From a1b29be3df26e31c73dfc9bede551af17966ba2d Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Mon, 18 Dec 2023 05:22:34 +0000 Subject: [PATCH] Add changes --- _data/containers.yaml | 2654 +-- _data/repos.yml | 2753 +-- assets/js/repos.js | 35928 ++++++++++++++++++++-------------------- 3 files changed, 20665 insertions(+), 20670 deletions(-) diff --git a/_data/containers.yaml b/_data/containers.yaml index 2eb6f99b..5fe5ea68 100644 --- a/_data/containers.yaml +++ b/_data/containers.yaml @@ -62,265 +62,267 @@ bases: - count: 25 name: osrf/ros - count: 22 - name: khanlab/tar2bids + name: pennbbl/qsiprep - count: 22 name: nipreps/fmriprep -- count: 22 - name: pennbbl/qsiprep - count: 22 name: r-base - count: 22 name: continuumio/anaconda3 -- count: 18 - name: glotzerlab/software +- count: 22 + name: khanlab/tar2bids - count: 18 name: bensonyang88/tensorflow-rdma - count: 18 - name: nvcr.io/nvidia/nvhpc + name: glotzerlab/software - count: 18 - name: rocker/r-ver + name: nvcr.io/nvidia/nvhpc - count: 18 name: ezlabgva/busco +- count: 18 + name: rocker/r-ver - count: 16 name: rocker/tidyverse - count: 15 name: jtchilders/singularity_image_recipes -- count: 15 - name: khanlab/neuroglia-dwi - count: 15 name: ResearchIT/spack-singularity - count: 15 name: poldracklab/mriqc +- count: 15 + name: khanlab/neuroglia-dwi +- count: 14 + name: ebothmann/sherpa-singularity - count: 14 name: nipy/heudiconv - count: 14 name: mambaorg/micromamba -- count: 14 - name: ebothmann/sherpa-singularity - count: 14 name: shahzebmsiddiqui/default/easybuild - count: 13 name: nitishnarula/secure/ubuntu-focal -- count: 12 - name: khanlab/heudiconv -- count: 12 - name: conda/miniconda2 - count: 12 name: pawsey/openfoam - count: 12 - name: rocker/verse + name: openfluid/openfluid - count: 12 name: julia - count: 12 - name: openfluid/openfluid -- count: 12 - name: ufscar/ubuntu_ompi + name: conda/miniconda2 - count: 12 name: vitchyr/railrl-torch4cuda9 +- count: 12 + name: rocker/verse +- count: 12 + name: ufscar/ubuntu_ompi - count: 12 name: 'GodloveD/busybox ' +- count: 12 + name: khanlab/heudiconv - count: 11 - name: deeplearnphysics/larcv2 -- count: 11 - name: qiime2/core + name: sequana.img - count: 11 name: khanlab/hippunfold -- count: 11 - name: sequana.img - count: 11 name: hariszaf/pema - count: 11 - name: trinityrnaseq/trinityrnaseq + name: deeplearnphysics/larcv2 - count: 11 - name: golang + name: qiime2/core +- count: 11 + name: trinityrnaseq/trinityrnaseq - count: 11 name: rockylinux +- count: 11 + name: golang - count: 11 name: perl - count: 10 - name: khanlab/prepdwi + name: images/common.simg +- count: 10 + name: provarepro/openvino - count: 10 name: quay.io/vgteam/vg - count: 10 - name: images/common.simg + name: scientificlinux/sl - count: 10 name: intel/oneapi-hpckit - count: 10 - name: scientificlinux/sl -- count: 10 - name: provarepro/openvino -- count: 9 - name: DeepLearnPhysics/larcv3-singularity + name: khanlab/prepdwi - count: 9 name: nipreps/mriqc - count: 9 name: dcgc-bfx/dcgc-jupyter-rstudio - count: 9 - name: google/deepvariant + name: DeepLearnPhysics/larcv3-singularity - count: 9 name: ros +- count: 9 + name: google/deepvariant - count: 9 name: rust - count: 8 - name: quay.io/qiime2/core + name: kaitj/mrtpipelines - count: 8 - name: ewels/multiqc + name: arezaii/pf_singularity - count: 8 name: bids/rshrf - count: 8 - name: continuumio/anaconda + name: ewels/multiqc - count: 8 - name: slaclab/relion + name: quay.io/qiime2/core - count: 8 - name: arezaii/pf_singularity + name: slaclab/relion - count: 8 - name: drneavin/SingularityBaseImages + name: continuumio/anaconda - count: 8 name: dynverse/dynwrap - count: 8 - name: kaitj/mrtpipelines + name: tpall/singularity-r - count: 8 - name: bioconductor/release_core2 + name: nvcr.io/nvidia/deepstream - count: 8 - name: rocker/geospatial + name: drneavin/SingularityBaseImages - count: 8 - name: nvcr.io/nvidia/deepstream + name: rocker/geospatial - count: 8 name: bioconductor/bioconductor_docker - count: 8 - name: tpall/singularity-r -- count: 7 - name: khanlab/neuroglia-core + name: bioconductor/release_core2 - count: 7 - name: cpllab/language-models + name: jekriske/r-base - count: 7 - name: sebastientourbier/connectomemapper-bidsapp + name: pranithavangala/singularity - count: 7 name: nipreps/nibabies - count: 7 - name: jekriske/r-base -- count: 7 - name: bioconductor/bioconductor_full + name: sebastientourbier/connectomemapper-bidsapp - count: 7 name: mattocci/rstan - count: 7 - name: nickjer/singularity-rstudio + name: iarcbioinfo/mutect-nf - count: 7 - name: nickjer/singularity-r + name: cpllab/language-models - count: 7 - name: pranithavangala/singularity + name: bioconductor/bioconductor_full +- count: 7 + name: archlinux - count: 7 name: bids/example - count: 7 - name: thomasrobinson/centos7-netcdff + name: nickjer/singularity-r - count: 7 - name: archlinux + name: nickjer/singularity-rstudio - count: 7 - name: continuumio/miniconda2 + name: thomasrobinson/centos7-netcdff - count: 7 name: node +- count: 7 + name: anair17/railrl_hand_v2 - count: 7 name: singularityhub/ubuntu - count: 7 - name: iarcbioinfo/mutect-nf + name: continuumio/miniconda2 - count: 7 - name: anair17/railrl_hand_v2 -- count: 6 - name: khanlab/gradcorrect -- count: 6 - name: einar90/fieldopt + name: khanlab/neuroglia-core - count: 6 - name: nipreps/smriprep + name: elisadonnard/singularity - count: 6 - name: bids/mrtrix3_connectome + name: bensonyang88/hpl-cuda - count: 6 - name: metabat/metabat + name: gipert/default/arch-base - count: 6 name: barbagroup/petibm - count: 6 name: centos-7.7.1908.sif - count: 6 - name: gipert/default/arch-base -- count: 6 - name: anibali/pytorch + name: bud42/fs6 - count: 6 - name: i386/ubuntu + name: bids/mrtrix3_connectome - count: 6 - name: bensonyang88/hpl-cuda + name: nipreps/smriprep - count: 6 - name: ml4ai/UA-hpc-containers + name: conda/miniconda3-centos7 - count: 6 - name: bud42/fs6 + name: einar90/fieldopt - count: 6 name: openresty/openresty - count: 6 - name: broadinstitute/gatk + name: metabat/metabat - count: 6 - name: elisadonnard/singularity + name: openjdk - count: 6 - name: bids/hcppipelines + name: anibali/pytorch - count: 6 - name: conda/miniconda3-centos7 + name: archlinux/base - count: 6 - name: broadinstitute/gatk3 + name: broadinstitute/gatk - count: 6 - name: openjdk + name: bids/hcppipelines - count: 6 - name: gnuoctave/octave + name: bids/freesurfer +- count: 6 + name: ml4ai/UA-hpc-containers +- count: 6 + name: i386/ubuntu - count: 6 name: condaforge/mambaforge - count: 6 - name: archlinux/base + name: gnuoctave/octave - count: 6 - name: bids/freesurfer + name: broadinstitute/gatk3 +- count: 6 + name: khanlab/gradcorrect +- count: 5 + name: ../library/micromamba/micromamba_1.4.3.img - count: 5 name: sternacht/hpcc_openblas - count: 5 - name: singularity-hub.org/mikemhenry/cme-lab-images + name: shreyaskamathkm/cluster_images - count: 5 name: neuronets/kwyk - count: 5 - name: rockylinux/rockylinux -- count: 5 - name: alexpacheco/rstudio + name: ensemblorg/ensembl-vep - count: 5 - name: finalduty/archlinux + name: rocker/ml - count: 5 - name: letaylor/sc_qc_cluster + name: vanessa/pokemon - count: 5 - name: rocker/ml + name: vanessa/salad - count: 5 name: rocker/rstudio - count: 5 - name: ../library/micromamba/micromamba_1.4.3.img -- count: 5 - name: ensemblorg/ensembl-vep + name: singularity-hub.org/mikemhenry/cme-lab-images - count: 5 name: ufscar/ubuntu_mpich - count: 5 - name: shreyaskamathkm/cluster_images + name: rockylinux/rockylinux - count: 5 - name: vanessa/pokemon + name: finalduty/archlinux - count: 5 - name: vanessa/salad + name: alexpacheco/rstudio - count: 5 - name: genomicpariscentre/guppy-gpu + name: quay.io/biocontainers/bowtie2 - count: 5 - name: nextgenusfs/funannotate + name: genomicpariscentre/guppy-gpu - count: 5 name: combinelab/salmon - count: 5 - name: quay.io/biocontainers/bowtie2 -- count: 4 - name: twongjirad/ssnetcaffeserver + name: nextgenusfs/funannotate - count: 4 - name: registry.gitlab.com/rode0day/fuzzer-testing/aflpp_runner + name: nvcr.io/hpc/namd - count: 4 name: fempar/fempar-env - count: 4 - name: team113sanger/t113-singularity + name: /tmp/base.simg - count: 4 name: ISU-HPC/ml-base +- count: 4 + name: danabl/glimslib +- count: 4 + name: TomHarrop/singularity-containers +- count: 4 + name: willgpaik/qt5_aci - count: 4 name: mlgpu-base.tar - count: 4 @@ -328,1653 +330,1651 @@ bases: - count: 4 name: godloved/secure/centos8 - count: 4 - name: pndni/centos7-base -- count: 4 - name: bids/pymvpa + name: twongjirad/ssnetcaffeserver - count: 4 - name: sebastientourbier/mialsuperresolutiontoolkit + name: centos-7.7.1908-cuda-11.0.sif - count: 4 - name: repronim/reproin + name: magland/mlsing - count: 4 - name: rocker/r-ubuntu + name: mafreitas/singularity-openms - count: 4 - name: danabl/glimslib + name: team113sanger/t113-singularity - count: 4 - name: magland/mlsing + name: jupyter/datascience-notebook - count: 4 - name: slaclab/slac-jupyterlab + name: repronim/reproin - count: 4 - name: /tmp/base.simg + name: bids/pymvpa - count: 4 - name: kiwiroy/singularity-perlbrew + name: sebastientourbier/mialsuperresolutiontoolkit - count: 4 - name: centos-7.7.1908-cuda-11.0.sif + name: registry.gitlab.com/rode0day/fuzzer-testing/aflpp_runner - count: 4 - name: oliviermattelaer/singularity-recipe + name: dcgc-bfx/dcgc-base-conda - count: 4 name: matmu/vep - count: 4 - name: mafreitas/singularity-openms + name: kiwiroy/singularity-perlbrew - count: 4 - name: dcgc-bfx/dcgc-base-conda + name: mongo - count: 4 - name: TomHarrop/singularity-containers + name: rocker/r-ubuntu - count: 4 - name: rocker/shiny + name: slaclab/slac-jupyterlab - count: 4 - name: bvlc/caffe + name: rocker/shiny - count: 4 - name: nvcr.io/hpc/namd + name: ufscar/hpc/arch_spark - count: 4 - name: mongo + name: ufscar/hpc/cuda_pytorch - count: 4 - name: jupyter/datascience-notebook + name: pndni/centos7-base - count: 4 name: intel2021.2_netcdfc4.7.4_ubuntu.sif - count: 4 name: nvidia/cudagl - count: 4 - name: ufscar/hpc/cuda_pytorch + name: railrl_v9p5_cuda10-1_mj1-50-1-59_torch1-1-0_gym0-10-5_py3-5-2_local - count: 4 - name: ufscar/hpc/arch_spark + name: vitchyr/railrl-vitchyr-gpu-v4 - count: 4 - name: willgpaik/qt5_aci + name: vitchyr/railrl-v7-cuda8 - count: 4 - name: vitchyr/railrl-torch4cuda8-v7 + name: vitchyr/railrl-v8-cuda10-1 - count: 4 - name: vitchyr/railrl_v10_cuda10-1_mj2-0-2-2_torch0-4-1_gym0-10-5_py3-5-2 -- count: 4 - name: vitchyr/railrl-vitchyr-v5 -- count: 4 - name: vitchyr/railrl-v8-cuda10-1 -- count: 4 - name: railrl_v9p5_cuda10-1_mj1-50-1-59_torch1-1-0_gym0-10-5_py3-5-2_local + name: vitchyr/railrl_v11_cuda10-1_mj2-0-2-2_torch0-3-1_gym0-10-5_py3-5-2 - count: 4 name: vitchyr/railrl_v9_cuda10-1_mj1-50-1-59_torch0-4-1_gym0-10-5_py3-5-2 - count: 4 - name: vitchyr/railrl-vitchyr-gpu-v4 + name: vitchyr/railrl_v10_cuda10-1_mj2-0-2-2_torch0-4-1_gym0-10-5_py3-5-2 - count: 4 - name: vitchyr/railrl-v7-cuda8 + name: vitchyr/railrl-torch4cuda8-v7 - count: 4 - name: vitchyr/railrl_v11_cuda10-1_mj2-0-2-2_torch0-3-1_gym0-10-5_py3-5-2 + name: vitchyr/railrl-vitchyr-v5 - count: 4 name: vitchyr/railrl-tmp +- count: 4 + name: oliviermattelaer/singularity-recipe +- count: 4 + name: bvlc/caffe - count: 3 - name: ghcr.io/truatpasteurdotfr/singularity-docker-stream8-ci -- count: 3 - name: larbys/ubdl + name: r/r_3.5.1.simg - count: 3 - name: registry.gitlab.com/rode0day/fuzzer-testing/honggfuzz_runner + name: rstudio/r-base - count: 3 - name: jeffersonlab/jlabce + name: anair17/railrl-hand-v1a - count: 3 - name: r/r_3.5.1.simg + name: ../simgs/base.simg - count: 3 - name: DeepLearnPhysics/larcv2-singularity + name: darachm/itermae - count: 3 - name: quay.io/biocontainers/edta + name: uvarc/default/anaconda - count: 3 - name: biocontainers/fastqc + name: NuWro/builds - count: 3 - name: dtcenter/met + name: willgpaik/centos7_aci - count: 3 - name: /home/vfonov/src/minc-toolkit-containers/singularity/minc-toolkit-base.simg + name: willgpaik/centos8_roar - count: 3 - name: ../simgs/base.simg + name: granek/default/singularity-rstudio - count: 3 - name: aylab/fithichip + name: library/ubuntu - count: 3 name: pennbbl/xcpengine - count: 3 - name: library/ubuntu + name: base.simg - count: 3 - name: library/default/ubuntu + name: larbys/ubdl - count: 3 - name: bids/baracus + name: bstriner/tensorflow-cuda-10.0-cudnn7-devel-ubuntu16.04 - count: 3 - name: poldracklab/fitlins + name: bstriner/tensorflow-cuda-10.1-cudnn7-devel-ubuntu16.04 - count: 3 - name: richelbilderbeek/default/gcaer + name: library/default/ubuntu - count: 3 - name: richelbilderbeek/default/plinkr + name: /home/vfonov/src/minc-toolkit-containers/singularity/minc-toolkit-base.simg - count: 3 - name: darachm/itermae + name: biocontainers/fastqc - count: 3 name: mesnardo/petibm-decoupledibpm - count: 3 - name: uvarc/default/anaconda + name: nginx - count: 3 - name: bstriner/tensorflow-cuda-10.1-cudnn7-devel-ubuntu16.04 + name: fcpindi/c-pac - count: 3 - name: bstriner/tensorflow-cuda-10.0-cudnn7-devel-ubuntu16.04 + name: bud42/tracula - count: 3 - name: jupyter/r-notebook + name: bids/baracus - count: 3 - name: yh549848/r/rstudio + name: poldracklab/fitlins - count: 3 - name: alexpacheco/centos7 + name: arcsUVA/anaconda - count: 3 - name: ctpelok77/forbiditerative + name: ctpelok77/cerberus - count: 3 - name: biocorecrg/debian-perlbrew-pyenv3-java + name: registry.gitlab.com/rode0day/fuzzer-testing/honggfuzz_runner - count: 3 - name: slaclab/cryosparc-docker + name: brentp/smoove - count: 3 - name: intel/oneapi-basekit + name: jtduda/python-itk-sitk-ants - count: 3 - name: modakopt/containers + name: richelbilderbeek/default/gcaer - count: 3 - name: ubuntu_base/ + name: richelbilderbeek/default/plinkr - count: 3 - name: arcsUVA/anaconda + name: DeepLearnPhysics/larcv2-singularity - count: 3 - name: granek/default/singularity-rstudio + name: intel/oneapi-basekit - count: 3 - name: NuWro/builds + name: willprice/furnari-flow - count: 3 - name: fcpindi/c-pac + name: ghcr.io/truatpasteurdotfr/singularity-docker-stream8-ci - count: 3 - name: quay.io/fenicsproject/stable + name: quay.io/biocontainers/edta - count: 3 - name: computationalradiationphysics/picongpu + name: yh549848/r/rstudio - count: 3 - name: rapidsai/rapidsai + name: jupyter/r-notebook - count: 3 - name: rstudio/r-base + name: iarcbioinfo/alignment-nf - count: 3 - name: bud42/tracula + name: adigenova/nf-gene-fusions - count: 3 - name: ctpelok77/cerberus + name: iarcbioinfo/rnaseq-nf - count: 3 - name: nginx + name: slaclab/cryosparc-docker - count: 3 - name: nvcr.io/nvidia/mxnet + name: dtcenter/met - count: 3 - name: anair17/railrl-hand-v1a + name: biocorecrg/debian-perlbrew-pyenv3-java - count: 3 - name: willgpaik/centos8_roar + name: postgres - count: 3 - name: willgpaik/centos7_aci + name: aylab/fithichip - count: 3 - name: willprice/furnari-flow + name: trlandet/fenics-dev - count: 3 - name: accre.internal.base.sif + name: pcpaquette/tensorflow-serving +- count: 3 + name: pcpaquette/ubuntu-cuda10 - count: 3 name: /data/ubuntu-cuda10-20190226.sif - count: 3 - name: pcpaquette/tensorflow-serving + name: rapidsai/rapidsai - count: 3 - name: pcpaquette/ubuntu-cuda10 + name: i386/debian - count: 3 - name: brentp/smoove + name: accre.internal.base.sif - count: 3 - name: trlandet/fenics-dev + name: nvcr.io/nvidia/mxnet - count: 3 - name: sachet/polysolver + name: quay.io/fenicsproject/stable - count: 3 - name: iarcbioinfo/alignment-nf + name: ctpelok77/forbiditerative - count: 3 - name: iarcbioinfo/rnaseq-nf + name: jeffersonlab/jlabce - count: 3 - name: adigenova/nf-gene-fusions + name: computationalradiationphysics/picongpu - count: 3 - name: base.simg + name: ubuntu_base/ - count: 3 - name: postgres + name: modakopt/containers +- count: 3 + name: sachet/polysolver +- count: 3 + name: alexpacheco/centos7 - count: 3 name: quay.io/biocontainers/spades - count: 3 name: icaoberg/meme-suite - count: 3 name: quay.io/biocontainers/gatk4 -- count: 3 - name: i386/debian -- count: 3 - name: jtduda/python-itk-sitk-ants - count: 2 - name: chambm/wine-dotnet -- count: 2 - name: ghcr.io/truatpasteurdotfr/singularity-docker-centos7-ci -- count: 2 - name: twongjirad/docker-caffe-larbys-dlee-ssnet + name: library/mariadb - count: 2 - name: registry.gitlab.com/rode0day/fuzzer-testing/symcc_runner + name: vuiiscci/fmriqa - count: 2 - name: registry.gitlab.com/rode0day/fuzzer-testing/afl_runner + name: vuiiscci/multi_atlas - count: 2 - name: registry.gitlab.com/rode0day/fuzzer-testing/qsym_runner + name: vuiiscci/temporal_lobe - count: 2 - name: registry.gitlab.com/rode0day/fuzzer-testing/angora_runner + name: cokelaer/damona - count: 2 - name: khanlab/template-circleci + name: nvcr.io/nvidia/caffe - count: 2 - name: khanlab/mdt-bids + name: valian/docker-python-opencv-ffmpeg - count: 2 - name: khanlab/surfmorph + name: bethgelab/deeplearning - count: 2 - name: jkwmoore/centos7-eb + name: ../../R/r-minimal/r-minimal_3.5.1.simg - count: 2 - name: jkwmoore/centos8-eb + name: ../../R/r/r_3.5.1.simg - count: 2 - name: tgagor/centos + name: ISU-HPC/centos7-base - count: 2 - name: covise.sif + name: mysql - count: 2 - name: kulhanek/target-driven-visual-navigation + name: letaylor/sc_qc_cluster - count: 2 - name: taccaci/jupyter-lab-hpc + name: marcchpc/pytorch_cuda9 - count: 2 - name: ../../sh_container + name: buisciii/centos7_base_image - count: 2 name: vanessa/boneage - count: 2 - name: nvidia/digits -- count: 2 - name: raj76/singularity + name: ../../sh_container - count: 2 - name: ghcr.io/sinzlab/pytorch-singularity + name: quay.io/ohpc/ohpc-gnu9 - count: 2 - name: ../../R/r-minimal/r-minimal_3.5.1.simg + name: ncbi/blast - count: 2 - name: ../../R/r/r_3.5.1.simg + name: covise.sif - count: 2 - name: mysql + name: granek/default/singularity-rstudio-base - count: 2 - name: ISU-HPC/centos7-base + name: deepvariant-docker/deepvariant - count: 2 - name: mbhall88/Singularity_recipes + name: TomHarrop/align-utils - count: 2 - name: opendronemap/odm@sha256 + name: ghcr.io/sinzlab/pytorch-singularity - count: 2 - name: powerPlant/open-mpi-srf + name: ctpelok77/kstar - count: 2 - name: amazon/aws-cli + name: '' - count: 2 - name: ghcr.io/dnanexus-rnd/glnexus + name: intelaipg/intel-optimized-tensorflow - count: 2 - name: urgi/docker_vre_aio + name: justinblaber/multi_pyspin - count: 2 - name: uppmax/offline-uppmax-env + name: twesterhout/default/alpine-openblas - count: 2 - name: APPIAN-PET/APPIAN + name: raj76/singularity - count: 2 - name: UCL-BLIC/singularity_recipes + name: paddlepaddle/deep_speech - count: 2 name: containers.las.iastate.edu/ml-gpu-base - count: 2 - name: intelaipg/intel-optimized-tensorflow -- count: 2 - name: cmssw/cms -- count: 2 - name: vanessa/scif -- count: 2 - name: justinblaber/multi_pyspin + name: intel_netcdf_ubuntu.sif - count: 2 - name: rynlib + name: ecpe4s/ubuntu20.04-oneapi-x86_64 - count: 2 - name: openvino/ubuntu18_runtime + name: UCL-BLIC/singularity_recipes - count: 2 - name: tikk3r/lofar-grid-hpccloud + name: taiji - count: 2 - name: vibpsb/i-adhore + name: trinityctat/fusioninspector - count: 2 - name: tobneu/slamdunk + name: fooliu/macs2 - count: 2 name: griffithlab/pvactools - count: 2 name: quay.io/wtsicgp/ascatngs - count: 2 - name: trinityctat/fusioninspector + name: zhouwanding/transvar - count: 2 - name: taiji + name: sangerpathogens/gubbins - count: 2 name: uhrigs/arriba - count: 2 name: maoj/cicero - count: 2 - name: caffe2ai/caffe2 + name: vfonov/minc-toolkit-containers - count: 2 - name: pennlinc/aslprep + name: buildpack-deps - count: 2 - name: bids/ndmg + name: jcsda/public/jedi-gnu-openmpi-dev - count: 2 - name: bids/mindboggle + name: twongjirad/docker-caffe-larbys-dlee-ssnet - count: 2 - name: cpplab/bidsmreye + name: stevekm/ngs580-nf - count: 2 - name: bids/spm + name: hub.opensciencegrid.org/opensciencegrid/htcondor-file-transfer-ep - count: 2 - name: bids/magetbrain + name: caffe2ai/caffe2 - count: 2 - name: micalab/micapipe + name: nvidia/digits - count: 2 - name: bids/broccoli + name: netreconlab/hipaa-postgres - count: 2 - name: peerherholz/bidsonym + name: nvcr.io/nvidia/modulus/modulus - count: 2 - name: repronim/simple_workflow + name: nvcr.io/nvidia/tao/tao-toolkit-pyt - count: 2 - name: brainiak/rttoolslite + name: nvcr.io/nvidia/tritonserver - count: 2 - name: brainiak/rttoolsxl + name: APPIAN-PET/APPIAN - count: 2 - name: brainiak/rtconda + name: kwells/chroma - count: 2 - name: brainiak/rttools + name: federatedcloud/NixTemplates - count: 2 - name: almalinux + name: bud42/rwml - count: 2 - name: '' + name: barbagroup/landspill - count: 2 - name: quay.io/ohpc/ohpc-gnu9 + name: comses/osg-julia - count: 2 - name: philarevalo/dev/ubuntu-pymol-biopython + name: taccaci/jupyter-lab-hpc - count: 2 - name: richelbilderbeek/default/ormr + name: build/spades_base.sif - count: 2 - name: ncbi/blast + name: stevekm/phoenix-demo - count: 2 - name: hub.opensciencegrid.org/opensciencegrid/htcondor-file-transfer-ep + name: torch.simg - count: 2 - name: caid/adni_lashis_simg + name: centos/centos-7.7.1908-cuda-11.0-openmpi-3.1.6.sif - count: 2 - name: torch.simg + name: centos/centos-7.7.1908-openmpi-3.1.6.sif - count: 2 - name: kaixhin/cuda-theano + name: centos/centos-7.7.1908-openmpi-4.0.5.sif - count: 2 - name: ../singularity-tidyverse/tidyverse_1.3.2-r421.sif + name: r-3.6.1.sif - count: 2 - name: ../singularity-rstudio/rstudio_2022072.576-r421tv132.sif + name: miniconda/miniconda3-py38-4.9.2-ubuntu-18.04.sif - count: 2 - name: barbagroup/landspill + name: anaconda/anaconda3-py38-2020.11-ubuntu-18.04.sif - count: 2 - name: OSKAR-base-dep.sif + name: kaixhin/cuda-theano - count: 2 - name: zhouwanding/transvar + name: bioperl/bioperl - count: 2 - name: andersenlabapps/ivar + name: maplesond/portcullis - count: 2 - name: library/mariadb + name: andersenlabapps/ivar - count: 2 - name: gw000/debian-cuda + name: sriggi/caesar-base - count: 2 - name: nysbc/topaz + name: ufoym/deepo - count: 2 - name: slaclab/fah + name: repronim/simple_workflow - count: 2 - name: bud42/rwml + name: brainiak/rttools - count: 2 - name: anaconda/anaconda3-py38-2020.11-ubuntu-18.04.sif + name: brainiak/rttoolslite - count: 2 - name: r-3.6.1.sif + name: brainiak/rttoolsxl - count: 2 - name: miniconda/miniconda3-py38-4.9.2-ubuntu-18.04.sif + name: brainiak/rtconda - count: 2 - name: centos/centos-7.7.1908-cuda-11.0-openmpi-3.1.6.sif + name: bids/broccoli - count: 2 - name: centos/centos-7.7.1908-openmpi-3.1.6.sif + name: cpplab/bidsmreye - count: 2 - name: centos/centos-7.7.1908-openmpi-4.0.5.sif + name: pennlinc/aslprep - count: 2 - name: centos/python-27-centos7 + name: peerherholz/bidsonym - count: 2 - name: sriggi/caesar-base + name: bids/spm - count: 2 - name: larbys/geant4 + name: bids/mindboggle - count: 2 - name: ibmcom/powerai + name: micalab/micapipe - count: 2 - name: buisciii/centos7_base_image + name: bids/magetbrain - count: 2 - name: granek/default/singularity-rstudio-base + name: alexisespinosa/openfoam - count: 2 - name: vuiiscci/temporal_lobe + name: uppmax/offline-uppmax-env - count: 2 - name: vuiiscci/multi_atlas + name: bids/ndmg - count: 2 - name: vuiiscci/fmriqa + name: registry.gitlab.com/rode0day/fuzzer-testing/symcc_runner - count: 2 - name: marcchpc/pytorch_cuda9 + name: registry.gitlab.com/rode0day/fuzzer-testing/qsym_runner - count: 2 - name: cibiobcg/pacbam + name: registry.gitlab.com/rode0day/fuzzer-testing/afl_runner - count: 2 - name: intelpython/intelpython3_full + name: registry.gitlab.com/rode0day/fuzzer-testing/angora_runner - count: 2 name: jupyter23 - count: 2 name: centos610 - count: 2 - name: bethgelab/deeplearning + name: larbys/geant4 - count: 2 - name: fooliu/macs2 + name: clottaz/fastqpuri - count: 2 - name: sangerpathogens/gubbins + name: multiphenics/multiphenics - count: 2 - name: valian/docker-python-opencv-ffmpeg + name: richelbilderbeek/default/ormr - count: 2 - name: docker.km3net.de/orcasong + name: philarevalo/dev/ubuntu-pymol-biopython - count: 2 - name: pmitev/Teoroo-singularity + name: openvino/ubuntu18_runtime - count: 2 name: ubuntu@sha256 - count: 2 - name: paddlepaddle/deep_speech + name: pmitev/Teoroo-singularity - count: 2 - name: clottaz/fastqpuri + name: caid/adni_lashis_simg - count: 2 - name: deepvariant-docker/deepvariant + name: ghcr.io/truatpasteurdotfr/singularity-docker-centos7-ci - count: 2 - name: bioperl/bioperl + name: powerPlant/open-mpi-srf - count: 2 - name: TomHarrop/align-utils + name: urgi/docker_vre_aio - count: 2 - name: multiphenics/multiphenics + name: opendronemap/odm@sha256 - count: 2 - name: gcr.io/self-fluids/self-base + name: ghcr.io/dnanexus-rnd/glnexus - count: 2 - name: bitnami/minideb + name: amazon/aws-cli - count: 2 - name: twesterhout/default/alpine-openblas + name: benland100/chroma3 - count: 2 - name: stevekm/phoenix-demo + name: bitnami/minideb - count: 2 - name: nvcr.io/nvidia/tlt-streamanalytics + name: ../singularity-tidyverse/tidyverse_1.3.2-r421.sif - count: 2 - name: nvcr.io/nvidia/modulus/modulus + name: ../singularity-rstudio/rstudio_2022072.576-r421tv132.sif - count: 2 - name: nvcr.io/nvidia/tao/tao-toolkit-pyt + name: xsede/centos-nix-base - count: 2 - name: nvcr.io/nvidia/tritonserver + name: library/debian@sha256 - count: 2 - name: spellrun/tensorflow + name: iarcbioinfo/strelka2-nf - count: 2 - name: ruby + name: icbi/quantiseq2 - count: 2 - name: jcsda/public/jedi-gnu-openmpi-dev + name: iarcbioinfo/imputation-nf - count: 2 - name: library/debian@sha256 + name: iarcbioinfo/fastqc-nf - count: 2 - name: xsede/centos-nix-base + name: vibpsb/i-adhore - count: 2 - name: zalfrpm/simplace-hpc + name: nysbc/topaz - count: 2 - name: cokelaer/damona + name: slaclab/fah - count: 2 - name: build/spades_base.sif + name: gw000/debian-cuda - count: 2 - name: docker.km3net.de/orcanet + name: ibmcom/powerai +- count: 2 + name: kulhanek/target-driven-visual-navigation - count: 2 name: nistmni/minc-toolkit-min - count: 2 - name: ufoym/deepo + name: gcr.io/self-fluids/self-base - count: 2 - name: ctpelok77/kstar + name: cibiobcg/pacbam - count: 2 - name: benland100/chroma3 + name: centos/python-27-centos7 - count: 2 - name: stevekm/ngs580-nf + name: vanessa/scif - count: 2 - name: ecpe4s/ubuntu20.04-oneapi-x86_64 + name: ruby - count: 2 - name: intel_netcdf_ubuntu.sif + name: zalfrpm/simplace-hpc - count: 2 - name: netreconlab/hipaa-postgres + name: nvcr.io/nvidia/tlt-streamanalytics - count: 2 - name: federatedcloud/NixTemplates + name: tobneu/slamdunk - count: 2 - name: buildpack-deps + name: tikk3r/lofar-grid-hpccloud - count: 2 - name: vfonov/minc-toolkit-containers + name: rynlib - count: 2 - name: alexisespinosa/openfoam + name: jkwmoore/centos7-eb - count: 2 - name: maplesond/portcullis + name: jkwmoore/centos8-eb - count: 2 - name: iarcbioinfo/strelka2-nf + name: nemo_baseOS.sif - count: 2 - name: icbi/quantiseq2 + name: almalinux - count: 2 - name: kwells/chroma + name: tgagor/centos - count: 2 - name: iarcbioinfo/fastqc-nf + name: spellrun/tensorflow - count: 2 - name: iarcbioinfo/imputation-nf + name: mbhall88/Singularity_recipes - count: 2 - name: comses/osg-julia + name: docker.km3net.de/orcasong - count: 2 - name: nvcr.io/nvidia/caffe + name: docker.km3net.de/orcanet - count: 2 name: halfpipe/halfpipe - count: 2 - name: gberseth/smirl + name: cmssw/cms - count: 2 - name: quay.io/biocontainers/bwa + name: gberseth/smirl - count: 2 - name: quay.io/biocontainers/fastqc + name: mkandes/centos - count: 2 - name: quay.io/biocontainers/star + name: mkandes/ubuntu - count: 2 - name: quay.io/biocontainers/methylpy + name: OSKAR-base-dep.sif - count: 2 name: icaoberg/braker2 - count: 2 - name: quay.io/biocontainers/picard + name: quay.io/biocontainers/bwa +- count: 2 + name: quay.io/biocontainers/star - count: 2 name: quay.io/biocontainers/hisat2 +- count: 2 + name: quay.io/biocontainers/picard - count: 2 name: quay.io/biocontainers/bamtools - count: 2 name: quay.io/biocontainers/phylip - count: 2 - name: nemo_baseOS.sif + name: quay.io/biocontainers/methylpy - count: 2 - name: mkandes/centos + name: quay.io/biocontainers/fastqc - count: 2 - name: mkandes/ubuntu + name: intelpython/intelpython3_full +- count: 2 + name: chambm/wine-dotnet +- count: 2 + name: khanlab/mdt-bids +- count: 2 + name: khanlab/surfmorph +- count: 2 + name: khanlab/template-circleci - count: 1 - name: wangyoucao577/centos7-gcc7.4 + name: GOMAP-Base.sif - count: 1 - name: nvcr.io/hpc/pgi-compilers + name: '{{cookiecutter.base-OS}}' - count: 1 - name: mcin/qeeg + name: frolvlad/alpine-python3 - count: 1 - name: ghcr.io/truatpasteurdotfr/singularity-docker-centos8-ci + name: biocorecrg/c4lwg-2018 - count: 1 - name: ghcr.io/truatpasteurdotfr/singularity-docker-pytorch-a40 + name: biocorecrg/debian-perlbrew - count: 1 - name: ghcr.io/truatpasteurdotfr/singularity-docker-miniconda-quicksom + name: nvcr.io/nvidia/isaac-sim - count: 1 - name: ghcr.io/truatpasteurdotfr/singularity-docker-fidle-gpu + name: nvcr.io/hpc/quantum_espresso - count: 1 - name: ghcr.io/truatpasteurdotfr/singularity-docker-miniconda-py39-cuda11.2-cudnn81-tf-gpu28 + name: nvcr.io/hpc/relion - count: 1 - name: ghcr.io/truatpasteurdotfr/singularity-docker-stream8-warewulf4-builder + name: nvcr.io/hpc/gromacs - count: 1 - name: gnina/gnina + name: continuumio/conda-ci-linux-64-python3.9 - count: 1 - name: ghcr.io/truatpasteurdotfr/miniforge3-bioconda-perl-bioperl + name: R-4.1.3-TensorFlow-2.4.1.sif - count: 1 - name: ghcr.io/truatpasteurdotfr/singularity-docker-busybox + name: R-4.1.3-Torch-1.11.0.sif - count: 1 - name: ghcr.io/truatpasteurdotfr/ambertools-miniconda + name: nvcr.io/hpc/lammps - count: 1 - name: ghcr.io/truatpasteurdotfr/singularity-docker-centos8-warewulf4-builder + name: nvcr.io/hpc/milc - count: 1 - name: ghcr.io/truatpasteurdotfr/singularity-docker-fidle + name: quay.io/biocontainers/braker2 - count: 1 - name: ghcr.io/truatpasteurdotfr/bioconda-perl-bioperl + name: conda/conda_4.9.1.img - count: 1 - name: /master/home/tru/singularity.d/containers/c7-conda-pytorch-10.1-2020-02-04-1920.sif + name: ../library/micromamba/micromamba_1.4.4.img - count: 1 - name: sbidprod.azurecr.io/quinault + name: micromamba_1.4.3.img - count: 1 - name: twongjirad/larbys-pytorch + name: trinityrnaseq/trinotate - count: 1 - name: twongjirad/docker-ubuntu16.04-root + name: sequana_tools_0.14.5.img - count: 1 - name: larbys/sparseconvnet + name: sequana_tools_0.14.3.img - count: 1 - name: larbys/uboonecode + name: sequana_tools_0.14.1.img - count: 1 - name: registry.gitlab.com/rode0day/fuzzer-testing/eclipser_runner + name: sequana_tools_0.14.2.img - count: 1 - name: registry.gitlab.com/fuzzing/directed-fuzzing/llvm-12 + name: trinityrnaseq/transdecoder - count: 1 - name: registry.gitlab.com/rode0day/fuzzer-testing/aflgo_runner + name: vitrivr/adampro - count: 1 - name: registry.gitlab.com/rode0day/fuzzer-testing/i386/afl_runner + name: lbnl-science-it/atlas - count: 1 - name: registry.gitlab.com/rode0day/fuzzer-testing/intriguer_runner + name: slayerchen/eih_staging - count: 1 - name: registry.gitlab.com/rode0day/fuzzer-testing/i386/honggfuzz_runner + name: antismash/standalone - count: 1 - name: registry.gitlab.com/rode0day/fuzzer-testing/i386/aflpp_runner + name: quay.io/biocontainers/metawrap - count: 1 - name: registry.gitlab.com/rode0day/fuzzer-testing/ankou_runner + name: soedinglab/mmseqs2 - count: 1 - name: registry.gitlab.com/rode0day/fuzzer-testing/parmesan_runner + name: pavel-demin/singularity-ubuntu - count: 1 - name: paterno/nova + name: vitchyr/railrl-v15 - count: 1 - name: dingpf/slf6.7 + name: tesseractshadow/tesseract4re - count: 1 - name: lizhen0909/graph_clustering_toolkit + name: spmallick/opencv-docker - count: 1 - name: lizhen0909/pylshvec + name: awokeknowing/cuda-opencv - count: 1 - name: lizhen0909/lshvec + name: underworldcode/underworld2 - count: 1 - name: pawsey/openmpi-base + name: opensuse/leap - count: 1 - name: ryanpepper/finmag + name: cellprofiler/cellprofiler - count: 1 - name: wangyinz/tacc-containers + name: java - count: 1 - name: i686/python + name: mercury/indelible - count: 1 - name: markito3/gluex_docker_prod + name: nunofonseca/irap_fedora - count: 1 - name: markito3/gluex_docker_devel + name: vsa_encoder - count: 1 - name: nvcr.io/nvidia/rapidsai/rapidsai-core + name: r-minimal/r-minimal_3.5.1.simg - count: 1 - name: kaldiasr/kaldi + name: granek/orthomcl - count: 1 - name: centos7.sif + name: rootproject/root - count: 1 - name: covise-deps.sif + name: default/centos - count: 1 - name: lbnl-science-it/atlas + name: jeffquinnmsk/bayestme - count: 1 - name: cfusting/conditional-growth + name: danabl/meshtool - count: 1 - name: kulhanek/deep-rl-pytorch + name: linuxserver/code-server - count: 1 - name: alan0415/singularity_tf_rdma + name: httpd - count: 1 - name: trinityctat/ctatfusion + name: kitware/paraviewweb - count: 1 - name: nvcr.io/nvidia/cuda-arm64 + name: simgs/base.simg - count: 1 - name: taccaci/compress + name: ../simgs/sommet_base.simg - count: 1 - name: taccaci/hello-world + name: vanessa/pefinder - count: 1 - name: taccaci/extract + name: vanessa/robotname - count: 1 - name: taccaci/opensees-sp + name: library/default/centos - count: 1 - name: taccaci/hello-world-license + name: gitlab-registry.cern.ch/sft/docker/centos7 - count: 1 - name: taccaci/opensees-mp + name: ubuntu-vnc-xfce.sif - count: 1 - name: taccaci/interactive-base + name: khanlab/vasst-dev - count: 1 - name: mvdenbog/centos83_barebones + name: alantrrs/py-faster-rcnn - count: 1 - name: BIDS-Apps/dmg + name: ubu1804base.simg - count: 1 - name: rstatstartu/rstanverse + name: mcw-rcc/r-base - count: 1 - name: vanessa/robotname + name: darachm/miniconda3 - count: 1 - name: vanessa/pefinder + name: darachm/singularity_ubuntu - count: 1 - name: ribin7bok/pytorch_geometric + name: itermae_test_base.simg - count: 1 - name: vanessa/rustarok + name: /home/zed/.singularity/ubuntu2004.sif - count: 1 - name: ubuntu16.04 + name: bengen/kalign-v2 - count: 1 - name: exp_pfrl + name: biocontainers/t-coffee - count: 1 - name: joey3639570/tensorflow_mfoed4.0 + name: bdgp/mummer4 - count: 1 - name: joey3639570/tensorflow_without_ofed_cuda9.0 + name: zymoresearch/bcl2fastq - count: 1 - name: joey3639570/tensorflow_with_dali + name: ontresearch/medaka - count: 1 - name: joey3639570/mellanox4.4-tensorflow1.13 + name: darachm/nanopore - count: 1 - name: r-minimal/r-minimal_3.5.1.simg + name: covise-deps.sif - count: 1 - name: granek/orthomcl + name: centos7.sif - count: 1 - name: sarah145/batch_correct + name: haavee/jiveplot - count: 1 - name: gcr.io/kaggle-gpu-images/python + name: joey3639570/tensorflow_with_dali - count: 1 - name: yonoia/mpi_base + name: joey3639570/mellanox4.4-tensorflow1.13 - count: 1 - name: opendronemap/opendronemap + name: joey3639570/tensorflow_without_ofed_cuda9.0 - count: 1 - name: charade/xlibbox@sha256 + name: joey3639570/tensorflow_mfoed4.0 - count: 1 - name: TomHarrop/funannotate-singularity + name: fzimmermann89/idi/idi/latest - count: 1 - name: acpype + name: ryanpepper/finmag - count: 1 - name: pmx + name: Bioconductor/bioconductor_full - count: 1 - name: biobb_md + name: tomharrop/default/genomics - count: 1 - name: pmx_biobb + name: TomHarrop/variant-utils - count: 1 - name: zip + name: TomHarrop/assembly-utils - count: 1 - name: biobb_haddock + name: opensciencegrid/osgvo-tensorflow-gpu - count: 1 - name: biobb_cmip + name: TomHarrop/ont-containers - count: 1 - name: biobb_structure_utils + name: openfoamplus/of_v2012_centos73 - count: 1 - name: unmix/unmix + name: scrin/dev-spconv - count: 1 - name: deeplabcut/deeplabcut + name: mdzik/TCLB_singularity - count: 1 - name: biocontainers/bowtie2 + name: mdzik/default/tclb - count: 1 - name: dceoy/macs2 + name: mcin/qeeg - count: 1 - name: bschiffthaler/samtools + name: dalbohn/openface_ics - count: 1 - name: staphb/samtools + name: jupyter/pyspark-notebook - count: 1 - name: ro47014 + name: uvarc/default/tensorflow - count: 1 - name: docker + name: mono - count: 1 - name: rocker/r-devel + name: frolvlad/alpine-glibc - count: 1 - name: codeaster-seq-15.0.16.sif + name: bgruening/busybox-bash - count: 1 - name: codeastersolver/codeaster-mpi-asterxx + name: alan0415/singularity_tf_rdma - count: 1 - name: codeaster-common-20190513.sif + name: granek/duke-chsi-informatics/singularity-rnaseq - count: 1 - name: codeastersolver/codeaster-mpi + name: /home/shane/singularity/openmpibase.sif - count: 1 - name: ax3l/picongpu + name: jiaqiknight/openfoam-blastfoam - count: 1 - name: /home/vfonov/src/minc-toolkit-containers/singularity/minc-toolkit-base-min.simg + name: jiaqiknight/openfoam-wenoext - count: 1 - name: amd64/centos + name: beapen/fhir - count: 1 - name: /home/shane/singularity/openmpibase.sif + name: morinlab/vcf2maf-vep - count: 1 - name: mcw-rcc/r-base + name: genepattern/docker-gistic - count: 1 - name: davidinouye/destructive-deep-learning + name: morinlab/sclust - count: 1 - name: ../simgs/sommet_base.simg + name: cfusting/conditional-growth - count: 1 - name: simgs/base.simg + name: https - count: 1 - name: prete/cell2location + name: registry - count: 1 - name: tiagopeixoto/graph-tool + name: vcatechnology/linux-mint - count: 1 - name: quay.io/fenicsproject/dev-env + name: docker - count: 1 - name: mdzik/default/tclb + name: amd64/centos - count: 1 - name: mdzik/TCLB_singularity + name: sherlockpipe/sherlockpipe - count: 1 - name: frolvlad/alpine-python3 + name: continuumio/conda-ci-linux-64-python3.8 - count: 