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purge_haplotigs readhist: only have one peak on my histogram #4

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Hannah1746 opened this issue Aug 3, 2020 · 1 comment
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@Hannah1746
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I am tryin to run this application on a genome with extremely high heterozygosity that was sequenced at about 20x coverage. This is the histogram that came out of readhist and I was hoping I could get advice -l -m and -h for contigcov.
BW_racon3 pilon2 mapped bam histogram

@Hannah1746 Hannah1746 changed the title purge_haplotigs readhist: only have one histogram purge_haplotigs readhist: only have one peak on my histogram Aug 3, 2020
@ITGMT
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ITGMT commented Jul 27, 2022

Hello, I am tryin to run this application on a genome with high heterozygosity that was sequenced at about 150x coverage of Pacbio reads(figure1) and 100x coverage of illumina reads(figure2).
I got the following two histograms and I was hoping I could get advice -l -m and -h for contigcov. Thank you

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