diff --git a/LetsEncrypt-SiteExtension/Controllers/HomeController.cs b/LetsEncrypt-SiteExtension/Controllers/HomeController.cs
index 70097e8..597494b 100644
--- a/LetsEncrypt-SiteExtension/Controllers/HomeController.cs
+++ b/LetsEncrypt-SiteExtension/Controllers/HomeController.cs
@@ -62,6 +62,7 @@ public async Task<ActionResult> Index(AuthenticationModel model)
                             return View(model);
                         }
                         var webappsettings = client.WebApps.ListSiteOrSlotAppSettings(model.ResourceGroupName, model.WebAppName, model.SiteSlotName);
+                        var connectionStrings = client.WebApps.ListConnectionStrings(model.ResourceGroupName, model.WebAppName);
                         if (model.UpdateAppSettings)
                         {
                             var newAppSettingsValues = new Dictionary<string, string>{
@@ -74,6 +75,13 @@ public async Task<ActionResult> Index(AuthenticationModel model)
                                 { AppSettingsAuthConfig.servicePlanResourceGroupNameKey, model.ServicePlanResourceGroupName },
                                 { AppSettingsAuthConfig.useIPBasedSSL, model.UseIPBasedSSL.ToString().ToLowerInvariant() }
                             };
+
+                            var newConnectionStrings = new Dictionary<string, string>
+                            {
+                                { AppSettingsAuthConfig.webjobDashboard, model.DashboardConnectionString },
+                                { AppSettingsAuthConfig.webjobStorage, model.StorageConnectionString }
+                            };
+
                             foreach (var appsetting in newAppSettingsValues)
                             {
                                 if (!webappsettings.Properties.ContainsKey(appsetting.Key))
@@ -86,8 +94,22 @@ public async Task<ActionResult> Index(AuthenticationModel model)
                                 }
                             }
 
+                            foreach (var connString in newConnectionStrings)
+                            {
+                                if (!connectionStrings.Properties.ContainsKey(connString.Key))
+                                {
+                                    connectionStrings.Properties.Add(connString.Key, new ConnStringValueTypePair(connString.Value, ConnectionStringType.Custom));
+                                }
+                                else
+                                {
+                                    connectionStrings.Properties[connString.Key] = new ConnStringValueTypePair(connString.Value, ConnectionStringType.Custom);
+                                }
+                            }
+
                             client.WebApps.UpdateSiteOrSlotAppSettings(model.ResourceGroupName, model.WebAppName, model.SiteSlotName, webappsettings);
+                            client.WebApps.UpdateConnectionStrings(model.ResourceGroupName, model.WebAppName, connectionStrings);
                             ConfigurationManager.RefreshSection("appSettings");
+                            ConfigurationManager.RefreshSection("connectionStrings");
                             
                             await path.ChallengeDirectory(true);
                         }
diff --git a/LetsEncrypt-SiteExtension/Models/AuthenticationModel.cs b/LetsEncrypt-SiteExtension/Models/AuthenticationModel.cs
index 3ace706..47aa2f2 100644
--- a/LetsEncrypt-SiteExtension/Models/AuthenticationModel.cs
+++ b/LetsEncrypt-SiteExtension/Models/AuthenticationModel.cs
@@ -46,6 +46,18 @@ public bool UseIPBasedSSL
             get; set;
         }
 
+        [Required]
+        public string DashboardConnectionString
+        {
+            get; set;
+        }
+
+        [Required]
+        public string StorageConnectionString
+        {
+            get; set;
+        }
+
         [Display(Name = "Update Application Settings and Virtual Directory (if needed)")]
         public bool UpdateAppSettings
         {
@@ -113,6 +125,8 @@ public static explicit operator AuthenticationModel(AppSettingsAuthConfig config
                 SiteSlotName = config.SiteSlotName,
                 WebRootPath = config.WebRootPath,
                 RunFromPackage = config.RunFromPackage,
+                DashboardConnectionString = config.DashboardConnectionString,
+                StorageConnectionString = config.StorageConnectionString,
             };
         }
     }
diff --git a/LetsEncrypt-SiteExtension/Views/Home/Index.cshtml b/LetsEncrypt-SiteExtension/Views/Home/Index.cshtml
index f80193c..22c8ca4 100644
--- a/LetsEncrypt-SiteExtension/Views/Home/Index.cshtml
+++ b/LetsEncrypt-SiteExtension/Views/Home/Index.cshtml
@@ -113,21 +113,21 @@
 