1 - name: kishwars/pepper + name: fermilab/fnal-wn-sl7 - count: 1 - name: thomaschln/r-devtools + name: recount-rs3 - count: 1 - name: agilly/burden_testing + name: recount-base - count: 1 - name: bethgelab/jupyter-torch + name: recount-rs4 - count: 1 - name: ghcr.io/junghawoo/simpleg_tool + name: recount-pump - count: 1 - name: geoedf/framework-gdal + name: nvidia/opengl - count: 1 - name: tensorflow/tensorflow. + name: bioconductor_docker - count: 1 - name: intelpython/intelpython2_full + name: pcawg-sanger-cgp-workflow - count: 1 - name: uazhlt/pytorch-example + name: willgpaik/ubuntu_aci - count: 1 name: nbeck/mfannot - count: 1 - name: haavee/jiveplot + name: miccourse/jupyter-mic-2021 - count: 1 - name: lipinskiboris/de-nf + name: theasp/emacs - count: 1 - name: vanessa/sherlock + name: pawsey/openmpi-base - count: 1 - name: rocker/r-base + name: lizhen0909/lshvec - count: 1 - name: biocontainers/blast + name: lizhen0909/pylshvec - count: 1 - name: tigrlab/fmriprep_ciftify + name: lizhen0909/graph_clustering_toolkit - count: 1 - name: jupyter/scipy-notebook + name: codeaster-common-20190513.sif - count: 1 - name: nvidia/opencl + name: codeaster-seq-15.0.16.sif - count: 1 - name: pinellolab/haystack_bio + name: codeastersolver/codeaster-mpi-asterxx - count: 1 - name: Characterisation-Virtual-Laboratory/CharacterisationVL-Software_1804-cuda9 + name: codeastersolver/codeaster-mpi - count: 1 - name: openfoamplus/of_v1712_centos73 + name: pangeo/pangeo-notebook - count: 1 - name: uiuccs484parallelprog/cs484_base + name: rocker/shiny-verse - count: 1 - name: uiuccs484parallelprog/cs484_student + name: tyson-swetnam/turbovnc-singularity - count: 1 - name: cokelaer/damona/sequana + name: cyberbotics/webots - count: 1 - name: Lmod-download.sif + name: quay.io/biocontainers/__SOFTWARE_QUAY__ - count: 1 - name: Lmod-lua.sif + name: ubuntu16.04 - count: 1 - name: Lmod-dev.sif + name: etal/cnvkit - count: 1 - name: Lmod-alpine.sif + name: wanpinglee/sve - count: 1 - name: lto-deps.sif + name: dfam/tetools - count: 1 - name: alpine-edge.sif + name: pinellolab/stream - count: 1 - name: alpine-user.sif + name: godlovedc/ascatngs - count: 1 - name: alpine-bareuser.sif + name: quay.io/wtsicgp/brass - count: 1 - name: alpine-lto.sif + name: bruggerk/ricopili - count: 1 - name: ncbi/edirect + name: msahraeian/neusomatic - count: 1 - name: dezordi/viralflow + name: mnedmonson/public - count: 1 - name: beapen/fhir + name: tejahpc/parliament2 - count: 1 - name: quay.io/wtsicgp/brass + name: quay.io/biocontainers/multiqc - count: 1 - name: godlovedc/ascatngs + name: gaow/seqx - count: 1 - name: library/centos + name: gridss/gridss - count: 1 - name: wanpinglee/sve + name: godlovedc/cgpbattenberg - count: 1 name: pkrusche/hap.py - count: 1 - name: mnedmonson/public + name: library/centos - count: 1 - name: gridss/gridss + name: eagenomics/starseqr - count: 1 - name: tejahpc/parliament2 + name: ikester/blender - count: 1 - name: pinellolab/stream + name: quay.io/encode-dcc/chip-seq-pipeline - count: 1 - name: msahraeian/neusomatic + name: polyactis/accurity - count: 1 - name: dfam/tetools + name: accurity.simg - count: 1 - name: godlovedc/cgpbattenberg + name: wzhou88/saige - count: 1 - name: gaow/seqx + name: maoj/augustus - count: 1 - name: etal/cnvkit + name: suluxan/bamgineer-v2 - count: 1 - name: quay.io/biocontainers/multiqc + name: haoyangz/deepsea-predict-docker - count: 1 - name: bruggerk/ricopili + name: humanlongevity/hla - count: 1 - name: quay.io/biocontainers/whatshap + name: quay.io/comparative-genomics-toolkit/cactus - count: 1 - name: quay.io/biocontainers/uropa + name: godloved/secure/centos7 - count: 1 - name: datalad/datalad + name: silasysh/annogesic +- count: 1 + name: quay.io/biocontainers/whatshap - count: 1 name: sangerpathogens/ariba - count: 1 name: quay.io/biocontainers/longshot - count: 1 - name: mcin/civet -- count: 1 - name: nistmni/minc-toolkit -- count: 1 - name: quay.io/encode-dcc/chip-seq-pipeline -- count: 1 - name: maoj/augustus -- count: 1 - name: silasysh/annogesic + name: quay.io/biocontainers/uropa - count: 1 - name: quay.io/comparative-genomics-toolkit/cactus + name: datalad/datalad - count: 1 - name: polyactis/accurity + name: godloved/secure/ubuntu-xenial - count: 1 - name: accurity.simg + name: nistmni/minc-toolkit - count: 1 - name: humanlongevity/hla + name: mcin/civet - count: 1 - name: haoyangz/deepsea-predict-docker + name: Tensorflow_v1.10_gpu_WORKS.sqsh - count: 1 - name: suluxan/bamgineer-v2 + name: jcsda/docker-clang-mpich-dev - count: 1 - name: wzhou88/saige + name: jcsda/docker-gnu-openmpi-dev - count: 1 - name: godloved/secure/centos7 + name: tabakg/quantum_state_diffusion - count: 1 - name: godloved/secure/ubuntu-xenial + name: geoedf/framework-gdal - count: 1 - name: eagenomics/starseqr + name: ghcr.io/junghawoo/simpleg_tool - count: 1 - name: ikester/blender + name: dalbohn/rstudio_aci - count: 1 - name: Tensorflow_v1.10_gpu_WORKS.sqsh + name: rocker/tensorflow-gpu - count: 1 - name: snystrom/bioconductor_docker_meme + name: exsidius/openpose - count: 1 - name: murphygroup/singularity-matlabmcr2018b + name: larbys/uboonecode - count: 1 - name: pndni/minc-and-ants-container + name: larbys/sparseconvnet - count: 1 - name: rocker/tensorflow-gpu + name: twongjirad/docker-ubuntu16.04-root - count: 1 - name: dalbohn/rstudio_aci + name: twongjirad/larbys-pytorch - count: 1 - name: exsidius/openpose + name: stevekm/containers - count: 1 - name: dota + name: ghcr.io/truatpasteurdotfr/model-angelo - count: 1 - name: scleveland/centos7-base-singularity + name: bstriner/cuda-10.1-cudnn7-devel-ubuntu16.04 - count: 1 - name: poldracklab/ds003-example + name: electronioncollider/jleic - count: 1 - name: bids/brainiak-srm + name: jlabsolid/jlabsolidbase - count: 1 - name: nipreps/nirodents + name: jeffmm/simcore - count: 1 - name: khanlab/funcmasker-flex + name: ibmjava - count: 1 - name: bids/dparsf + name: Characterisation-Virtual-Laboratory/CharacterisationVL-Software_1804-cuda9 - count: 1 - name: bids/fibredensityandcrosssection + name: pinellolab/haystack_bio - count: 1 - name: sebastientourbier/multiscalebrainparcellator + name: madslupe/hddm - count: 1 - name: bids/aa + name: wangyinz/tacc-containers - count: 1 - name: pennlinc/xcp_d + name: outbackCrustacian/python_singularity_recipes - count: 1 - name: bids/nipypelines + name: jtchilders/singularity_mpi_test_recipe - count: 1 - name: bids/oppni + name: thinkplayhack/r_rstudio - count: 1 - name: nipreps/dmriprep + name: thinkplayhack/python_jupyter - count: 1 - name: bids/niak + name: singularity_libs_mpich - count: 1 - name: bids/cpac + name: singularity_nv_libs - count: 1 - name: cpplab/bidspm + name: fuchs - count: 1 - name: bids/antscorticalthickness + name: rocker/r-devel - count: 1 - name: bids/tracula + name: /home/vfonov/src/minc-toolkit-containers/singularity/minc-toolkit-base-min.simg - count: 1 - name: bids/afni_proc + name: biocontainers/blast - count: 1 - name: bids/rs_signal_extract + name: rocker/r-base - count: 1 - name: trends/gift-bids + name: vanessa/sherlock - count: 1 - name: magland/pc-mountainsort5 + name: biocontainers/bowtie2 - count: 1 - name: magland/pc-kilosort3 + name: dceoy/macs2 - count: 1 - name: brainiak/brainiak + name: staphb/samtools - count: 1 - name: brainiak/rtcloudlite + name: bschiffthaler/samtools - count: 1 - name: brainiak/rtcloudxl + name: deeplabcut/deeplabcut - count: 1 - name: brainiak/rtcloudtest + name: yelpmoe/latest - count: 1 - name: brainiak/rtcloud + name: ro47014 - count: 1 - name: '{{cookiecutter.base-OS}}' + name: spark.img - count: 1 - name: registry + name: percona/pmm-server - count: 1 - name: https + name: netreconlab/ca-server - count: 1 - name: pangeo/pangeo-notebook + name: netreconlab/parse-hipaa - count: 1 - name: antismash/standalone + name: netreconlab/hipaa-mongo - count: 1 - name: soedinglab/mmseqs2 + name: clamav/clamav - count: 1 - name: quay.io/biocontainers/metawrap + name: netreconlab/parse-hipaa-dashboard - count: 1 - name: vsa_encoder + name: SavuCore.simg - count: 1 - name: registry.scicore.unibas.ch/schwede/openstructure + name: SavuDeps.simg - count: 1 - name: default/centos + name: nvcr.io/nvidia/riva/riva-speech - count: 1 - name: pavel-demin/singularity-ubuntu + name: nvcr.io/nvidia/tao/tao-toolkit-tf - count: 1 - name: jncc/arcsi-base + name: nvcr.io/nvidia/nemo - count: 1 - name: arcsi-base-mpi + name: jupyter/minimal-notebook - count: 1 - name: libatomsquip/quip-base + name: rstatstartu/rstanverse - count: 1 - name: darachm/singularity_ubuntu + name: opensciencegrid/osgvo-el7 - count: 1 - name: darachm/miniconda3 + name: shengwei/das_tool - count: 1 - name: itermae_test_base.simg + name: fredjaya/rec-bench/base - count: 1 - name: ontresearch/medaka + name: cornellcac/wrf - count: 1 - name: darachm/nanopore + name: cornellcac/presto - count: 1 - name: bdgp/mummer4 + name: cornellcac/pulsar-pipeline - count: 1 - name: zymoresearch/bcl2fastq + name: arcsi-base-mpi - count: 1 - name: biocontainers/t-coffee + name: jncc/arcsi-base - count: 1 - name: /home/zed/.singularity/ubuntu2004.sif + name: airl_lab/default/airl_env - count: 1 - name: bengen/kalign-v2 + name: jupyter/scipy-notebook - count: 1 - name: jupyter/pyspark-notebook + name: tigrlab/fmriprep_ciftify - count: 1 - name: mono + name: asciinema/asciinema - count: 1 - name: frolvlad/alpine-glibc + name: gipert/default/bat - count: 1 - name: uvarc/default/tensorflow + name: gipert/remage-base - count: 1 - name: caid/deepseacat_singularity + name: patroonorg/patroonrs - count: 1 - name: caid/gradient_unwarp_singularity + name: conradbailey/defaults/hpcc - count: 1 - name: caid/mrtrix + name: lmod.Simg - count: 1 - name: caid/freesurfer-6.0 + name: spack.Simg - count: 1 - name: caid/cpac + name: spack-lmod.img - count: 1 - name: caid/spm_fsl_mrtrix + name: spack-singularity.img - count: 1 - name: caid/fsl_robex + name: spack-rhel7.simg - count: 1 - name: caid/ashs + name: TomHarrop/funannotate-singularity - count: 1 - name: caid/ants_fsl_robex + name: kaldiasr/kaldi - count: 1 - name: continuumio/conda-ci-linux-64-python3.8 + name: ghcr.io/plasmafair/epoch - count: 1 - name: lcazenille/multiae + name: cokelaer/damona/sequana - count: 1 - name: bstriner/cuda-10.1-cudnn7-devel-ubuntu16.04 + name: comses/osg-netlogo - count: 1 - name: vitchyr/railrl-v15 + name: taccaci/compress - count: 1 - name: quay.io/biocontainers/r-ngsplot + name: taccaci/opensees-mp - count: 1 - name: quay.io/biocontainers/sicer2 + name: taccaci/hello-world-license - count: 1 - name: danabl/meshtool + name: taccaci/extract - count: 1 - name: impica + name: taccaci/interactive-base - count: 1 - name: OSKAR-2.7.6-base.sif + name: taccaci/hello-world - count: 1 - name: pcawg-sanger-cgp-workflow + name: taccaci/opensees-sp - count: 1 - name: bioconductor_docker + name: tiagopeixoto/graph-tool - count: 1 - name: granek/duke-chsi-informatics/singularity-rnaseq + name: snystrom/bioconductor_docker_meme - count: 1 - name: openfoamplus/of_v2012_centos73 + name: gparadis/singularity-r - count: 1 - name: spack-lmod.img + name: thakk/bioinformatics - count: 1 - name: spack-rhel7.simg + name: davidinouye/destructive-deep-learning - count: 1 - name: spack-singularity.img + name: scleveland/centos7-base-singularity - count: 1 - name: lmod.Simg + name: waldronlab/curatedmetagenomics - count: 1 - name: spack.Simg + name: waldronlab/sratoolkit - count: 1 - name: nipype/nipype + name: waldronlab/bioconductor - count: 1 - name: wav2letter/wav2letter + name: ribin7bok/pytorch_geometric - count: 1 - name: ghcr.io/truatpasteurdotfr/model-angelo + name: bigdatalabteam/hcp-prefreesurfer - count: 1 - name: openfoam/openfoam9-paraview56 + name: vanessa/rustarok - count: 1 - name: quay.io/biocontainers/__SOFTWARE_QUAY__ + name: arch - count: 1 - name: ghcr.io/napari/napari + name: anapsix/alpine-java - count: 1 - name: biocorecrg/debian-perlbrew + name: keceli/mpi_benchmark - count: 1 - name: biocorecrg/c4lwg-2018 + name: danigoland/py36-alpine-llvm6 - count: 1 - name: cyberbotics/webots + name: trinityctat/ctatfusion - count: 1 - name: faustus123/hddeps + name: base.sif - count: 1 - name: opensciencegrid/osgvo-el7 + name: uazhlt/pytorch-example - count: 1 - name: andresquintero/bratwurst_tensorflow2 + name: gcr.io/kaggle-gpu-images/python - count: 1 - name: mtmiller/octave + name: openfoamplus/of_v1712_centos73 - count: 1 - name: slaclab/slac-jupyterlab-gpu + name: wangyoucao577/centos7-gcc7.4 - count: 1 - name: semc/appion-protomo + name: bethgelab/jupyter-torch - count: 1 - name: alpine/git + name: nipype/nipype - count: 1 - name: detlab/cdms-jupyterlab + name: Lmod-dev.sif - count: 1 - name: slaclab/xfce + name: Lmod-download.sif - count: 1 - name: dpokidov/imagemagick + name: Lmod-alpine.sif - count: 1 - name: arch + name: Lmod-lua.sif - count: 1 - name: bigdatalabteam/hcp-prefreesurfer + name: alpine-bareuser.sif - count: 1 - name: singularity_nv_libs + name: alpine-edge.sif - count: 1 - name: singularity_libs_mpich + name: lto-deps.sif - count: 1 - name: bioconductor/release_base2 + name: alpine-user.sif - count: 1 - name: nvidia/container-toolkit + name: alpine-lto.sif - count: 1 - name: nvcr.io/nvidia/hpc-benchmarks + name: yonoia/mpi_base - count: 1 - name: bgruening/busybox-bash + name: poldracklab/ds003-example - count: 1 - name: anapsix/alpine-java + name: brainiak/rtcloudlite - count: 1 - name: ibmjava + name: brainiak/rtcloud - count: 1 - name: slayerchen/eih_staging + name: brainiak/rtcloudxl - count: 1 - name: nitesh1989/biocparallel-example + name: brainiak/rtcloudtest - count: 1 - name: eddelbuettel/r2u + name: brainiak/brainiak - count: 1 - name: nextflow/rnatoy + name: magland/pc-kilosort3 - count: 1 - name: oboratav/speaker-tagging + name: magland/pc-mountainsort5 - count: 1 - name: nvidia/opengl + name: cpplab/bidspm - count: 1 - name: linuxbrew/linuxbrew + name: bids/dparsf - count: 1 - name: adriansevcenco/alienpy.dock + name: bids/aa - count: 1 - name: gcr.io/deepvariant-docker/deepvariant_gpu + name: nipreps/dmriprep - count: 1 - name: gcr.io/deepvariant-docker/deepvariant + name: bids/afni_proc - count: 1 - name: twongjirad/larflow + name: pennlinc/xcp_d - count: 1 - name: rocm/pytorch + name: bids/oppni - count: 1 - name: benchmark.sif + name: bids/niak - count: 1 - name: thurbridi.sif + name: bids/fibredensityandcrosssection - count: 1 - name: base.sif + name: bids/tracula - count: 1 - name: gcc + name: trends/gift-bids - count: 1 - name: yelpmoe/latest + name: bids/brainiak-srm - count: 1 - name: docker.io/library/archlinux + name: nipreps/nirodents - count: 1 - name: gipert/default/bat + name: bids/rs_signal_extract - count: 1 - name: asciinema/asciinema + name: bids/nipypelines - count: 1 - name: gipert/remage-base + name: khanlab/funcmasker-flex - count: 1 - name: amd64/ubuntu + name: sebastientourbier/multiscalebrainparcellator - count: 1 - name: tikhonovapolly/phigaro + name: bids/cpac - count: 1 - name: andreweiner/of_pytorch + name: bids/antscorticalthickness - count: 1 - name: dalbohn/openface_ics + name: linuxbrew/linuxbrew - count: 1 - name: jupyter3.sif + name: funkey/gunpowder - count: 1 - name: ubuntu.sif + name: /nrs/funke/singularity/linajea/pylp_base - count: 1 - name: jcsda/docker_base-gnu-openmpi-dev + name: tensorflow - count: 1 - name: cellprofiler/cellprofiler + name: alexisespinosa/polar - count: 1 - name: opensuse/leap + name: alexisespinosa/pangolin - count: 1 - name: underworldcode/underworld2 + name: lipinskiboris/de-nf - count: 1 - name: java + name: BIDS-Apps/dmg - count: 1 - name: mercury/indelible + name: caid/tgvqsm - count: 1 - name: nunofonseca/irap_fedora + name: caid/tgvqsm_amd - count: 1 - name: awokeknowing/cuda-opencv + name: pchengi/nscjekyll - count: 1 - name: spmallick/opencv-docker + name: registry.gitlab.com/rode0day/fuzzer-testing/i386/honggfuzz_runner - count: 1 - name: tesseractshadow/tesseract4re + name: registry.gitlab.com/rode0day/fuzzer-testing/aflgo_runner - count: 1 - name: GOMAP-Base.sif + name: registry.gitlab.com/rode0day/fuzzer-testing/i386/afl_runner - count: 1 - name: miccourse/jupyter-mic-2021 + name: registry.gitlab.com/rode0day/fuzzer-testing/ankou_runner - count: 1 - name: tyson-swetnam/turbovnc-singularity + name: registry.gitlab.com/rode0day/fuzzer-testing/parmesan_runner - count: 1 - name: docker.pkg.github.com/adamwilsonlab/docker_geospatial_plus/docker_geospatial_plus + name: registry.gitlab.com/fuzzing/directed-fuzzing/llvm-12 - count: 1 - name: adamwilsonlab/emma + name: registry.gitlab.com/rode0day/fuzzer-testing/intriguer_runner - count: 1 - name: mariadb + name: registry.gitlab.com/rode0day/fuzzer-testing/eclipser_runner - count: 1 - name: thinca/vim + name: registry.gitlab.com/rode0day/fuzzer-testing/i386/aflpp_runner - count: 1 - name: nvidia/vulkan + name: jupyter3.sif - count: 1 - name: /home/Thomas.Robinson/containers/intel/am4/spack_netcdf_intel.sif + name: jcsda/docker_base-gnu-openmpi-dev - count: 1 - name: ubu1804base.simg + name: ubuntu.sif - count: 1 - name: barksim/bark-ml + name: lpmn/lalsuite - count: 1 - name: jiaqiknight/openfoam-wenoext + name: twongjirad/larflow - count: 1 - name: jiaqiknight/openfoam-blastfoam + name: ncbi/edirect - count: 1 - name: recount-base + name: dezordi/viralflow - count: 1 - name: recount-rs4 + name: darsh3/openfoam_hisa_pytorch - count: 1 - name: recount-rs3 + name: paterno/nova - count: 1 - name: recount-pump + name: dingpf/slf6.7 - count: 1 name: bdgenomics/rhapsody - count: 1 - name: danigoland/py36-alpine-llvm6 + name: nvidia/opencl - count: 1 name: danabl/nifti-to-seg - count: 1 - name: alantrrs/py-faster-rcnn -- count: 1 - name: keceli/mpi_benchmark + name: openfoam/openfoam7-paraview56 - count: 1 - name: scrin/dev-spconv + name: impica - count: 1 - name: ubuntu-vnc-xfce.sif + name: nextflow/rnatoy - count: 1 - name: kkelchte/ros_gazebo_tensorflow + name: nvcr.io/nvidia/cuda-arm64 - count: 1 - name: khanlab/vasst-dev + name: tensorflow/tensorflow. - count: 1 - name: rbartelme/anvio-pangenomics + name: mtmiller/octave - count: 1 - name: TomHarrop/variant-utils + name: qtimlab/deepneuro_segment_gbm - count: 1 - name: opensciencegrid/osgvo-tensorflow-gpu + name: arm32v7/ubuntu - count: 1 - name: TomHarrop/ont-containers + name: thinca/vim - count: 1 - name: tomharrop/default/genomics + name: mariadb - count: 1 - name: Bioconductor/bioconductor_full + name: nvidia/vulkan - count: 1 - name: TomHarrop/assembly-utils + name: ghcr.io/napari/napari - count: 1 - name: tabakg/quantum_state_diffusion + name: unmix/unmix - count: 1 - name: fredjaya/rec-bench/base + name: sarah145/batch_correct - count: 1 - name: scr.svc.stanford.edu/deisseroth-lab/bruker-rip + name: caid/fsl_robex - count: 1 - name: jeffquinnmsk/bayestme + name: caid/freesurfer-6.0 - count: 1 - name: fzimmermann89/idi/idi/latest + name: caid/ashs - count: 1 - name: crown421/default/juliabase + name: caid/mrtrix - count: 1 - name: base/archlinux + name: caid/spm_fsl_mrtrix - count: 1 - name: airl_lab/default/airl_env + name: caid/cpac - count: 1 - name: darsh3/openfoam_hisa_pytorch + name: caid/ants_fsl_robex - count: 1 - name: ucr-singularity/ml-software + name: caid/deepseacat_singularity - count: 1 - name: ucrdocker/cuda-10.1-base + name: caid/gradient_unwarp_singularity - count: 1 - name: library/default/centos + name: base/archlinux - count: 1 - name: gitlab-registry.cern.ch/sft/docker/centos7 + name: ubuntu-focal - count: 1 - name: ISUGIFsingularity/GATK + name: tswetnam/cloudcompare - count: 1 - name: khanlab/neuroglia-core-minc + name: pdal/pdal - count: 1 - name: nvcr.io/nvidia/riva/riva-speech + name: rbartelme/anvio-pangenomics - count: 1 - name: nvcr.io/nvidia/tao/tao-toolkit-tf + name: willprice/opencv2-cuda8 - count: 1 - name: nvcr.io/nvidia/nemo + name: willprice/gpu-flow - count: 1 - name: ml4ai/automates + name: willprice/nvidia-ffmpeg - count: 1 - name: spellrun/dynet + name: '{{ cookiecutter.dockerhub_username }}/{{ cookiecutter.image_name }}' - count: 1 - name: spellrun/caffe2 + name: /home/Thomas.Robinson/containers/intel/am4/spack_netcdf_intel.sif - count: 1 - name: nightseas/cuda-torch + name: penngwyn/jupytercasa - count: 1 - name: nvcr.io/hpc/lammps + name: pwiz-i-agree-to-the-vendor-licenses - count: 1 - name: continuumio/conda-ci-linux-64-python3.9 + name: ghcr.io/truatpasteurdotfr/ambertools-miniconda - count: 1 - name: R-4.1.3-TensorFlow-2.4.1.sif + name: /master/home/tru/singularity.d/containers/c7-conda-pytorch-10.1-2020-02-04-1920.sif - count: 1 - name: R-4.1.3-Torch-1.11.0.sif + name: ghcr.io/truatpasteurdotfr/singularity-docker-centos8-warewulf4-builder - count: 1 - name: nvcr.io/nvidia/isaac-sim + name: ghcr.io/truatpasteurdotfr/bioconda-perl-bioperl - count: 1 - name: nvcr.io/hpc/quantum_espresso + name: ghcr.io/truatpasteurdotfr/singularity-docker-busybox - count: 1 - name: nvcr.io/hpc/relion + name: ghcr.io/truatpasteurdotfr/singularity-docker-miniconda-py39-cuda11.2-cudnn81-tf-gpu28 - count: 1 - name: nvcr.io/hpc/gromacs + name: ghcr.io/truatpasteurdotfr/miniforge3-bioconda-perl-bioperl - count: 1 - name: nvcr.io/hpc/milc + name: ghcr.io/truatpasteurdotfr/singularity-docker-fidle - count: 1 - name: biobakery/biobakery + name: ghcr.io/truatpasteurdotfr/singularity-docker-stream8-warewulf4-builder - count: 1 - name: godlovedc/lolcow + name: gnina/gnina - count: 1 - name: ubuntu-20.04-R-3.6.3-CRAN-packages.simg + name: ghcr.io/truatpasteurdotfr/singularity-docker-centos8-ci - count: 1 - name: ubuntu-20.04-R-3.6.3-2.simg + name: ghcr.io/truatpasteurdotfr/singularity-docker-pytorch-a40 - count: 1 - name: ubuntu-20.04-R-3.6.3.simg + name: ghcr.io/truatpasteurdotfr/singularity-docker-miniconda-quicksom - count: 1 - name: ubuntu-20.04-R-3.6.3-CRAN-Bioconductor-packages.simg + name: sbidprod.azurecr.io/quinault - count: 1 - name: ubuntu-20.04-R-install-base.simg + name: ghcr.io/truatpasteurdotfr/singularity-docker-fidle-gpu - count: 1 - name: jcsda/docker-clang-mpich-dev + name: intelpython/intelpython2_full - count: 1 - name: jcsda/docker-gnu-openmpi-dev + name: charade/xlibbox@sha256 - count: 1 - name: docker-openstudio + name: opendronemap/opendronemap - count: 1 - name: theasp/emacs + name: ISUGIFsingularity/GATK - count: 1 - name: ghcr.io/plasmafair/epoch + name: andreweiner/of_pytorch - count: 1 - name: rocker/shiny-verse + name: crown421/default/juliabase - count: 1 - name: nckucch/ubuntubase + name: andresquintero/bratwurst_tensorflow2 - count: 1 - name: nckucch/tensorflowbase + name: quay.io/biocontainers/r-ngsplot - count: 1 - name: psadil/stahb + name: quay.io/biocontainers/sicer2 - count: 1 - name: funkey/gunpowder + name: thurbridi.sif - count: 1 - name: /nrs/funke/singularity/linajea/pylp_base + name: benchmark.sif - count: 1 name: xsede/nix-sc-benchmark -- count: 1 - name: xsede/centos-nix-openmpi - count: 1 name: xsede/nix-namd2-14-cuda10.2 +- count: 1 + name: jec/namd3-nocuda - count: 1 name: jec/mandle - count: 1 - name: jec/namd3-nocuda + name: xsede/centos-nix-openmpi - count: 1 - name: ubuntu-focal + name: iarcbioinfo/ngscheckmate-nf - count: 1 - name: tswetnam/cloudcompare + name: delhommet/test_ith - count: 1 - name: pdal/pdal + name: iarcbioinfo/svaba-nf - count: 1 - name: jeffmm/simcore + name: iarcbioinfo/needlestack - count: 1 - name: waldronlab/curatedmetagenomics + name: iarcbioinfo/vcf_normalization-nf - count: 1 - name: waldronlab/sratoolkit + name: semc/appion-protomo - count: 1 - name: waldronlab/bioconductor + name: slaclab/xfce - count: 1 - name: shengwei/das_tool + name: slaclab/slac-jupyterlab-gpu - count: 1 - name: tensorflow + name: detlab/cdms-jupyterlab - count: 1 - name: conda/conda_4.9.1.img + name: dpokidov/imagemagick - count: 1 - name: trinityrnaseq/transdecoder + name: alpine/git - count: 1 - name: sequana_tools_0.14.2.img + name: rocm/pytorch - count: 1 - name: sequana_tools_0.14.3.img + name: khanlab/neuroglia-core-minc - count: 1 - name: sequana_tools_0.14.5.img + name: kulhanek/deep-rl-pytorch - count: 1 - name: sequana_tools_0.14.1.img + name: godlovedc/lolcow - count: 1 - name: micromamba_1.4.3.img + name: tin6150/r4eta - count: 1 - name: ../library/micromamba/micromamba_1.4.4.img + name: faustus123/hddeps - count: 1 - name: trinityrnaseq/trinotate + name: docker-openstudio - count: 1 - name: gparadis/singularity-r + name: gcc - count: 1 - name: pchengi/nscjekyll + name: registry.scicore.unibas.ch/schwede/openstructure - count: 1 - name: conradbailey/defaults/hpcc + name: openfoam/openfoam5-paraview54 - count: 1 - name: fuchs + name: amd64/ubuntu - count: 1 - name: quay.io/biocontainers/braker2 + name: prete/cell2location - count: 1 - name: morinlab/vcf2maf-vep + name: lcazenille/multiae - count: 1 - name: morinlab/sclust + name: murphygroup/singularity-matlabmcr2018b - count: 1 - name: genepattern/docker-gistic + name: spack/centos7 - count: 1 - name: weatherhub/metview + name: exp_pfrl - count: 1 - name: shahzebmsiddiqui/easybuild-centos7/java + name: ubuntu-20.04-R-3.6.3-2.simg - count: 1 - name: kitware/paraviewweb + name: ubuntu-20.04-R-3.6.3-CRAN-Bioconductor-packages.simg - count: 1 - name: linuxserver/code-server + name: ubuntu-20.04-R-install-base.simg - count: 1 - name: httpd + name: ubuntu-20.04-R-3.6.3.simg - count: 1 - name: stevekm/containers + name: ubuntu-20.04-R-3.6.3-CRAN-packages.simg - count: 1 - name: repositories.sif + name: adriansevcenco/alienpy.dock - count: 1 - name: ubuntu-20.04-python-3.10-cuda-11.7.sif + name: ax3l/picongpu - count: 1 - name: qtimlab/deepneuro_segment_gbm + name: kkelchte/ros_gazebo_tensorflow - count: 1 - name: percona/pmm-server + name: tikhonovapolly/phigaro - count: 1 - name: netreconlab/hipaa-mongo + name: agilly/burden_testing - count: 1 - name: netreconlab/parse-hipaa-dashboard + name: thomaschln/r-devtools - count: 1 - name: clamav/clamav + name: uiuccs484parallelprog/cs484_student - count: 1 - name: netreconlab/parse-hipaa + name: uiuccs484parallelprog/cs484_base - count: 1 - name: netreconlab/ca-server + name: docker.pkg.github.com/adamwilsonlab/docker_geospatial_plus/docker_geospatial_plus - count: 1 - name: cornellcac/wrf + name: adamwilsonlab/emma - count: 1 - name: cornellcac/presto + name: nvcr.io/hpc/pgi-compilers - count: 1 - name: cornellcac/pulsar-pipeline + name: kishwars/pepper - count: 1 - name: tin6150/r4eta + name: i686/python - count: 1 - name: willgpaik/ubuntu_aci + name: pndni/minc-and-ants-container - count: 1 - name: vcatechnology/linux-mint + name: accre.internal.base.simg - count: 1 - name: sherlockpipe/sherlockpipe + name: quay.io/fenicsproject/dev-env - count: 1 - name: willprice/opencv2-cuda8 + name: oboratav/speaker-tagging - count: 1 - name: willprice/gpu-flow + name: djkapner/default/emaligner-petsc - count: 1 - name: '{{ cookiecutter.dockerhub_username }}/{{ cookiecutter.image_name }}' + name: nckucch/tensorflowbase - count: 1 - name: willprice/nvidia-ffmpeg + name: nckucch/ubuntubase - count: 1 - name: openfoam/openfoam7-paraview56 + name: mustxyk/fsl - count: 1 - name: jamierajewski/rat-container + name: biobakery/biobakery - count: 1 - name: SavuDeps.simg + name: docker.io/library/archlinux - count: 1 - name: SavuCore.simg + name: pmx - count: 1 - name: rocker/ropensci + name: biobb_cmip - count: 1 - name: accre.internal.base.simg + name: biobb_haddock - count: 1 - name: madslupe/hddm + name: zip - count: 1 - name: rootproject/root + name: biobb_structure_utils - count: 1 - name: alexisespinosa/pangolin + name: pmx_biobb - count: 1 - name: alexisespinosa/polar + name: acpype - count: 1 - name: openfoam/openfoam5-paraview54 + name: biobb_md - count: 1 - name: spark.img + name: libatomsquip/quip-base - count: 1 - name: lpmn/lalsuite + name: barksim/bark-ml - count: 1 - name: iarcbioinfo/needlestack + name: weatherhub/metview - count: 1 - name: iarcbioinfo/svaba-nf + name: jamierajewski/rat-container - count: 1 - name: iarcbioinfo/ngscheckmate-nf + name: markito3/gluex_docker_devel - count: 1 - name: delhommet/test_ith + name: markito3/gluex_docker_prod - count: 1 - name: iarcbioinfo/vcf_normalization-nf + name: ml4ai/automates - count: 1 - name: jtchilders/singularity_mpi_test_recipe + name: spellrun/dynet - count: 1 - name: outbackCrustacian/python_singularity_recipes + name: nightseas/cuda-torch - count: 1 - name: fermilab/fnal-wn-sl7 + name: spellrun/caffe2 - count: 1 - name: electronioncollider/jleic + name: openfoam/openfoam9-paraview56 - count: 1 - name: jlabsolid/jlabsolidbase + name: scr.svc.stanford.edu/deisseroth-lab/bruker-rip - count: 1 - name: ubuntu_pw_1 + name: nvcr.io/nvidia/hpc-benchmarks - count: 1 - name: sng425 + name: nvidia/container-toolkit - count: 1 - name: ubuntu_base.simg + name: shahzebmsiddiqui/easybuild-centos7/java - count: 1 - name: comses/osg-netlogo + name: nvcr.io/nvidia/rapidsai/rapidsai-core - count: 1 - name: vitrivr/adampro + name: statgen/docker-saige - count: 1 - name: jupyter/minimal-notebook + name: statgen/epacts - count: 1 - name: arm32v7/ubuntu + name: repositories.sif - count: 1 - name: patroonorg/patroonrs + name: ubuntu-20.04-python-3.10-cuda-11.7.sif - count: 1 - name: spack/centos7 + name: psadil/stahb - count: 1 - name: djkapner/default/emaligner-petsc + name: dota - count: 1 name: hkmo/fragpipe - count: 1 - name: caid/tgvqsm + name: wav2letter/wav2letter - count: 1 - name: caid/tgvqsm_amd + name: OSKAR-2.7.6-base.sif - count: 1 - name: pwiz-i-agree-to-the-vendor-licenses + name: quay.io/biocontainers/augustus - count: 1 - name: quay.io/biocontainers/infernal + name: meren/anvio - count: 1 - name: quay.io/biocontainers/kraken2 + name: quay.io/biocontainers/bedops - count: 1 name: quay.io/biocontainers/raxml - count: 1 - name: quay.io/biocontainers/bedops -- count: 1 - name: quay.io/biocontainers/prodigal + name: quay.io/biocontainers/infernal - count: 1 name: quay.io/biocontainers/homer +- count: 1 + name: quay.io/biocontainers/prodigal - count: 1 name: quay.io/biocontainers/bismark +- count: 1 + name: quay.io/biocontainers/bcftools - count: 1 name: staphb/prokka - count: 1 - name: genomicpariscentre/guppy + name: quay.io/biocontainers/cutadapt - count: 1 - name: quay.io/biocontainers/fastx_toolkit + name: quay.io/biocontainers/star-fusion +- count: 1 + name: quay.io/biocontainers/sra-tools +- count: 1 + name: quay.io/biocontainers/kraken2 - count: 1 name: icaoberg/fdupes - count: 1 - name: quay.io/biocontainers/viennarna + name: genomicpariscentre/guppy - count: 1 name: quay.io/biocontainers/blat - count: 1 - name: quay.io/biocontainers/bcftools + name: quay.io/biocontainers/blast - count: 1 - name: pandoc/latex + name: quay.io/biocontainers/viennarna - count: 1 - name: quay.io/biocontainers/cutadapt + name: spack/ubuntu-bionic - count: 1 name: quay.io/biocontainers/flash - count: 1 - name: spack/ubuntu-bionic + name: quay.io/biocontainers/fastx_toolkit - count: 1 - name: quay.io/biocontainers/sra-tools + name: pandoc/latex - count: 1 - name: quay.io/biocontainers/augustus + name: bioconductor/release_base2 - count: 1 - name: quay.io/biocontainers/star-fusion + name: rocker/ropensci - count: 1 - name: quay.io/biocontainers/blast + name: mvdenbog/centos83_barebones - count: 1 - name: meren/anvio + name: eddelbuettel/r2u - count: 1 - name: statgen/docker-saige + name: ubuntu_base.simg - count: 1 - name: statgen/epacts + name: ubuntu_pw_1 - count: 1 - name: thakk/bioinformatics + name: sng425 - count: 1 - name: mustxyk/fsl + name: ucrdocker/cuda-10.1-base - count: 1 - name: penngwyn/jupytercasa + name: ucr-singularity/ml-software - count: 1 - name: thinkplayhack/python_jupyter + name: gcr.io/deepvariant-docker/deepvariant_gpu - count: 1 - name: thinkplayhack/r_rstudio + name: gcr.io/deepvariant-docker/deepvariant +- count: 1 + name: nitesh1989/biocparallel-example bootstraps: -- count: 6275 +- count: 6272 name: docker - count: 472 name: shub @@ -2004,10 +2004,10 @@ bootstraps: name: 'library ' - count: 5 name: docker-archive -- count: 1 - name: library' - count: 1 name: tensorflow +- count: 1 + name: library' orgs: - count: 38 name: quay.io/biocontainers @@ -2019,14 +2019,14 @@ orgs: name: ghcr.io/truatpasteurdotfr - count: 14 name: registry.gitlab.com/rode0day -- count: 13 - name: khanlab - count: 13 name: rocker -- count: 12 - name: vitchyr +- count: 13 + name: khanlab - count: 12 name: caid +- count: 12 + name: vitchyr - count: 10 name: iarcbioinfo - count: 9 @@ -2041,204 +2041,206 @@ orgs: name: continuumio - count: 7 name: nvidia -- count: 6 - name: nipreps -- count: 6 - name: slaclab - count: 6 name: TomHarrop +- count: 6 + name: nipreps - count: 6 name: library -- count: 5 - name: twongjirad +- count: 6 + name: slaclab - count: 5 name: netreconlab +- count: 5 + name: twongjirad - count: 5 name: jupyter +- count: 4 + name: darachm - count: 4 name: joey3639570 - count: 4 - name: godloved + name: willgpaik - count: 4 - name: darachm + name: granek +- count: 4 + name: godloved - count: 4 name: biocontainers - count: 4 - name: centos + name: jcsda - count: 4 name: larbys - count: 4 - name: granek -- count: 4 - name: gcr.io -- count: 4 - name: jcsda + name: willprice - count: 4 name: xsede - count: 4 - name: ufscar + name: poldracklab - count: 4 - name: willgpaik + name: centos - count: 4 - name: willprice + name: conda - count: 4 - name: poldracklab + name: ufscar - count: 4 name: bioconductor - count: 4 - name: conda + name: gcr.io +- count: 3 + name: vuiiscci - count: 3 name: lizhen0909 - count: 3 name: quay.io/wtsicgp - count: 3 - name: sebastientourbier + name: bstriner - count: 3 - name: richelbilderbeek + name: cornellcac - count: 3 - name: bstriner + name: gipert - count: 3 - name: magland + name: cokelaer - count: 3 - name: biocorecrg + name: stevekm - count: 3 - name: gipert + name: waldronlab - count: 3 - name: vuiiscci + name: bud42 - count: 3 - name: danabl + name: magland - count: 3 - name: spellrun + name: sebastientourbier - count: 3 - name: godlovedc + name: alexisespinosa +- count: 3 + name: danabl +- count: 3 + name: richelbilderbeek - count: 3 - name: waldronlab + name: biocorecrg - count: 3 - name: cokelaer + name: godlovedc - count: 3 name: trinityrnaseq -- count: 3 - name: bud42 - count: 3 name: ctpelok77 - count: 3 - name: stevekm -- count: 3 - name: cornellcac -- count: 3 - name: alexisespinosa + name: spellrun - count: 3 name: openfoam -- count: 3 - name: icaoberg - count: 3 name: mkandes +- count: 3 + name: icaoberg - count: 2 - name: jkwmoore + name: ISU-HPC - count: 2 - name: markito3 + name: mdzik - count: 2 - name: kulhanek + name: uvarc - count: 2 - name: DeepLearnPhysics + name: frolvlad - count: 2 - name: ISU-HPC + name: bensonyang88 - count: 2 - name: opendronemap + name: jiaqiknight +- count: 2 + name: morinlab - count: 2 name: codeastersolver - count: 2 - name: mdzik + name: maoj - count: 2 - name: uiuccs484parallelprog + name: sangerpathogens - count: 2 - name: trinityctat + name: mcin +- count: 2 + name: pawsey +- count: 2 + name: dalbohn - count: 2 name: pinellolab - count: 2 - name: mcin + name: jtchilders - count: 2 - name: maoj + name: thinkplayhack - count: 2 - name: pndni + name: opensciencegrid - count: 2 - name: pennlinc + name: barbagroup - count: 2 - name: cpplab + name: comses - count: 2 - name: pennbbl + name: trinityctat - count: 2 - name: repronim + name: openfoamplus - count: 2 - name: ncbi + name: bethgelab - count: 2 - name: frolvlad + name: repronim - count: 2 - name: uvarc + name: cpplab - count: 2 - name: barbagroup + name: pennlinc - count: 2 - name: openfoamplus + name: pennbbl - count: 2 - name: alexpacheco + name: ncbi - count: 2 - name: pawsey + name: dcgc-bfx - count: 2 - name: modakopt + name: DeepLearnPhysics - count: 2 - name: amd64 + name: opendronemap - count: 2 - name: dalbohn + name: jec - count: 2 - name: intelpython + name: kulhanek - count: 2 - name: bethgelab + name: nistmni - count: 2 - name: sangerpathogens + name: amd64 - count: 2 - name: jiaqiknight + name: pcpaquette - count: 2 - name: dcgc-bfx + name: uiuccs484parallelprog - count: 2 - name: quay.io/fenicsproject + name: pndni - count: 2 - name: opensciencegrid + name: quay.io/fenicsproject - count: 2 - name: bensonyang88 + name: nckucch - count: 2 - name: ml4ai + name: provarepro - count: 2 name: Characterisation-Virtual-Laboratory - count: 2 - name: nckucch -- count: 2 - name: jec + name: jkwmoore - count: 2 - name: docker.km3net.de + name: markito3 - count: 2 - name: nistmni + name: ml4ai - count: 2 name: nickjer - count: 2 - name: morinlab + name: docker.km3net.de - count: 2 name: shahzebmsiddiqui - count: 2 name: intel - count: 2 - name: provarepro -- count: 2 - name: pcpaquette -- count: 2 - name: jtchilders -- count: 2 - name: comses + name: statgen - count: 2 - name: broadinstitute + name: i386 - count: 2 name: anair17 - count: 2 name: tensorflow +- count: 2 + name: modakopt +- count: 2 + name: alexpacheco - count: 2 name: staphb - count: 2 @@ -2246,669 +2248,667 @@ orgs: - count: 2 name: spack - count: 2 - name: statgen -- count: 2 - name: i386 + name: intelpython - count: 2 - name: thinkplayhack -- count: 1 - name: chambm -- count: 1 - name: wangyoucao577 -- count: 1 - name: gnina -- count: 1 - name: sbidprod.azurecr.io -- count: 1 - name: registry.gitlab.com/fuzzing -- count: 1 - name: paterno -- count: 1 - name: dingpf + name: broadinstitute - count: 1 - name: cpllab + name: ebothmann - count: 1 - name: ryanpepper + name: vitrivr - count: 1 - name: wangyinz + name: lbnl-science-it - count: 1 - name: i686 + name: elisadonnard - count: 1 name: fempar - count: 1 - name: jeffersonlab + name: slayerchen - count: 1 - name: tgagor + name: antismash - count: 1 - name: kaldiasr + name: soedinglab - count: 1 - name: lbnl-science-it + name: pavel-demin - count: 1 - name: einar90 + name: tesseractshadow - count: 1 - name: glotzerlab + name: valian - count: 1 - name: cfusting + name: spmallick - count: 1 - name: alan0415 + name: awokeknowing - count: 1 - name: sternacht + name: underworldcode - count: 1 - name: team113sanger + name: opensuse - count: 1 - name: mvdenbog + name: cellprofiler - count: 1 - name: singularity-hub.org + name: mercury - count: 1 - name: BIDS-Apps + name: nunofonseca - count: 1 - name: rstatstartu + name: r-minimal - count: 1 - name: ribin7bok + name: r - count: 1 - name: raj76 + name: rstudio - count: 1 - name: ghcr.io/sinzlab + name: rootproject - count: 1 - name: r-minimal + name: default - count: 1 - name: r + name: jeffquinnmsk - count: 1 - name: deeplearnphysics + name: letaylor - count: 1 - name: sarah145 + name: marcchpc - count: 1 - name: mbhall88 + name: linuxserver - count: 1 - name: yonoia + name: kitware - count: 1 - name: qiime2 + name: buisciii - count: 1 - name: quay.io/qiime2 + name: simgs - count: 1 - name: powerPlant + name: quay.io/ohpc - count: 1 - name: amazon + name: gitlab-registry.cern.ch - count: 1 - name: ghcr.io/dnanexus-rnd + name: alantrrs - count: 1 - name: urgi + name: mcw-rcc - count: 1 - name: charade + name: bengen - count: 1 - name: uppmax + name: bdgp - count: 1 - name: APPIAN-PET + name: zymoresearch - count: 1 - name: unmix + name: ontresearch - count: 1 - name: UCL-BLIC + name: haavee - count: 1 - name: deeplabcut + name: fzimmermann89 - count: 1 - name: dceoy + name: ryanpepper - count: 1 - name: bschiffthaler + name: Bioconductor - count: 1 - name: containers.las.iastate.edu + name: tomharrop - count: 1 - name: intelaipg + name: deepvariant-docker - count: 1 - name: dtcenter + name: scrin - count: 1 - name: ax3l + name: bgruening - count: 1 - name: cmssw + name: alan0415 - count: 1 - name: mcw-rcc + name: sternacht - count: 1 - name: davidinouye + name: ghcr.io/sinzlab - count: 1 - name: simgs + name: jekriske - count: 1 - name: prete + name: NuWro - count: 1 - name: aylab + name: beapen - count: 1 - name: tiagopeixoto + name: genepattern - count: 1 - name: kishwars + name: cfusting - count: 1 - name: thomaschln + name: vcatechnology - count: 1 - name: agilly + name: intelaipg - count: 1 - name: ghcr.io/junghawoo + name: sherlockpipe - count: 1 - name: geoedf + name: justinblaber - count: 1 - name: uazhlt + name: fermilab +- count: 1 + name: twesterhout - count: 1 name: nbeck - count: 1 - name: justinblaber + name: miccourse +- count: 1 + name: theasp - count: 1 - name: haavee + name: pangeo - count: 1 - name: lipinskiboris + name: raj76 - count: 1 - name: tigrlab + name: paddlepaddle - count: 1 - name: openvino + name: containers.las.iastate.edu - count: 1 - name: tikk3r + name: tyson-swetnam - count: 1 - name: vibpsb + name: images - count: 1 - name: dezordi + name: ecpe4s - count: 1 - name: beapen + name: cyberbotics - count: 1 - name: tobneu + name: UCL-BLIC - count: 1 - name: griffithlab + name: etal - count: 1 name: wanpinglee - count: 1 - name: pkrusche + name: fooliu - count: 1 - name: mnedmonson + name: dfam - count: 1 - name: gridss + name: griffithlab - count: 1 - name: tejahpc + name: zhouwanding +- count: 1 + name: bruggerk - count: 1 name: msahraeian - count: 1 - name: dfam + name: mnedmonson +- count: 1 + name: tejahpc - count: 1 name: gaow - count: 1 - name: etal + name: gridss - count: 1 - name: ewels + name: pkrusche - count: 1 - name: bruggerk + name: eagenomics - count: 1 - name: datalad + name: ikester - count: 1 name: quay.io/encode-dcc - count: 1 - name: silasysh + name: polyactis - count: 1 - name: uhrigs + name: wzhou88 - count: 1 - name: quay.io/comparative-genomics-toolkit + name: suluxan - count: 1 - name: polyactis + name: haoyangz - count: 1 name: humanlongevity - count: 1 - name: haoyangz + name: uhrigs - count: 1 - name: suluxan + name: quay.io/comparative-genomics-toolkit - count: 1 - name: wzhou88 + name: silasysh - count: 1 - name: eagenomics + name: datalad - count: 1 - name: ikester + name: vfonov - count: 1 - name: caffe2ai + name: tabakg - count: 1 - name: snystrom + name: geoedf - count: 1 - name: murphygroup + name: ghcr.io/junghawoo - count: 1 name: exsidius - count: 1 - name: scleveland + name: kaitj - count: 1 - name: micalab + name: electronioncollider - count: 1 - name: peerherholz + name: jlabsolid - count: 1 - name: trends + name: jeffmm - count: 1 - name: neuronets + name: madslupe - count: 1 - name: pangeo + name: wangyinz - count: 1 - name: antismash + name: hub.opensciencegrid.org - count: 1 - name: metabat + name: outbackCrustacian - count: 1 - name: soedinglab + name: caffe2ai - count: 1 - name: quay.io/ohpc + name: arezaii - count: 1 - name: registry.scicore.unibas.ch + name: dceoy - count: 1 - name: default + name: bschiffthaler - count: 1 - name: jekriske + name: deeplabcut - count: 1 - name: pavel-demin + name: yelpmoe - count: 1 - name: philarevalo + name: percona - count: 1 - name: jncc + name: clamav - count: 1 - name: libatomsquip + name: glotzerlab - count: 1 - name: ontresearch + name: rstatstartu - count: 1 - name: bdgp + name: APPIAN-PET - count: 1 - name: zymoresearch + name: shengwei - count: 1 - name: bengen + name: kwells - count: 1 - name: mesnardo + name: fredjaya - count: 1 - name: quay.io/vgteam + name: federatedcloud - count: 1 - name: hub.opensciencegrid.org + name: jncc - count: 1 - name: lcazenille + name: airl_lab - count: 1 - name: kaixhin + name: tigrlab - count: 1 - name: yh549848 + name: asciinema - count: 1 - name: rockylinux + name: shreyaskamathkm - count: 1 - name: nipype + name: patroonorg - count: 1 - name: zhouwanding + name: conradbailey - count: 1 - name: wav2letter + name: pranithavangala - count: 1 - name: ghcr.io/napari + name: mesnardo - count: 1 - name: andersenlabapps + name: kaldiasr - count: 1 - name: cyberbotics + name: ghcr.io/plasmafair - count: 1 - name: faustus123 + name: openfluid - count: 1 - name: gw000 + name: tiagopeixoto - count: 1 - name: andresquintero + name: snystrom - count: 1 - name: mtmiller + name: gparadis - count: 1 - name: semc + name: build - count: 1 - name: alpine + name: thakk - count: 1 - name: detlab + name: davidinouye - count: 1 - name: nysbc + name: scleveland - count: 1 - name: dpokidov + name: ribin7bok +- count: 1 + name: fcpindi - count: 1 name: bigdatalabteam - count: 1 - name: arezaii + name: miniconda - count: 1 - name: bgruening + name: anaconda - count: 1 - name: anapsix + name: ghcr.io/mkandes - count: 1 - name: slayerchen + name: kaixhin - count: 1 - name: nitesh1989 + name: anapsix - count: 1 - name: eddelbuettel + name: bioperl - count: 1 - name: kiwiroy + name: keceli - count: 1 - name: nextflow + name: danigoland - count: 1 - name: anaconda + name: mafreitas - count: 1 - name: miniconda + name: team113sanger - count: 1 - name: oboratav + name: maplesond - count: 1 - name: oliviermattelaer + name: uazhlt - count: 1 - name: linuxbrew + name: andersenlabapps - count: 1 - name: adriansevcenco + name: wangyoucao577 - count: 1 - name: ubuntu_base + name: nipype - count: 1 name: sriggi - count: 1 - name: arcsUVA + name: yonoia - count: 1 - name: rocm + name: ufoym - count: 1 - name: ibmcom + name: trends - count: 1 - name: matmu + name: peerherholz - count: 1 - name: yelpmoe + name: micalab - count: 1 - name: buisciii + name: neuronets - count: 1 - name: docker.io + name: nipy - count: 1 - name: asciinema + name: linuxbrew - count: 1 - name: tikhonovapolly + name: funkey - count: 1 - name: andreweiner + name: ensemblorg - count: 1 - name: marcchpc + name: lipinskiboris - count: 1 - name: cibiobcg + name: uppmax - count: 1 - name: cellprofiler + name: arcsUVA - count: 1 - name: opensuse + name: BIDS-Apps - count: 1 - name: underworldcode + name: pchengi - count: 1 - name: fooliu + name: registry.gitlab.com/fuzzing - count: 1 - name: mercury + name: brentp - count: 1 - name: nunofonseca + name: lpmn - count: 1 - name: awokeknowing + name: dezordi - count: 1 - name: spmallick + name: clottaz - count: 1 - name: tesseractshadow + name: darsh3 - count: 1 - name: valian + name: paterno - count: 1 - name: mafreitas + name: dingpf - count: 1 - name: miccourse + name: bdgenomics - count: 1 - name: NuWro + name: jtduda - count: 1 - name: fcpindi + name: multiphenics - count: 1 - name: tyson-swetnam + name: einar90 - count: 1 - name: images + name: nextflow +- count: 1 + name: philarevalo +- count: 1 + name: matmu +- count: 1 + name: mattocci +- count: 1 + name: hariszaf +- count: 1 + name: kiwiroy +- count: 1 + name: openresty +- count: 1 + name: mtmiller - count: 1 - name: finalduty + name: openvino - count: 1 - name: docker.pkg.github.com + name: qtimlab - count: 1 - name: adamwilsonlab + name: arm32v7 - count: 1 name: thinca - count: 1 name: pmitev - count: 1 - name: paddlepaddle -- count: 1 - name: barksim -- count: 1 - name: clottaz -- count: 1 - name: bdgenomics + name: deeplearnphysics - count: 1 - name: danigoland + name: ghcr.io/napari - count: 1 - name: alantrrs + name: unmix - count: 1 - name: keceli + name: sarah145 - count: 1 - name: scrin + name: base - count: 1 - name: drneavin + name: tswetnam - count: 1 - name: kkelchte + name: pdal - count: 1 name: rbartelme - count: 1 - name: hariszaf + name: '{{ cookiecutter.dockerhub_username }}' - count: 1 - name: google + name: penngwyn - count: 1 - name: tomharrop + name: gnina - count: 1 - name: Bioconductor + name: sbidprod.azurecr.io - count: 1 - name: deepvariant-docker + name: powerPlant - count: 1 - name: bioperl + name: ewels - count: 1 - name: dynverse + name: quay.io/qiime2 - count: 1 - name: computationalradiationphysics + name: qiime2 - count: 1 - name: tabakg + name: urgi - count: 1 - name: nipy + name: metabat - count: 1 - name: multiphenics + name: charade - count: 1 - name: kaitj + name: quay.io/vgteam - count: 1 - name: anibali + name: ghcr.io/dnanexus-rnd - count: 1 - name: fredjaya + name: amazon - count: 1 - name: scr.svc.stanford.edu + name: ISUGIFsingularity - count: 1 - name: jeffquinnmsk + name: ResearchIT - count: 1 - name: fzimmermann89 + name: benland100 - count: 1 - name: bitnami + name: andreweiner - count: 1 name: crown421 - count: 1 - name: base -- count: 1 - name: twesterhout -- count: 1 - name: airl_lab + name: bitnami - count: 1 - name: darsh3 + name: andresquintero - count: 1 - name: letaylor + name: yh549848 - count: 1 - name: ucr-singularity + name: adigenova - count: 1 - name: bvlc + name: icbi - count: 1 - name: ucrdocker + name: delhommet - count: 1 - name: gitlab-registry.cern.ch + name: vibpsb - count: 1 - name: ISUGIFsingularity + name: nysbc - count: 1 - name: ResearchIT + name: semc - count: 1 - name: bilbydev + name: detlab - count: 1 - name: rapidsai + name: dpokidov - count: 1 - name: nightseas + name: alpine - count: 1 - name: rstudio + name: dtcenter - count: 1 - name: biobakery + name: gw000 - count: 1 - name: theasp + name: ibmcom - count: 1 - name: ghcr.io/plasmafair + name: rocm - count: 1 - name: mattocci + name: anibali - count: 1 - name: psadil + name: dynverse - count: 1 - name: funkey + name: tin6150 - count: 1 - name: tswetnam + name: aylab - count: 1 - name: pdal + name: archlinux - count: 1 - name: jeffmm + name: faustus123 - count: 1 - name: shengwei + name: registry.scicore.unibas.ch - count: 1 - name: zalfrpm + name: cibiobcg - count: 1 - name: mambaorg + name: trlandet - count: 1 - name: gparadis + name: prete - count: 1 - name: build + name: lcazenille - count: 1 - name: pchengi + name: murphygroup - count: 1 - name: conradbailey + name: nitishnarula - count: 1 - name: ebothmann + name: adriansevcenco - count: 1 - name: openfluid + name: ax3l - count: 1 - name: ensemblorg + name: kkelchte - count: 1 - name: openresty + name: zalfrpm - count: 1 - name: ufoym + name: tikhonovapolly - count: 1 - name: osrf + name: tpall - count: 1 - name: genepattern + name: cpllab - count: 1 - name: weatherhub + name: agilly - count: 1 - name: benland100 + name: thomaschln - count: 1 - name: kitware + name: docker.pkg.github.com - count: 1 - name: linuxserver + name: adamwilsonlab - count: 1 - name: pranithavangala + name: singularity-hub.org - count: 1 - name: elisadonnard + name: rapidsai - count: 1 - name: ecpe4s + name: google - count: 1 - name: thomasrobinson + name: tobneu - count: 1 - name: qtimlab + name: kishwars - count: 1 - name: percona + name: i686 - count: 1 - name: clamav + name: oboratav - count: 1 - name: ghcr.io/mkandes + name: tikk3r - count: 1 - name: federatedcloud + name: drneavin - count: 1 - name: tin6150 + name: djkapner - count: 1 - name: vfonov + name: mustxyk - count: 1 - name: vcatechnology + name: biobakery - count: 1 - name: nitishnarula + name: docker.io - count: 1 - name: sherlockpipe + name: libatomsquip - count: 1 - name: '{{ cookiecutter.dockerhub_username }}' + name: barksim - count: 1 - name: scientificlinux + name: weatherhub - count: 1 name: jamierajewski - count: 1 - name: singularityhub -- count: 1 - name: shreyaskamathkm + name: scientificlinux - count: 1 - name: madslupe + name: rockylinux - count: 1 - name: rootproject + name: tgagor - count: 1 - name: brentp + name: jeffersonlab - count: 1 - name: maplesond + name: nightseas - count: 1 - name: trlandet + name: mambaorg - count: 1 - name: lpmn + name: computationalradiationphysics - count: 1 - name: sachet + name: mbhall88 - count: 1 - name: delhommet + name: scr.svc.stanford.edu - count: 1 - name: icbi + name: halfpipe - count: 1 - name: kwells + name: finalduty - count: 1 - name: outbackCrustacian + name: thomasrobinson - count: 1 - name: adigenova + name: osrf - count: 1 - name: fermilab + name: cmssw - count: 1 name: pytorch - count: 1 name: aibasel - count: 1 - name: electronioncollider + name: oliviermattelaer - count: 1 - name: jlabsolid + name: gberseth - count: 1 - name: vitrivr + name: psadil - count: 1 - name: tpall + name: hkmo - count: 1 - name: arm32v7 + name: ubuntu_base - count: 1 - name: patroonorg + name: sachet - count: 1 - name: halfpipe + name: condaforge - count: 1 - name: djkapner + name: wav2letter - count: 1 - name: hkmo + name: GodloveD - count: 1 name: nfcore - count: 1 - name: gberseth -- count: 1 - name: GodloveD -- count: 1 - name: nextgenusfs + name: bilbydev - count: 1 - name: combinelab + name: meren - count: 1 name: gnuoctave - count: 1 name: ezlabgva +- count: 1 + name: combinelab +- count: 1 + name: nextgenusfs - count: 1 name: pandoc - count: 1 - name: meren + name: chambm - count: 1 - name: condaforge + name: singularityhub - count: 1 - name: thakk + name: mvdenbog - count: 1 - name: archlinux + name: eddelbuettel - count: 1 - name: mustxyk + name: ucrdocker - count: 1 - name: penngwyn + name: ucr-singularity - count: 1 - name: jtduda + name: bvlc +- count: 1 + name: nitesh1989 tags: - latest: 686 + latest: 683 other: 5824 versions: /nrs/funke/singularity/linajea/pylp_base: @@ -4107,7 +4107,7 @@ versions: larbys/uboonecode: v08_00_00_40: 1 letaylor/sc_qc_cluster: - latest: 5 + latest: 2 libatomsquip/quip-base: latest: 1 library/centos: diff --git a/_data/repos.yml b/_data/repos.yml index fc644220..43787b01 100644 --- a/_data/repos.yml +++ b/_data/repos.yml @@ -4468,26 +4468,26 @@ Asap7772/rail-rl-franka-eval: description: null filenames: - docker/Singularity - - docker/railrl_v11_cuda10-1_mj2-0-2-2_torch0-3-1_gym0-10-5_py3-5-2/Singularity - - docker/railrl_v7_cuda8/Singularity - - docker/railrl_v7/Singularity - - docker/railrl_gpu_mujoco1-5-v4/singularity/Singularity - - docker/railrl_v12_cuda10-1_mj2-0-2-2_torch1-1-0_gym0-12-5_py3-6-5/Singularity + - docker/railrl_v5/singularity/Singularity - docker/railrl_v12_cuda10-1_mj2-0-2-2_torch1-1-0_gym0-12-5_py3-6-5/Singularity_cpu + - docker/railrl_v12_cuda10-1_mj2-0-2-2_torch1-1-0_gym0-12-5_py3-6-5/Singularity + - docker/railrl_v6_cuda8/Singularity + - docker/railrl_v10_cuda10-1_mj2-0-2-2_torch0-4-1_gym0-10-5_py3-5-2/Singularity + - docker/railrl_v6_cuda9/Singularity + - docker/railrl_v7/Singularity - docker/railrl_v9_cuda10-1_mj1-50-1-59_torch0-4-1_gym0-10-5_py3-5-2/Singularity - - docker/railrl_v9-5_cuda10-1_mj1-50-1-59_torch1-1-0_gym0-10-5_py3-5-2/Singularity + - docker/railrl_v11_cuda10-1_mj2-0-2-2_torch0-3-1_gym0-10-5_py3-5-2/Singularity - docker/railrl_v8_cuda10-1/Singularity - - docker/railrl_v5/singularity/Singularity - - docker/railrl_v10_cuda10-1_mj2-0-2-2_torch0-4-1_gym0-10-5_py3-5-2/Singularity - - docker/railrl_ray_gym-0-12-0/Singularity_from_scratch_cuda8 - - docker/railrl_ray_gym-0-12-0/Singularity_from_scratch - - docker/railrl_hand_v2/Singularity - - docker/railrl_hand_v2/Singularity_cpu - docker/railrl_ray/Singularity - - docker/railrl_hand_v1/Singularity + - docker/railrl_hand_v2/Singularity_cpu + - docker/railrl_hand_v2/Singularity + - docker/railrl_v7_cuda8/Singularity + - docker/railrl_gpu_mujoco1-5-v4/singularity/Singularity + - docker/railrl_ray_gym-0-12-0/Singularity_from_scratch + - docker/railrl_ray_gym-0-12-0/Singularity_from_scratch_cuda8 + - docker/railrl_v9-5_cuda10-1_mj1-50-1-59_torch1-1-0_gym0-10-5_py3-5-2/Singularity - docker/railrl_hand_v1/Singularity_cpu - - docker/railrl_v6_cuda8/Singularity - - docker/railrl_v6_cuda9/Singularity + - docker/railrl_hand_v1/Singularity - experiments/ashvin/icml2020/singularity/Singularity full_name: Asap7772/rail-rl-franka-eval latest_release: null @@ -9535,10 +9535,10 @@ Bioconductor/bioconductor_full: description: DEPRECATED - Docker Images which include a complete installation of all software needed to build all Bioconductor packages filenames: - - Singularity + - Singularity.RELEASE_3_9 - Singularity.RELEASE_3_8 - Singularity.RELEASE_3_10 - - Singularity.RELEASE_3_9 + - Singularity full_name: Bioconductor/bioconductor_full latest_release: null readme: "
wget https://swift.rc.nectar.org.au/v1/AUTH_810/CVL-Singularity-External-Files/virtualgl_2.6.2_amd64.deb\n\
\ndpkg -i virtualgl_2.6.2_amd64.deb\n
\n"
stargazers_count: 8
- subscribers_count: 5
+ subscribers_count: 4
topics: []
updated_at: 1696247668.0
ChunCun/container:
@@ -14292,8 +14292,8 @@ Crown421/Singularity.jl:
data_format: 2
description: null
filenames:
- - basebuilds/Singularity.jupyterbase
- basebuilds/Singularity.juliabase
+ - basebuilds/Singularity.jupyterbase
full_name: Crown421/Singularity.jl
latest_release: null
readme: "This BIDS App enables generation and subsequent group analysis of structural\ - \ connectomes\ngenerated from diffusion MRI data. The analysis pipeline relies\ - \ primarily on the MRtrix3\nsoftware package, and includes a number of\ - \ state-of-the-art methods for image processing,\ntractography reconstruction,\ - \ connectome generation and inter-subject connection density\nnormalisation.
