latticeExtra_0.6-29 VariantAnnotation_1.32.0 fastmatch_1.1-0 tools_3.6.3 rstudioapi_0.13 foreign_0.8-76 gridExtra_2.3 digest_0.6.25
[100] car_3.0-10 broom_0.7.6 org.Hs.eg.db_3.10.0 httr_1.4.2 biovizBase_1.34.1 colorspace_2.0-0 rvest_1.0.0 XML_3.99-0.3 fs_1.4.1
[109] splines_3.6.3 sessioninfo_1.1.1 xtable_1.8-4 jsonlite_1.7.2 testthat_2.3.2 R6_2.4.1 pillar_1.6.0 htmltools_0.5.1.1 glue_1.4.0
[118] pkgbuild_1.0.6 mvtnorm_1.1-1 utf8_1.1.4 numDeriv_2016.8-1.1 curl_4.3 zip_2.1.1 openxlsx_4.2.3 openssl_1.4.1 Rttf2pt1_1.3.8
[127] limma_3.42.2 rmarkdown_2.7 desc_1.2.0 munsell_0.5.0 GenomeInfoDbData_1.2.2 impute_1.60.0 haven_2.4.0 gtable_0.3.0