     @if (Model.RunFromPackage && string.IsNullOrEmpty(Environment.GetEnvironmentVariable(LetsEncrypt.Azure.Core.Models.AppSettingsAuthConfig.webRootPath)))
     {
-    <div class="alert alert-warning" role="alert">
-        <p>Web Site was deployed using "Run From Package", the site extension will have to configure a virtual directory to ensure the challenge file can be browsable at http://your-site/.well-known/acme-challenge. </p>
+        <div class="alert alert-warning" role="alert">
+            <p>Web Site was deployed using "Run From Package", the site extension will have to configure a virtual directory to ensure the challenge file can be browsable at http://your-site/.well-known/acme-challenge. </p>
 
-        <p>If you already host content under /.well-known then you should not continue, instead you should follow the manual setup procedure at <a href="https://github.com/sjkp/letsencrypt-siteextension/wiki/Run-From-Package">https://github.com/sjkp/letsencrypt-siteextension/wiki/Run-From-Package</a></p>
-    </div>
+            <p>If you already host content under /.well-known then you should not continue, instead you should follow the manual setup procedure at <a href="https://github.com/sjkp/letsencrypt-siteextension/wiki/Run-From-Package">https://github.com/sjkp/letsencrypt-siteextension/wiki/Run-From-Package</a></p>
+        </div>
     }
     @Html.ValidationSummary(true, "", new { @class = "text-danger" })
     @{
-    var authModel = (Model as LetsEncrypt.SiteExtension.Models.AuthenticationModel);
+        var authModel = (Model as LetsEncrypt.SiteExtension.Models.AuthenticationModel);
     }
     @if (authModel != null && authModel.Error)
     {
-    <div class="alert alert-danger" role="alert">
-        @authModel.ErrorMessage
-    </div>
+        <div class="alert alert-danger" role="alert">
+            @authModel.ErrorMessage
+        </div>
     }
     <div class="form-group">
         @Html.LabelFor(model => model.Tenant, htmlAttributes: new { @class = "control-label col-md-2" })
@@ -198,6 +198,20 @@
             @Html.ValidationMessageFor(model => model.SiteSlotName, "", new { @class = "text-danger" })
         </div>
     </div>
+    <div class="form-group">
+        @Html.LabelFor(model => model.DashboardConnectionString, htmlAttributes: new { @class = "control-label col-md-2" })
+        <div class="col-md-10">
+            @Html.EditorFor(model => model.DashboardConnectionString, new { htmlAttributes = new { @class = "form-control" } })
+            @Html.ValidationMessageFor(model => model.DashboardConnectionString, "", new { @class = "text-danger" })
+        </div>
+    </div>
+    <div class="form-group">
+        @Html.LabelFor(model => model.StorageConnectionString, htmlAttributes: new { @class = "control-label col-md-2" })
+        <div class="col-md-10">
+            @Html.EditorFor(model => model.StorageConnectionString, new { htmlAttributes = new { @class = "form-control" } })
+            @Html.ValidationMessageFor(model => model.StorageConnectionString, "", new { @class = "text-danger" })
+        </div>
+    </div>
     <div class="form-group">
         @Html.LabelFor(model => model.UpdateAppSettings, htmlAttributes: new { @class = "control-label col-md-2" })
         <div class="col-md-10">
diff --git a/LetsEncrypt.SiteExtension.Core/AppSettingsAuthConfig.cs b/LetsEncrypt.SiteExtension.Core/AppSettingsAuthConfig.cs
index d07d0ac..e47121d 100644
--- a/LetsEncrypt.SiteExtension.Core/AppSettingsAuthConfig.cs
+++ b/LetsEncrypt.SiteExtension.Core/AppSettingsAuthConfig.cs
@@ -35,6 +35,8 @@ public class AppSettingsAuthConfig : IAzureWebAppEnvironment, IAcmeConfig
         public const string authorizationChallengeBlobStorageAccount = "letsencrypt:AuthorizationChallengeBlobStorageAccount";
         public const string authorizationChallengeBlobStorageContainer = "letsencrypt:AuthorizationChallengeBlobStorageContainer";
         public const string disableVirtualApplication = "letsencrypt:DisableVirtualApplication";
+        public const string webjobDashboard = "AzureWebJobsDashboard";
+        public const string webjobStorage = "AzureWebJobsStorage";
 
         public AppSettingsAuthConfig()
         {
@@ -109,6 +111,24 @@ public string WebAppName
             }
         }
 
+        [Required(ErrorMessage = webjobDashboard + " connectionString is required")]
+        public string DashboardConnectionString
+        {
+            get
+            {
+                return ConfigurationManager.ConnectionStrings[webjobDashboard].ConnectionString;
+            }
+        }
+
+        [Required(ErrorMessage = webjobStorage + " connectionString is required")]
+        public string StorageConnectionString
+        {
+            get
+            {
+                return ConfigurationManager.ConnectionStrings[webjobStorage].ConnectionString;
+            }
+        }
+
         public string WebRootPath
         {
             get