\n\ -NOTE: App is still under development; script is not guaranteed\ - \ to be operational\nfor all use cases.
\nDue to use of the Anatomically-Constrained\
- \ Tractography (ACT) framework, correction of\nEPI susceptibility distortions\
- \ is a prerequisite for this pipeline. Currently, this is\nonly possible within\
- \ this pipeline through use of the FSL tool topup
, which relies\n\
- on the presence of spin-echo EPI images with differences in phase encoding to\
- \ estimate\nthe causative inhomogeneity field. In the absence of such data, this\
- \ pipeline is not\ncurrently applicable; though recommendations for alternative\
- \ mechanisms for such\ncorrection in the Issues page are welcome, and development\
- \ of novel techniques for\nperforming this correction are additionally underway.
While many common DICOM conversion software are capable of providing data characterising\n\
- the phase and slice encoding performed in the acquisition protocol, which are\
- \ subsequently\nused by this pipeline to automate DWI data pre-processing, for\
- \ some softwares and/or\nsome data (particularly those not acquired on a Siemens\
- \ platform), such data may not be\npresent in the sidecar JSON files for files\
- \ in the BIDS dwi/
and fmap/
directories.\nIn this circumstance,\
- \ it will be necessary for users to manually enter the relevant\ninformation into\
- \ these files in order for this script to be capable of processing the\ndata.\
- \ Every JSON file in these two directories should contain the BIDS fields\nPhaseEncodingDirection
\
+ readme: "
This BIDS App enables generation\ + \ and subsequent group analysis of structural connectomes\ngenerated from diffusion\ + \ MRI data. The analysis pipeline relies primarily on the MRtrix3\nsoftware\ + \ package, and includes a number of state-of-the-art methods for image processing,\n\ + tractography reconstruction, connectome generation and inter-subject connection\ + \ density\nnormalisation.
\nNOTE: App is still under development;\ + \ script is not guaranteed to be operational\nfor all use cases.
\nDue to use of the Anatomically-Constrained Tractography\
+ \ (ACT) framework, correction of\nEPI susceptibility distortions is a prerequisite\
+ \ for this pipeline. Currently, this is\nonly possible within this pipeline through\
+ \ use of the FSL tool topup
, which relies\non the presence of spin-echo\
+ \ EPI images with differences in phase encoding to estimate\nthe causative inhomogeneity\
+ \ field. In the absence of such data, this pipeline is not\ncurrently applicable;\
+ \ though recommendations for alternative mechanisms for such\ncorrection in the\
+ \ Issues page are welcome, and development of novel techniques for\nperforming\
+ \ this correction are additionally underway.
While many common DICOM conversion\
+ \ software are capable of providing data characterising\nthe phase and slice encoding\
+ \ performed in the acquisition protocol, which are subsequently\nused by this\
+ \ pipeline to automate DWI data pre-processing, for some softwares and/or\nsome\
+ \ data (particularly those not acquired on a Siemens platform), such data may\
+ \ not be\npresent in the sidecar JSON files for files in the BIDS dwi/
\
+ \ and fmap/
directories.\nIn this circumstance, it will be necessary\
+ \ for users to manually enter the relevant\ninformation into these files in order\
+ \ for this script to be capable of processing the\ndata. Every JSON file in these\
+ \ two directories should contain the BIDS fields\nPhaseEncodingDirection
\
\ and TotalReadoutTime
. For DWI data, it is also preferable to\n\
provide the SliceEncodingDirection
and SliceTiming
fields.\
\ More information on these\ndata can be found in the BIDS documentation.
The tool consists of three explicit analysis levels:
\n\"\
preproc
\": This performs basic DWI (and if necessary T1-weighted\
\ image) pre-processing\nbased on the raw BIDS data input, writing the resulting\
@@ -76166,11 +76168,11 @@ bids-apps/MRtrix3_connectome:
\ performing\nappropriate inter-subject connection density normalisation as described\
\ in\nthis manuscript.\
\ Results are written to sub-directory\n\"MRtrix3_connectome-group
\"\
- \ within the specified output directory.
This\ - \ script can be utilised in one of three ways:
\nAs a stand-alone\ - \ MRtrix3 script
\nThe script mrtrix3_connectome.py
\
+ \ within the specified output directory.
This script can be utilised in one of three ways:
\nAs a stand-alone MRtrix3 script
\nThe script mrtrix3_connectome.py
\
\ can additionally be used outside of this Docker\ncontainer, as a stand-alone\
\ Python script build against the MRtrix3 Python libraries.\nUsing the\
\ script in this way requires setting the PYTHONPATH
environment\
@@ -76203,50 +76205,52 @@ bids-apps/MRtrix3_connectome:
\n
The resulting container file \"MRtrix3_connectome.sif
\"\
\ can be run as a stand-alone\nexecutable, as long as the system on which the\
\ file is executed has a version of\nSingularity installed that is compatible\
- \ with that of the system used to build the\ncontainer.
The help page of the tool itself can be generated by executing the script without\n\ - providing any command-line options. The help page is additionally presented at\ - \ the\nbottom of this README page for reference. Documentation regarding the underlying\n\ - MRtrix3 tools can be found in the official\nMRtrix3 documentation. Additional information\n\ - may be found in the online\ - \ MRtrix3 community forum.
\nExperiencing problems?\
- \ You can either post a private message to me on the\nMRtrix3 community forum, or you can report it\n\
- directly to the \n\n\n The help page of the tool itself can be generated\
+ \ by executing the script without\nproviding any command-line options. The help\
+ \ page is additionally presented at the\nbottom of this README page for reference.\
+ \ Documentation regarding the underlying\nMRtrix3 tools can be found\
+ \ in the official\nMRtrix3 documentation. Additional information\nmay be found in the\
+ \ online MRtrix3\
+ \ community forum. Experiencing problems? You can either post a private message to me on the\n\
+ MRtrix3\
+ \ community forum, or you can report it\ndirectly to the GitHub issues list.\nIn both cases, please include as much information as\
\ possible; this may include re-running\nthe script using the Development of this\
- \ tool was made possible through funding from the National Health\nand Medical\
- \ Research Council (NHMRC) of Australia. The developer acknowledges the\
- \ facilities and scientific and technical assistance of\nthe National Imaging\
- \ Facility, a National Collaborative Research Infrastructure Strategy\n(NCRIS)\
- \ capability, at the Florey Institute of Neuroscience and Mental Health. The Florey Institute of Neuroscience and Mental Health acknowledges support\
- \ from the\nVictorian Government and in particular the funding from the Operational\
- \ Infrastructure\nSupport Grant. Robert Smith is supported by fellowship\
- \ funding from the National Imaging Facility (NIF),\nan Australian Government\
- \ National Collaborative Research Infrastructure Strategy (NCRIS)\ncapability. When using this pipeline, please use the following snippet to acknowledge the\
- \ relevant\nwork (amend as appropriate depending on options used): Structural\
- \ connectomes were generated using the MRtrix3_connectome BIDS App (Smith\n\
- et al., 2019), which operates principally using tools provided in the MRtrix3\n\
- software package (Tournier et al., 2019; http://mrtrix.org). This included: DWI\ndenoising (Veraart et al.,\
- \ 2016), Gibbs ringing removal (Kellner et al., 2016),\npre-processing (Andersson\
- \ et al., 2003; Andersson and Sotiropoulos, 2016; Andersson\net al., 2016; (IF\
- \ USING EDDY_CUDA: Andersson et al., 2017)); and bias field correction\n(Tustison\
- \ et al., 2010 OR Zhang et al., 2001); inter-modal registration (Bhushan et al.,\n\
+ \ which can be forwarded to the developer. Development of this tool was made possible through funding from the National\
+ \ Health\nand Medical Research Council (NHMRC) of Australia. The developer\
+ \ acknowledges the facilities and scientific and technical assistance of\nthe\
+ \ National Imaging Facility, a National Collaborative Research Infrastructure\
+ \ Strategy\n(NCRIS) capability, at the Florey Institute of Neuroscience and Mental\
+ \ Health. The Florey Institute of Neuroscience and Mental Health acknowledges\
+ \ support from the\nVictorian Government and in particular the funding from the\
+ \ Operational Infrastructure\nSupport Grant. Robert Smith is supported\
+ \ by fellowship funding from the National Imaging Facility (NIF),\nan Australian\
+ \ Government National Collaborative Research Infrastructure Strategy (NCRIS)\n\
+ capability. When using this pipeline,\
+ \ please use the following snippet to acknowledge the relevant\nwork (amend as\
+ \ appropriate depending on options used): Structural connectomes were\
+ \ generated using the MRtrix3_connectome BIDS App (Smith\net al., 2019),\
+ \ which operates principally using tools provided in the MRtrix3\nsoftware\
+ \ package (Tournier et al., 2019; http://mrtrix.org). This included: DWI\ndenoising (Veraart et al., 2016),\
+ \ Gibbs ringing removal (Kellner et al., 2016),\npre-processing (Andersson et\
+ \ al., 2003; Andersson and Sotiropoulos, 2016; Andersson\net al., 2016; (IF USING\
+ \ EDDY_CUDA: Andersson et al., 2017)); and bias field correction\n(Tustison et\
+ \ al., 2010 OR Zhang et al., 2001); inter-modal registration (Bhushan et al.,\n\
2015); brain extraction (Smith, 2002 OR Iglesias et al., 2011), T1 tissue segmentation\n\
(Zhang et al., 2001; Smith, 2002; Patenaude et al., 2011; Smith et al., 2012);\
\ spherical\ndeconvolution (Tournier et al., 2004; Jeurissen et al., 2014); probabilistic\
@@ -76356,73 +76360,75 @@ bids-apps/MRtrix3_connectome:
\ 2010, 50, 970-983\nZhang, Y.; Brady, M. & Smith, S. Segmentation of brain\
\ MR images through a hidden Markov random field model and the expectation-maximization\
\ algorithm. IEEE Transactions on Medical Imaging, 2001, 20, 45-57\n\n\
- The following help page can equivalently be generated by executing the tool\
- \ without\nproviding any command-line arguments (within a container environment;\
- \ note interface\nis slightly different if run natively). Generate\
- \ structural connectomes based on diffusion-weighted and T1-weighted image data\
- \ using state-of-the-art reconstruction tools, particularly those provided in\
- \ MRtrix3 The following help page can equivalently be generated\
+ \ by executing the tool without\nproviding any command-line arguments (within\
+ \ a container environment; note interface\nis slightly different if run natively). Generate structural connectomes\
+ \ based on diffusion-weighted and T1-weighted image data using state-of-the-art\
+ \ reconstruction tools, particularly those provided in MRtrix3 bids_dir: The directory\
\ with the input dataset formatted according to the BIDS standard. output_dir: The directory where the output files should be stored. analysis_level: Level of analysis that will be performed;\
- \ options are: preproc, participant, group. While preproc-level\
- \ analysis only requires data within the BIDS directory, participant-level analysis\
- \ requires that the output directory be pre-populated with the results from preproc-level\
- \ processing; similarly, group-level analysis requires that the output directory\
- \ be pre-populated with the results from participant-level analysis. The\
- \ operations performed by each of the three levels of analysis are as follows: \"preproc\": DWI: Denoising; Gibbs ringing removal; motion, eddy current and\
- \ EPI distortion correction and outlier detection & replacement; brain masking,\
- \ bias field correction and intensity normalisation; rigid-body registration &\
- \ transformation to T1-weighted image. T1-weighted image: bias field correction;\
- \ brain masking. \"participant\": DWI: Response function estimation; FOD\
- \ estimation. T1-weighted image (if -parcellation is not none): Tissue segmentation;\
- \ grey matter parcellation. Combined (if -parcellation is not none, or -streamlines\
- \ is provided): Whole-brain streamlines tractography; SIFT2; connectome construction. \"group\": Generation of FA-based population template; warping of template-based\
- \ white matter mask to subject spaces; calculation of group mean white matter\
- \ response function; scaling of connectomes based on white matter b=0 intensity,\
- \ response function used during participant-level analysis, and SIFT model proportioinality\
- \ coefficient; generation of group mean connectome. The label(s) provided\
- \ to the -participant_label and -session_label options correspond(s) to sub-<participant_label>\
- \ and ses-<session_label> from the BIDS spec (so they do not include\
- \ \"sub-\" or \"ses-\"). Multiple participants / sessions can be specified with\
- \ a space-separated list. For both preproc-level and participant-level\
- \ analyses, if no specific participants or sessions are nominated by the user\
- \ (or the user explicitly specifies multiple participants / sessions), the script\
- \ will process each of these in series. It is additionally possible for the user\
- \ to invoke multiple instances of this script in order to process multiple subjects\
- \ at once in parallel, ensuring that no single participant / session is being\
- \ processed in parallel, and that preproc-level output data are written fully\
- \ before commencing participant-level analysis. The -output_verbosity\
- \ option principally affects the participant-level analysis, modulating how many\
- \ derivative files are written to the output directory. Permitted values are from\
- \ 1 to 4: 1 writes only those files requisite for group-level analysis; 2 additionally\
- \ writes files typically useful for post-hoc analysis (the default); 3 additionally\
- \ generates files for enhanced connectome visualisation and copies the entire\
- \ whole-brain tractogram; 4 additionally generates a full copy of the script scratch\
- \ directory (with all intermediate files retained) to the output directory (and\
- \ this applies to all analysis levels) If running participant-level analysis\
- \ using the script as a standalone tool rather than inside the provided container,\
- \ data pertaining to atlas parcellations can no longer be guaranteed to be stored\
- \ at a specific location on the filesystem. In this case, the user will most likely\
- \ need to manually specify the location where the corresponding parcellation is\
- \ stored using the -atlas_path option. --parcellation While preproc-level analysis only requires data within the BIDS directory,\
+ \ participant-level analysis requires that the output directory be pre-populated\
+ \ with the results from preproc-level processing; similarly, group-level analysis\
+ \ requires that the output directory be pre-populated with the results from participant-level\
+ \ analysis. The operations performed by each of the three levels of analysis\
+ \ are as follows: \"preproc\": DWI: Denoising; Gibbs ringing removal;\
+ \ motion, eddy current and EPI distortion correction and outlier detection &\
+ \ replacement; brain masking, bias field correction and intensity normalisation;\
+ \ rigid-body registration & transformation to T1-weighted image. T1-weighted\
+ \ image: bias field correction; brain masking. \"participant\": DWI: Response\
+ \ function estimation; FOD estimation. T1-weighted image (if -parcellation is\
+ \ not none): Tissue segmentation; grey matter parcellation. Combined (if -parcellation\
+ \ is not none, or -streamlines is provided): Whole-brain streamlines tractography;\
+ \ SIFT2; connectome construction. \"group\": Generation of FA-based population\
+ \ template; warping of template-based white matter mask to subject spaces; calculation\
+ \ of group mean white matter response function; scaling of connectomes based on\
+ \ white matter b=0 intensity, response function used during participant-level\
+ \ analysis, and SIFT model proportioinality coefficient; generation of group mean\
+ \ connectome. The label(s) provided to the -participant_label and -session_label\
+ \ options correspond(s) to sub-<participant_label> and ses-<session_label>\
+ \ from the BIDS spec (so they do not include \"sub-\" or \"ses-\"). Multiple\
+ \ participants / sessions can be specified with a space-separated list. For both preproc-level and participant-level analyses, if no specific participants\
+ \ or sessions are nominated by the user (or the user explicitly specifies multiple\
+ \ participants / sessions), the script will process each of these in series. It\
+ \ is additionally possible for the user to invoke multiple instances of this script\
+ \ in order to process multiple subjects at once in parallel, ensuring that no\
+ \ single participant / session is being processed in parallel, and that preproc-level\
+ \ output data are written fully before commencing participant-level analysis. The -output_verbosity option principally affects the participant-level analysis,\
+ \ modulating how many derivative files are written to the output directory. Permitted\
+ \ values are from 1 to 4: 1 writes only those files requisite for group-level\
+ \ analysis; 2 additionally writes files typically useful for post-hoc analysis\
+ \ (the default); 3 additionally generates files for enhanced connectome visualisation\
+ \ and copies the entire whole-brain tractogram; 4 additionally generates a full\
+ \ copy of the script scratch directory (with all intermediate files retained)\
+ \ to the output directory (and this applies to all analysis levels) If\
+ \ running participant-level analysis using the script as a standalone tool rather\
+ \ than inside the provided container, data pertaining to atlas parcellations can\
+ \ no longer be guaranteed to be stored at a specific location on the filesystem.\
+ \ In this case, the user will most likely need to manually specify the location\
+ \ where the corresponding parcellation is stored using the -atlas_path option. --parcellationDocumentation
\nError Reporting
\n\
+ --debug
\
\ option, which will provide additional information at the\nterminal, and preserve\
\ temporary files generated by the script within your target output\ndirectory,\
- \ which can be forwarded to the developer.Acknowledgements
\nCitation
\n\
- Acknowledgements
\n\
+ Citation
\nHelp page
\n\
-
\nSynopsis
\nUsage
\nmrtrix3_connectome.py bids_dir output_dir analysis_level\
+
Help page
\n
\nSynopsis
\nUsage
\n
\nmrtrix3_connectome.py bids_dir output_dir analysis_level\
\ [ options ]\n
\n
\nDescription
\nOptions
\n\n
\n
The\
- \ verbosity of script output (number from 1 to 4).Options that are relevant to participant-level analysis
\n\n
\n
The\
+ \ options are: preproc, participant, group.Description
\n\
+ Options
\n\n
\n
The\
+ \ verbosity of script output (number from 1 to 4).Options\
+ \ that are relevant to participant-level analysis
\n\n
The\
\ choice of connectome parcellation scheme (compulsory for participant-level analysis);\
\ options are: aal, aal2, brainnetome246fs, brainnetome246mni, craddock200, craddock400,\
\ desikan, destrieux, hcpmmp1, none, perry512, yeo7fs, yeo7mni, yeo17fs, yeo17mni.
--template_reg software
The choice\
\ of registration software for mapping subject to template space; options are:\
- \ ants, fsl.
--participant_label
The\
+
--participant_label
The\
\ label(s) of the participant(s) that should be analyzed.
--session_label
The\
\ session(s) within each participant that should be analyzed.
-d/--debug
display debugging messages.
-h/--help
display this information page and\
- \ exit.
-n/--n_cpus number
use this number\
- \ of threads in multi-threaded applications (set to 0 to disable multi-threading).
-d/--debug
display\
+ \ debugging messages.
-h/--help
display\
+ \ this information page and exit.
-n/--n_cpus number
use\
+ \ this number of threads in multi-threaded applications (set to 0 to disable multi-threading).
--scratch /path/to/scratch/
manually specify\
\ the path in which to generate the scratch directory.
--skip-bids-validator
Skip\
\ BIDS validation
-v/--version
display\
@@ -76470,7 +76476,7 @@ bids-apps/MRtrix3_connectome:
- bidsapp
- diffusion-mri
- mri
- updated_at: 1695969616.0
+ updated_at: 1700828672.0
bids-apps/freesurfer:
data_format: 2
description: BIDS app wrapping recon-all from FreeSurfer
@@ -84853,40 +84859,40 @@ connor-lab/singularity-recipes:
data_format: 2
description: A collection of Singularity recipes useful for our nextflow pipelines
filenames:
- - Singularity.sierrapy
- - Singularity.variant_calling
- - Singularity.kraken2
- - Singularity.quast
- - Singularity.centrifuge
- - Singularity.shovill
- - Singularity.mash
- - Singularity.abricate
+ - Singularity.prokka
- Singularity.bbtools
- - Singularity.seqtk
- Singularity.taxonkit
- - Singularity.cd-hit
- - Singularity.wtdbg2
- - Singularity.deeptools
- - Singularity.rtg
- - Singularity.minimap2
- Singularity.iqtree
+ - Singularity.mlst
+ - Singularity.iva
+ - Singularity.minimap2
+ - Singularity.shiver
+ - Singularity.vsearch
- Singularity.trim_galore
+ - Singularity.kraken2
+ - Singularity.shovill
+ - Singularity.interop
+ - Singularity.centrifuge
+ - Singularity.variant_calling
+ - Singularity.multiqc
- Singularity.snapperdb_v3
+ - Singularity.ariba
+ - Singularity.canu
+ - Singularity.abricate
+ - Singularity.kronatools
+ - Singularity.cd-hit
+ - Singularity.sierrapy
+ - Singularity.seqtk
+ - Singularity.rtg
- Singularity.snapperdb
- - Singularity.mykrobe-atlas
- - Singularity.mlst
+ - Singularity.deeptools
+ - Singularity.wtdbg2
- Singularity.shiver_init
- - Singularity.prokka
- - Singularity.canu
- - Singularity.multiqc
- - Singularity.pengu-ddt
- - Singularity.interop
+ - Singularity.mash
+ - Singularity.quast
- Singularity.assembly_improvement
- - Singularity.kronatools
- - Singularity.iva
- - Singularity.ariba
- - Singularity.vsearch
- - Singularity.shiver
+ - Singularity.mykrobe-atlas
+ - Singularity.pengu-ddt
full_name: connor-lab/singularity-recipes
latest_release: null
readme: '
If you wish to keep the models stored elsewhere, edit the local_path
\
\ accordingly.
MAVEN is an R shiny app which enables integrated bioinformatics and chemoinformatics analysis for mechansism of action analysis and visualisation.
@@ -128471,8 +128489,8 @@ laylagerami/MAVEN: this program. If not, see https://www.gnu.org/licenses/. ' - stargazers_count: 7 - subscribers_count: 2 + stargazers_count: 11 + subscribers_count: 3 topics: - bioinformatics - chemoinformatics @@ -128484,7 +128502,7 @@ laylagerami/MAVEN: - dorothea - progeny - pidgin - updated_at: 1664355525.0 + updated_at: 1701805357.0 lbnl-science-it/atlas: data_format: 2 description: SCG collaboration with ETA on BEAM/Atlas project @@ -130476,17 +130494,17 @@ lscsoft/bilby: data_format: 2 description: null filenames: - - containers/Singularity.0.4.1 - - containers/Singularity.0.3.5 - - containers/Singularity.0.3.6 - containers/Singularity.0.4.0 - containers/Singularity.0.3.3 + - containers/Singularity.0.3.5 + - containers/Singularity.0.3.6 + - containers/Singularity.0.4.1 full_name: lscsoft/bilby latest_release: null - stargazers_count: 42 + stargazers_count: 44 subscribers_count: 6 topics: [] - updated_at: 1700137442.0 + updated_at: 1702650188.0 lscsoft/bilby_pipe: data_format: 2 description: null @@ -137633,140 +137651,124 @@ mkandes/naked-singularity: around the software applications, frameworks, and libraries you need to run on high-performance computing systems. filenames: - - definition-files/tensorflow/Singularity.tensorflow-2.9.2-ubuntu-20.04-cuda-11.2-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3 - - definition-files/tensorflow/Singularity.tensorflow-2.5.1-ubuntu-18.04-cuda-11.2-mlnx-ofed-4.7-3.2.9.0-openmpi-4.0.5 - - definition-files/tensorflow/Singularity.tensorflow-2.5.0-ubuntu-18.04-cuda-11.2-openmpi-4.0.5 - - definition-files/tensorflow/Singularity.tensorflow-2.7.3-ubuntu-20.04-cuda-11.2-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 - - definition-files/tensorflow/Singularity.tensorflow-2.5.3-ubuntu-18.04-cuda-11.2-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 - - definition-files/tensorflow/Singularity.tensorflow-2.8.2-ubuntu-20.04-cuda-11.2-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3 - - definition-files/tensorflow/Singularity.tensorflow-2.3.0-ubuntu-18.04-cuda-10.1.168-openmpi-3.1.4 - - definition-files/tensorflow/Singularity.tensorflow-2.8.3-ubuntu-20.04-cuda-11.2-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3 - - definition-files/omb/Singularity.omb-7.1-ubuntu-18.04-mlnx-ofed-5.8-2.0.3.0-mvapich-2.3.7 - - definition-files/omb/Singularity.omb-5.7-ubuntu-18.04-mlnx-ofed-4.7-3.2.9.0-openmpi-3.1.6 - - definition-files/omb/Singularity.omb-7.1-ubuntu-20.04-mlnx-ofed-5.8-2.0.3.0-openmpi-4.1.3 - - definition-files/omb/Singularity.omb-5.9-ubuntu-18.04-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3 - - definition-files/omb/Singularity.omb-7.1-ubuntu-18.04-mlnx-ofed-5.8-2.0.3.0-openmpi-4.1.3 - - definition-files/omb/Singularity.omb-5.6.3-ubuntu-18.04-mvapich-2.3.2 - - definition-files/omb/Singularity.omb-7.1-ubuntu-18.04-openmpi-4.1.3 - - definition-files/omb/Singularity.omb-5.7-centos-7.7.1908-openmpi-4.0.5 - - definition-files/omb/Singularity.omb-5.6.3-ubuntu-18.04-openmpi-3.1.6 - - definition-files/omb/Singularity.omb-5.7-ubuntu-18.04-cuda-11.2-openmpi-4.0.5 - - definition-files/omb/Singularity.omb-7.1-ubuntu-20.04-mlnx-ofed-5.8-2.0.3.0-mvapich-2.3.7 - - definition-files/omb/Singularity.omb-5.7-ubuntu-18.04-openmpi-4.0.5 - - definition-files/omb/Singularity.omb-5.9-ubuntu-20.04-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 - - definition-files/omb/Singularity.omb-5.9-ubuntu-18.04-cuda-10.2-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3 - - definition-files/omb/Singularity.omb-5.9-ubuntu-20.04-cuda-11.4-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 - - definition-files/omb/Singularity.omb-5.9-ubuntu-20.04-cuda-11.4-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3 - - definition-files/omb/Singularity.omb-5.8-ubuntu-18.04-mlnx-ofed-4.6-1.0.1.1-openmpi-3.1.4 - - definition-files/omb/Singularity.omb-5.7-ubuntu-18.04-mlnx-ofed-4.7-3.2.9.0-openmpi-4.0.5 - - definition-files/omb/Singularity.omb-5.8-ubuntu-18.04-cuda-10.2-mlnx-ofed-4.6-1.0.1.1-openmpi-3.1.4 - - definition-files/omb/Singularity.omb-5.6.3-centos-7.9.2009-mvapich-2.3.2 - - definition-files/omb/Singularity.omb-5.9-ubuntu-18.04-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 - - definition-files/omb/Singularity.omb-5.7-centos-7.7.1908-openmpi-3.1.6 - - definition-files/omb/Singularity.omb-7.1-ubuntu-20.04-openmpi-4.1.3 - - definition-files/omb/Singularity.omb-5.9-ubuntu-20.04-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3 - - definition-files/omb/Singularity.omb-5.6.3-ubuntu-18.04-cuda-10.1.168-openmpi-3.1.4 - - definition-files/omb/Singularity.omb-5.6.3-ubuntu-18.04-openmpi-3.1.4 - - definition-files/omb/Singularity.omb-7.1-ubuntu-22.04-mlnx-ofed-5.8-2.0.3.0-openmpi-4.1.3 - - definition-files/omb/Singularity.omb-7.1-ubuntu-22.04-openmpi-4.1.3 - - definition-files/omb/Singularity.omb-5.7-centos-7.7.1908-cuda-11.0-openmpi-3.1.6 - - definition-files/omb/Singularity.omb-5.8-ubuntu-18.04-cuda-11.2-mlnx-ofed-4.7-3.2.9.0-openmpi-4.0.5 - - definition-files/omb/Singularity.omb-5.6.3-centos-7.9.2009-openmpi-3.1.4 - - definition-files/omb/Singularity.omb-5.7-ubuntu-18.04-mlnx-ofed-4.7-3.2.9.0-mvapich-2.3.6 - - definition-files/omb/Singularity.omb-5.9-ubuntu-18.04-cuda-10.2-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 - - definition-files/pytorch/Singularity.pytorch-1.8.2-ubuntu-18.04-cuda-11.2-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 - - definition-files/pytorch/Singularity.pytorch-1.10.2-ubuntu-20.04-cuda-11.2-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3 - definition-files/pytorch/Singularity.pytorch-1.8.2-ubuntu-18.04-cuda-10.2-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 + - definition-files/pytorch/Singularity.pytorch-1.10.2-ubuntu-20.04-cuda-11.2-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3 + - definition-files/pytorch/Singularity.pytorch-1.8.2-ubuntu-18.04-cuda-11.2-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 - definition-files/pytorch/Singularity.pytorch-1.12.1-ubuntu-20.04-cuda-11.2-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3 - - definition-files/singularity/Singularity.singularity-3.7.4-ubuntu-18.04 - - definition-files/xcrysden/Singularity.xcrysden-1.6.2-ubuntu-18.04 - definition-files/gromacs/Singularity.gromacs-2020.7-ubuntu-18.04-cuda-10.2 - - definition-files/visit/Singularity.visit-3.1.4-ubuntu-18.04-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 - - definition-files/visit/Singularity.visit-3.1.4-ubuntu-18.04-mlnx-ofed-5.8-2.0.3.0-openmpi-4.1.3 - - definition-files/mxnet/Singularity.mxnet-1.7.0-ubuntu-18.04-cuda-10.1.168-openmpi-3.1.4 - - definition-files/deepbench/Singularity.deepbench-da81ba7-ubuntu-18.04-cuda-10.2-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 - - definition-files/deepbench/Singularity.deepbench-da81ba7-ubuntu-18.04-cuda-11.2-mlnx-ofed-4.7-3.2.9.0-openmpi-3.1.6 - - definition-files/stream/Singularity.stream-5.10-ubuntu-18.04 - - definition-files/spark/Singularity.spark-3.1.2-hadoop-3.2-ubuntu-18.04 - - definition-files/spark/Singularity.spark-3.2.1-hadoop-3.2-ubuntu-20.04 - - definition-files/spark/Singularity.spark-2.3.1-hadoop-2.7-ubuntu-18.04 - - definition-files/beast/Singularity.beast-1.10.4-ubuntu-18.04-cuda-10.2 - - definition-files/beast/Singularity.beast-2.6.1-ubuntu-18.04-cuda-10.2 - - definition-files/centos/Singularity.centos-7.7.1908-cuda-11.0-openmpi-4.0.5 - - definition-files/centos/Singularity.centos-7.7.1908-openmpi-4.0.5 - - definition-files/centos/Singularity.centos-7.9.2009-cuda-10.1.168 - - definition-files/centos/Singularity.centos-7.7.1908-cuda-11.0 - - definition-files/centos/Singularity.centos-7.9.2009 - - definition-files/centos/Singularity.centos-7.7.1908 - - definition-files/centos/Singularity.centos-7.7.1908-cuda-11.0-openmpi-3.1.6 - - definition-files/centos/Singularity.centos-7.9.2009-mvapich-2.3.2 - - definition-files/centos/Singularity.centos-7.7.1908-openmpi-3.1.6 - - definition-files/centos/Singularity.centos-7.9.2009-openmpi-3.1.4 - definition-files/anaconda/Singularity.anaconda3-py39-2021.11-ubuntu-20.04 - definition-files/anaconda/Singularity.anaconda2-py27-2019.10-ubuntu-18.04 - - definition-files/fenics/Singularity.fenics-2019.1.0-ubuntu-18.04-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 - - definition-files/miniconda/Singularity.miniconda3-py37-4.11.0-ubuntu-20.04 - - definition-files/miniconda/Singularity.miniconda3-py37-4.9.2-ubuntu-18.04 - - definition-files/miniconda/Singularity.miniconda2-py27-4.8.3-ubuntu-18.04 - - definition-files/miniconda/Singularity.miniconda3-py39-4.9.2-ubuntu-18.04 - - definition-files/miniconda/Singularity.miniconda3-py38-4.11.0-ubuntu-20.04 - - definition-files/miniconda/Singularity.miniconda3-py38-4.9.2-ubuntu-18.04 - - definition-files/miniconda/Singularity.miniconda3-py39-4.11.0-ubuntu-20.04 - - definition-files/paraview/Singularity.paraview-5.10.1-ubuntu-18.04-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6-osmesa-21.3.1 - definition-files/paraview/Singularity.paraview-5.9.0-ubuntu-18.04-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6-osmesa-20.1.5 - - definition-files/wgs/Singularity.wgs-0.0.1 + - definition-files/paraview/Singularity.paraview-5.10.1-ubuntu-18.04-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6-osmesa-21.3.1 - definition-files/ciml/Singularity.tape-0.4 - definition-files/ciml/Singularity.esm-0.3.1 + - definition-files/ciml/Singularity.pyspark-3.1.2 - definition-files/ciml/Singularity.r-3.6.1 - definition-files/ciml/Singularity.sparkr-2.3.1 - - definition-files/ciml/Singularity.pyspark-3.1.2 - - definition-files/ior/Singularity.ior-3.3.0-ubuntu-20.04-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3 + - definition-files/mxnet/Singularity.mxnet-1.7.0-ubuntu-18.04-cuda-10.1.168-openmpi-3.1.4 - definition-files/ior/Singularity.ior-3.3.0rc1-ubuntu-18.04-openmpi-3.1.4 - definition-files/ior/Singularity.ior-3.3.0rc1-ubuntu-18.04-openmpi-3.1.6 - - definition-files/ior/Singularity.ior-3.3.0-ubuntu-18.04-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3 - - definition-files/ior/Singularity.ior-3.3.0-ubuntu-20.04-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 - definition-files/ior/Singularity.ior-3.3.0-ubuntu-18.04-openmpi-4.0.5 - definition-files/ior/Singularity.ior-3.3.0-ubuntu-18.04-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 - - definition-files/hpl/Singularity.hpl-2.3-ubuntu-20.04-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3-openblas-0.3.18 - - definition-files/hpl/Singularity.hpl-2.3-ubuntu-18.04-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3-openblas-0.3.18 - - definition-files/hpl/Singularity.hpl-2.3-ubuntu-20.04-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6-openblas-0.3.18 - - definition-files/hpl/Singularity.hpl-2.3-ubuntu-18.04-openmpi-3.1.4-openblas-0.3.10 - - definition-files/hpl/Singularity.hpl-2.3-ubuntu-18.04-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6-openblas-0.3.18 - - definition-files/hpl/Singularity.hpl-2.3-ubuntu-18.04-openmpi-3.1.6-openblas-0.3.10 - - definition-files/hpl/Singularity.hpl-2.3-ubuntu-18.04-openmpi-4.0.5-openblas-0.3.14 - - definition-files/ubuntu/Singularity.ubuntu-20.04-mlnx-ofed-5.8-2.0.3.0 - - definition-files/ubuntu/Singularity.ubuntu-20.04-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 - - definition-files/ubuntu/Singularity.ubuntu-20.04 + - definition-files/ior/Singularity.ior-3.3.0-ubuntu-18.04-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3 + - definition-files/ior/Singularity.ior-3.3.0-ubuntu-20.04-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 + - definition-files/ior/Singularity.ior-3.3.0-ubuntu-20.04-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3 + - definition-files/wgs/Singularity.wgs-0.0.1 - definition-files/ubuntu/Singularity.ubuntu-20.04-cuda-11.2-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3 - - definition-files/ubuntu/Singularity.ubuntu-18.04-cuda-10.2-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 - - definition-files/ubuntu/Singularity.ubuntu-18.04-cuda-11.2-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3 - - definition-files/ubuntu/Singularity.ubuntu-18.04-mlnx-ofed-4.9-4.1.7.0 + - definition-files/ubuntu/Singularity.ubuntu-20.04-mlnx-ofed-5.8-2.0.3.0 + - definition-files/ubuntu/Singularity.ubuntu-20.04-openmpi-4.1.3 - definition-files/ubuntu/Singularity.ubuntu-20.04-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3 + - definition-files/ubuntu/Singularity.ubuntu-20.04-cuda-11.2 + - definition-files/ubuntu/Singularity.ubuntu-20.04-mlnx-ofed-5.8-2.0.3.0-openmpi-4.1.3 + - definition-files/ubuntu/Singularity.ubuntu-20.04 + - definition-files/ubuntu/Singularity.ubuntu-20.04-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 - definition-files/ubuntu/Singularity.ubuntu-20.04-mlnx-ofed-4.9-4.1.7.0 - - definition-files/ubuntu/Singularity.ubuntu-22.04-openmpi-4.1.3 - - definition-files/ubuntu/Singularity.ubuntu-20.04-cuda-11.2-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 - - definition-files/ubuntu/Singularity.ubuntu-18.04-cuda-10.2 - - definition-files/ubuntu/Singularity.ubuntu-18.04-mlnx-ofed-5.8-2.0.3.0 - - definition-files/ubuntu/Singularity.ubuntu-18.04-mlnx-ofed-5.8-2.0.3.0-mvapich-2.3.7 - - definition-files/ubuntu/Singularity.ubuntu-18.04-cuda-11.2-mlnx-ofed-4.9-4.1.7.0 - definition-files/ubuntu/Singularity.ubuntu-22.04-mlnx-ofed-5.8-2.0.3.0 + - definition-files/ubuntu/Singularity.ubuntu-22.04 + - definition-files/ubuntu/Singularity.ubuntu-20.04-cuda-11.2-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 - definition-files/ubuntu/Singularity.ubuntu-20.04-mlnx-ofed-5.8-2.0.3.0-mvapich-2.3.7 - definition-files/ubuntu/Singularity.ubuntu-22.04-mlnx-ofed-5.8-2.0.3.0-mvapich-2.3.7 - - definition-files/ubuntu/Singularity.ubuntu-18.04-cuda-11.2 - - definition-files/ubuntu/Singularity.ubuntu-22.04-mlnx-ofed-5.8-2.0.3.0-openmpi-4.1.3 - - definition-files/ubuntu/Singularity.ubuntu-18.04-cuda-10.2-mlnx-ofed-4.9-4.1.7.0 - - definition-files/ubuntu/Singularity.ubuntu-18.04-cuda-10.2-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3 - - definition-files/ubuntu/Singularity.ubuntu-18.04-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 - definition-files/ubuntu/Singularity.ubuntu-20.04-cuda-11.2-mlnx-ofed-4.9-4.1.7.0 - - definition-files/ubuntu/Singularity.ubuntu-18.04-cuda-11.2-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 - - definition-files/ubuntu/Singularity.ubuntu-20.04-openmpi-4.1.3 - - definition-files/ubuntu/Singularity.ubuntu-18.04-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3 - - definition-files/ubuntu/Singularity.ubuntu-18.04 - - definition-files/ubuntu/Singularity.ubuntu-20.04-cuda-11.2 - - definition-files/ubuntu/Singularity.ubuntu-20.04-mlnx-ofed-5.8-2.0.3.0-openmpi-4.1.3 - - definition-files/ubuntu/Singularity.ubuntu-22.04 - - definition-files/ubuntu/Singularity.ubuntu-18.04-mlnx-ofed-5.8-2.0.3.0-openmpi-4.1.3 - - definition-files/ubuntu/Singularity.ubuntu-18.04-openmpi-4.1.3 + - definition-files/ubuntu/Singularity.ubuntu-22.04-mlnx-ofed-5.8-2.0.3.0-openmpi-4.1.3 + - definition-files/ubuntu/Singularity.ubuntu-22.04-openmpi-4.1.3 + - definition-files/xcrysden/Singularity.xcrysden-1.6.2-ubuntu-18.04 + - definition-files/miniconda/Singularity.miniconda3-py37-4.9.2-ubuntu-18.04 + - definition-files/miniconda/Singularity.miniconda3-py38-4.9.2-ubuntu-18.04 + - definition-files/miniconda/Singularity.miniconda2-py27-4.8.3-ubuntu-18.04 + - definition-files/miniconda/Singularity.miniconda3-py37-4.11.0-ubuntu-20.04 + - definition-files/miniconda/Singularity.miniconda3-py39-4.11.0-ubuntu-20.04 + - definition-files/miniconda/Singularity.miniconda3-py39-4.9.2-ubuntu-18.04 + - definition-files/miniconda/Singularity.miniconda3-py38-4.11.0-ubuntu-20.04 + - definition-files/beast/Singularity.beast-1.10.4-ubuntu-18.04-cuda-10.2 + - definition-files/beast/Singularity.beast-2.6.1-ubuntu-18.04-cuda-10.2 + - definition-files/tensorflow/Singularity.tensorflow-2.8.2-ubuntu-20.04-cuda-11.2-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3 + - definition-files/tensorflow/Singularity.tensorflow-2.9.2-ubuntu-20.04-cuda-11.2-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3 + - definition-files/tensorflow/Singularity.tensorflow-2.5.0-ubuntu-18.04-cuda-11.2-openmpi-4.0.5 + - definition-files/tensorflow/Singularity.tensorflow-2.7.3-ubuntu-20.04-cuda-11.2-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 + - definition-files/tensorflow/Singularity.tensorflow-2.8.3-ubuntu-20.04-cuda-11.2-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3 + - definition-files/tensorflow/Singularity.tensorflow-2.3.0-ubuntu-18.04-cuda-10.1.168-openmpi-3.1.4 + - definition-files/tensorflow/Singularity.tensorflow-2.5.3-ubuntu-18.04-cuda-11.2-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 + - definition-files/tensorflow/Singularity.tensorflow-2.5.1-ubuntu-18.04-cuda-11.2-mlnx-ofed-4.7-3.2.9.0-openmpi-4.0.5 + - definition-files/singularity/Singularity.singularity-3.7.4-ubuntu-18.04 + - definition-files/omb/Singularity.omb-5.8-ubuntu-18.04-mlnx-ofed-4.6-1.0.1.1-openmpi-3.1.4 + - definition-files/omb/Singularity.omb-7.1-ubuntu-22.04-mlnx-ofed-5.8-2.0.3.0-openmpi-4.1.3 + - definition-files/omb/Singularity.omb-5.9-ubuntu-20.04-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3 + - definition-files/omb/Singularity.omb-5.6.3-ubuntu-18.04-mvapich-2.3.2 + - definition-files/omb/Singularity.omb-7.1-ubuntu-18.04-openmpi-4.1.3 + - definition-files/omb/Singularity.omb-7.1-ubuntu-20.04-mlnx-ofed-5.8-2.0.3.0-openmpi-4.1.3 + - definition-files/omb/Singularity.omb-5.9-ubuntu-20.04-cuda-11.4-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3 + - definition-files/omb/Singularity.omb-5.6.3-centos-7.9.2009-mvapich-2.3.2 + - definition-files/omb/Singularity.omb-5.7-ubuntu-18.04-openmpi-4.0.5 + - definition-files/omb/Singularity.omb-5.6.3-ubuntu-18.04-openmpi-3.1.6 + - definition-files/omb/Singularity.omb-5.8-ubuntu-18.04-cuda-11.2-mlnx-ofed-4.7-3.2.9.0-openmpi-4.0.5 + - definition-files/omb/Singularity.omb-5.9-ubuntu-20.04-cuda-11.4-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 + - definition-files/omb/Singularity.omb-5.6.3-ubuntu-18.04-cuda-10.1.168-openmpi-3.1.4 + - definition-files/omb/Singularity.omb-5.7-ubuntu-18.04-mlnx-ofed-4.7-3.2.9.0-mvapich-2.3.6 + - definition-files/omb/Singularity.omb-5.7-ubuntu-18.04-mlnx-ofed-4.7-3.2.9.0-openmpi-3.1.6 + - definition-files/omb/Singularity.omb-7.1-ubuntu-22.04-openmpi-4.1.3 + - definition-files/omb/Singularity.omb-5.9-ubuntu-18.04-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 + - definition-files/omb/Singularity.omb-5.9-ubuntu-18.04-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3 + - definition-files/omb/Singularity.omb-5.9-ubuntu-20.04-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 + - definition-files/omb/Singularity.omb-5.6.3-ubuntu-18.04-openmpi-3.1.4 + - definition-files/omb/Singularity.omb-5.7-centos-7.7.1908-openmpi-4.0.5 + - definition-files/omb/Singularity.omb-5.6.3-centos-7.9.2009-openmpi-3.1.4 + - definition-files/omb/Singularity.omb-5.7-ubuntu-18.04-cuda-11.2-openmpi-4.0.5 + - definition-files/omb/Singularity.omb-5.9-ubuntu-18.04-cuda-10.2-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3 + - definition-files/omb/Singularity.omb-7.1-ubuntu-18.04-mlnx-ofed-5.8-2.0.3.0-mvapich-2.3.7 + - definition-files/omb/Singularity.omb-5.9-ubuntu-18.04-cuda-10.2-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 + - definition-files/omb/Singularity.omb-5.7-centos-7.7.1908-openmpi-3.1.6 + - definition-files/omb/Singularity.omb-5.7-ubuntu-18.04-mlnx-ofed-4.7-3.2.9.0-openmpi-4.0.5 + - definition-files/omb/Singularity.omb-7.1-ubuntu-18.04-mlnx-ofed-5.8-2.0.3.0-openmpi-4.1.3 + - definition-files/omb/Singularity.omb-7.1-ubuntu-20.04-openmpi-4.1.3 + - definition-files/omb/Singularity.omb-7.1-ubuntu-20.04-mlnx-ofed-5.8-2.0.3.0-mvapich-2.3.7 + - definition-files/omb/Singularity.omb-5.8-ubuntu-18.04-cuda-10.2-mlnx-ofed-4.6-1.0.1.1-openmpi-3.1.4 + - definition-files/omb/Singularity.omb-5.7-centos-7.7.1908-cuda-11.0-openmpi-3.1.6 + - definition-files/hpl/Singularity.hpl-2.3-ubuntu-18.04-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3-openblas-0.3.18 + - definition-files/hpl/Singularity.hpl-2.3-ubuntu-18.04-openmpi-3.1.4-openblas-0.3.10 + - definition-files/hpl/Singularity.hpl-2.3-ubuntu-18.04-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6-openblas-0.3.18 + - definition-files/hpl/Singularity.hpl-2.3-ubuntu-20.04-mlnx-ofed-4.9-4.1.7.0-openmpi-4.1.3-openblas-0.3.18 + - definition-files/hpl/Singularity.hpl-2.3-ubuntu-18.04-openmpi-3.1.6-openblas-0.3.10 + - definition-files/hpl/Singularity.hpl-2.3-ubuntu-20.04-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6-openblas-0.3.18 + - definition-files/hpl/Singularity.hpl-2.3-ubuntu-18.04-openmpi-4.0.5-openblas-0.3.14 + - definition-files/centos/Singularity.centos-7.7.1908-openmpi-3.1.6 + - definition-files/centos/Singularity.centos-7.7.1908-cuda-11.0-openmpi-4.0.5 + - definition-files/centos/Singularity.centos-7.7.1908-cuda-11.0-openmpi-3.1.6 + - definition-files/centos/Singularity.centos-7.7.1908-cuda-11.0 + - definition-files/centos/Singularity.centos-7.9.2009 + - definition-files/centos/Singularity.centos-7.9.2009-openmpi-3.1.4 + - definition-files/centos/Singularity.centos-7.9.2009-cuda-10.1.168 + - definition-files/centos/Singularity.centos-7.7.1908 + - definition-files/centos/Singularity.centos-7.7.1908-openmpi-4.0.5 + - definition-files/centos/Singularity.centos-7.9.2009-mvapich-2.3.2 + - definition-files/fenics/Singularity.fenics-2019.1.0-ubuntu-18.04-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 + - definition-files/spark/Singularity.spark-2.3.1-hadoop-2.7-ubuntu-18.04 + - definition-files/spark/Singularity.spark-3.2.1-hadoop-3.2-ubuntu-20.04 + - definition-files/spark/Singularity.spark-3.1.2-hadoop-3.2-ubuntu-18.04 + - definition-files/stream/Singularity.stream-5.10-ubuntu-18.04 + - definition-files/deepbench/Singularity.deepbench-da81ba7-ubuntu-18.04-cuda-10.2-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 + - definition-files/deepbench/Singularity.deepbench-da81ba7-ubuntu-18.04-cuda-11.2-mlnx-ofed-4.7-3.2.9.0-openmpi-3.1.6 + - definition-files/visit/Singularity.visit-3.1.4-ubuntu-18.04-mlnx-ofed-4.9-4.1.7.0-openmpi-3.1.6 + - definition-files/visit/Singularity.visit-3.1.4-ubuntu-18.04-mlnx-ofed-5.8-2.0.3.0-openmpi-4.1.3 full_name: mkandes/naked-singularity latest_release: null readme: '3.1.5
+3.1.6
Friday, November 3rd, 2023
+Wednesday, December 13th, 2023
' stargazers_count: 56 @@ -137933,17 +137935,17 @@ ml4ai/UA-hpc-containers: data_format: 2 description: Container recipes for use with the U of A HPC resources filenames: - - Singularity.pytorch - - Singularity.cuda9_py36 - - Singularity.delphi - - Singularity.numba - - Singularity.tensorflow - - Singularity.torch - Singularity.caffe2 - - Singularity.nvidia_docker + - Singularity.torch - Singularity.im2markup + - Singularity.numba - Singularity.keras + - Singularity.cuda9_py36 + - Singularity.delphi + - Singularity.nvidia_docker - Singularity.pytorch_skimage + - Singularity.pytorch + - Singularity.tensorflow - Singularity.dynet - word2vec/Singularity.w2v - openmnt/Singularity.opennmt @@ -144902,9 +144904,9 @@ neurodebian/neurodebian: data_format: 2 description: The ultimate computational platform for Neuroscience filenames: - - singularity/Singularity - singularity/Singularity.10.20190801 - singularity/Singularity.obs + - singularity/Singularity full_name: neurodebian/neurodebian latest_release: debian/0.40.1 readme: " == =============== === =\n\
@@ -145433,15 +145435,15 @@ nickjer/singularity-rstudio:
data_format: 2
description: RStudio Server in a Singularity container
filenames:
- - Singularity
- Singularity.3.6.2
+ - Singularity
full_name: nickjer/singularity-rstudio
latest_release: null
readme: "Singularity RStudio Server
\n\
-
\nRStudio Server. It was built on top of the base\nSingularity\ \ image nickjer/singularity-r.
\n\This is still a work in progress.
\nYou can build a local Singularity\
- \ image named singularity-rstudio.simg
with:
sudo singularity build singularity-rstudio.simg\
+ anchor\" aria-hidden=\"true\" tabindex=\"-1\" href=\"#build\">Build\nYou can build\
+ \ a local Singularity image named singularity-rstudio.simg
with:
\n\
+ sudo singularity build singularity-rstudio.simg\
\ Singularity
\nDeploy
\nInstead of building it yourself you\
- \ can download the pre-built image from\nDeploy\n
Instead of building\
+ \ it yourself you can download the pre-built image from\nSingularity Hub with:
\nsingularity pull --name singularity-rstudio.simg shub://nickjer/singularity-rstudio
\n\
- Run
\n\
+ Run
\n\
RStudio Server
\nThe rserver
command is launched\
- \ using the default run command:
\nsingularity run singularity-rstudio.simg
\nor as an explicit\
- \ app:
\nsingularity run\
- \ --app rserver singularity-rstudio.simg
\nExample:
\n$ singularity\
- \ run --app rserver singularity-rstudio.simg --help\ncommand-line options:\n\nverify:\n --verify-installation arg (=0) verify the current installation\n\
- \nserver:\n --server-working-dir\
- \ arg (=/) program working directory\n --server-user\
- \ arg (=rstudio-server) program user\n --server-daemonize\
- \ arg (=0) run program as daemon\n --server-app-armor-enabled\
- \ arg (=1) is app armor enabled for this session\n --server-set-umask arg (=1) set the umask to 022 on startup\n\
- \n...
\nSimple Password\
- \ Authentication
\nTo secure the RStudio Server you will need to:
\n\
- \n- Launch the container with the environment variable
RSTUDIO_PASSWORD
\
- \ set to\na password of your choosing. \n- Launch the
rserver
\
- \ command with the PAM helper script rstudio_auth
. \n
\n\
- An example is given as:
\nRSTUDIO_PASSWORD=\"password\" singularity run singularity-rstudio.simg \\\
- \n --auth-none 0 \\\n --auth-pam-helper rstudio_auth
\nNow when\
- \ you attempt to access the RStudio Server you will be presented with a\nlog in\
- \ form. You can log in with your current user name and password you set in\nRSTUDIO_PASSWORD
.
\n\
+ \ tabindex=\"-1\" href=\"#rstudio-server\">RStudio Server\nThe rserver
\
+ \ command is launched using the default run command:
\nsingularity run singularity-rstudio.simg
\n\
+ or as an explicit app:
\nsingularity run --app rserver singularity-rstudio.simg
\nExample:
\n\
+ $ singularity run --app rserver singularity-rstudio.simg --help\ncommand-line options:\n\nverify:\n\
+ --verify-installation arg (=0) verify the current\
+ \ installation\n\nserver:\n --server-working-dir arg (=/) program working directory\n\
+ --server-user arg (=rstudio-server) program user\n\
+ --server-daemonize arg (=0) run program as daemon\n\
+ --server-app-armor-enabled arg (=1) is app armor enabled\
+ \ for this session\n --server-set-umask arg (=1)\
+ \ set the umask to 022 on startup\n\n...
\n\
+ Simple Password Authentication
\n\
+ To secure the RStudio Server you will need to:
\n\n- Launch the container\
+ \ with the environment variable
RSTUDIO_PASSWORD
set to\na password\
+ \ of your choosing. \n- Launch the
rserver
command with the\
+ \ PAM helper script rstudio_auth
. \n
\nAn example is given\
+ \ as:
\nRSTUDIO_PASSWORD=\"password\" singularity run singularity-rstudio.simg \\\n --auth-none 0\
+ \ \\\n --auth-pam-helper rstudio_auth
\nNow when you attempt to\
+ \ access the RStudio Server you will be presented with a\nlog in form. You can\
+ \ log in with your current user name and password you set in\nRSTUDIO_PASSWORD
.
\n\
LDAP Authentication
\nAnother option is using\
- \ an LDAP (or Active Directory) server for\nauthentication. Configuration of the\
- \ LDAP authentication script ldap_auth
is\nhandled through the following\
- \ environment variables:
\n
LDAP_HOST
- the host name\
- \ of the LDAP serverLDAP_USER_DN
- the formatted string\
- \ (where %s
is replaced with the\nusername supplied during log in)\
- \ of the bind DN used for LDAP authenticationLDAP_CERT_FILE
\
+ true\" tabindex=\"-1\" href=\"#ldap-authentication\">LDAP Authentication\nAnother\
+ \ option is using an LDAP (or Active Directory) server for\nauthentication. Configuration\
+ \ of the LDAP authentication script ldap_auth
is\nhandled through\
+ \ the following environment variables:
LDAP_HOST
\
+ \ - the host name of the LDAP serverLDAP_USER_DN
- the\
+ \ formatted string (where %s
is replaced with the\nusername supplied\
+ \ during log in) of the bind DN used for LDAP authenticationLDAP_CERT_FILE
\
\ - the file containing the CA certificates used by\nthe LDAP server (default:\
\ use system CA certificates)An example for an LDAP server with\ \ signed SSL certificate from a trusted CA:
\nLDAP_CERT_FILE
\
\ (not\nthe host's path).\nSee nickjer/singularity-r for more\
- \ information on how to run R
and\nRscript
from within\
- \ this Singularity image.
Bug reports\ - \ and pull requests are welcome on GitHub at\nR and Rscript\n
See nickjer/singularity-r\
+ \ for more information on how to run R
and\nRscript
\
+ \ from within this Singularity image.
Bug reports and pull requests are welcome on GitHub at\nhttps://github.com/nickjer/singularity-rstudio.
\nThe code is\ - \ available as open source under the terms of the License\n\ +
The code is available as open source under the terms of the MIT License.
\n" - stargazers_count: 48 + stargazers_count: 50 subscribers_count: 6 topics: - rstudio-server - singularity-image - updated_at: 1683555311.0 + updated_at: 1702638588.0 nickjer/singularity-rstudio-spark: data_format: 2 description: Apache Spark with RStudio and the sparklyr package in a Singularity @@ -153464,11 +153467,11 @@ phelelani/nf-rnaSeqMetagen: data_format: 2 description: Metagenomics pipeline filenames: + - containers/Singularity.star - containers/Singularity.kraken2 + - containers/Singularity.multiQC - containers/Singularity.trinity - - containers/Singularity.star - containers/Singularity.upset - - containers/Singularity.multiQC full_name: phelelani/nf-rnaSeqMetagen latest_release: null readme: '\nbeautier_on_windows
:\
\ verifies\nbeautier
builds on Windows\n
lumier
: Shiny app to help create the function call neededSee examples.
\nbeautier
\
+ \n
See examples.
\nbeautier
\
\ can be installed:
master
branchdevelop
branchFor the latest CRAN version:
\n\ -install.packages(\"beautier\")
master
branchFor the latest stable\ - \ version:
\nremotes::install_github(\"ropensci/beautier\")
develop
\
- \ branchdevelop
branch\n\nFor the latest\ + \ CRAN version:
\ninstall.packages(\"beautier\")
master
branchFor the latest stable version:
\nremotes::install_github(\"ropensci/beautier\")
develop
branchFor the bleeding-edge version:
\nremotes::install_github(\"ropensci/beautier\", ref = \"develop\")
See FAQ.
\nThis works, and the interface is unlikely to change.
\n\ -This works partially, and the interface\ - \ may change as well.
\nThe tip dates file is a file\nthat needs to not have column,\ - \ nor row names.\nThe columns need to be tab separated.
\nSee \")
See FAQ.
\nThis works, and the interface is unlikely to change.
\nThis works partially, and the interface may\ + \ change as well.
\nThe tip dates\ + \ file is a file\nthat needs to not have column, nor row names.\nThe columns need\ + \ to be tab separated.
\nSee here\nfor an example, of which the first rows are shown here:
\nKF767106_Indonesia_1976_VII\t\
1976\nKF767104_Indonesia_1988_VII\t1988\nKF767105_Indonesia_1988_VII\t1988\nAY288998_Indonesia_1990_VII\t\
1990\n
\nIn the future, there probably will be a \xB4to_tipdates_file\xB4\ - \ function,\nto create a temporary tipdates file from a table.
\nbeautier
cannot do everything BEAUti
\
- \ can.
Here are some missing or (yet) unsupported features,\nsome are\ - \ linked to an Issue:
\nbeautier
cannot do everything BEAUti
can.
Here\ + \ are some missing or (yet) unsupported features,\nsome are linked to an Issue:
\n\ +BEAUti
)See CONTRIBUTING, at Submitting\
- \ use cases
See CONTRIBUTING, at 'Submitting code'
\nBEAUti
)See CONTRIBUTING, at Submitting use cases
See\ + \ CONTRIBUTING, at 'Submitting code'
\nSee CONTRIBUTING, at 'Submitting bugs'
\n\ -Sure, just add an Issue. Or send an email.
\nArticle about babette
:
babette
:\
- \ BEAUti 2, BEAST 2 and Tracer for R.\" Methods in Ecology and Evolution (2018).\
- \ https://doi.org/10.1111/2041-210X.13032\n\
- FASTA files anthus_aco.fas
and anthus_nd2.fas
\
- \ from:
FASTA file G_VII_pre2003_msa.fas
\
- \ from:
There's\ + \ something else I want to say\n
Sure, just add an Issue. Or send an email.
\n\ +Article about\
+ \ babette
:
babette
: BEAUti 2, BEAST 2 and Tracer for R.\" Methods\
+ \ in Ecology and Evolution (2018). https://doi.org/10.1111/2041-210X.13032\nFASTA files anthus_aco.fas
and anthus_nd2.fas
from:
FASTA file G_VII_pre2003_msa.fas
from:
So generally
\n\consensus.py -c clusters.tsv -a alt.mtx -r ref.mtx --soup_out soup.txt\
\ -v <freebayes vcf> --vcf_out cluster_genotypes.vcf --output_dir .\n
\n"
- stargazers_count: 137
+ stargazers_count: 140
subscribers_count: 10
topics:
- scrna-seq
@@ -198205,7 +198216,7 @@ wheaton5/souporcell:
- bioinformatics
- computational-biology
- genomics
- updated_at: 1700859338.0
+ updated_at: 1702347004.0
willgpaik/centos7_aci:
data_format: 2
description: Centos 7 base image for ACI
@@ -199648,10 +199659,10 @@ yaaig-ufrgs/NeuralFastDownward-FSM:
description: "\U0001F35D Code for the paper \"Understanding Sample Generation Strategies\
\ for Learning Heuristic Functions in Classical Planning.\""
filenames:
- - misc/releases/latest/Singularity
- misc/releases/19.12/Singularity.19.12
- misc/releases/19.06/Singularity.19.06
- misc/releases/20.06/Singularity.20.06
+ - misc/releases/latest/Singularity
full_name: yaaig-ufrgs/NeuralFastDownward-FSM
latest_release: null
readme: "