From 62ed310ba0ed039c98ed7af98c42be453a5b9cfb Mon Sep 17 00:00:00 2001 From: github-actions Date: Thu, 21 Sep 2023 02:24:33 +0000 Subject: [PATCH] Automated deployment to update containers 2023-09-21 --- .../biocontainers/dbcanlight/container.yaml | 19 ++++ quay.io/biocontainers/haplink/container.yaml | 98 +++++++++++++++++++ quay.io/biocontainers/hifieval/container.yaml | 16 +++ .../biocontainers/marker-magu/container.yaml | 44 +++++++++ .../biocontainers/pixelator/container.yaml | 72 ++++++++++++++ quay.io/biocontainers/solote/container.yaml | 37 +++++++ .../biocontainers/transannot/container.yaml | 16 +++ 7 files changed, 302 insertions(+) create mode 100644 quay.io/biocontainers/dbcanlight/container.yaml create mode 100644 quay.io/biocontainers/haplink/container.yaml create mode 100644 quay.io/biocontainers/hifieval/container.yaml create mode 100644 quay.io/biocontainers/marker-magu/container.yaml create mode 100644 quay.io/biocontainers/pixelator/container.yaml create mode 100644 quay.io/biocontainers/solote/container.yaml create mode 100644 quay.io/biocontainers/transannot/container.yaml diff --git a/quay.io/biocontainers/dbcanlight/container.yaml b/quay.io/biocontainers/dbcanlight/container.yaml new file mode 100644 index 0000000000000..a449390055407 --- /dev/null +++ b/quay.io/biocontainers/dbcanlight/container.yaml @@ -0,0 +1,19 @@ +url: https://biocontainers.pro/tools/dbcanlight +maintainer: '@vsoch' +description: singularity registry hpc automated addition for dbcanlight +latest: + 1.0.0--pyh7cba7a3_0: sha256:8cc910f8687f27de48da644fefeaa80c0be5355a1885c47ca8a90ac6fc40aa18 +tags: + 1.0.0--pyh7cba7a3_0: sha256:8cc910f8687f27de48da644fefeaa80c0be5355a1885c47ca8a90ac6fc40aa18 +docker: quay.io/biocontainers/dbcanlight +aliases: + dbcanLight: /usr/local/bin/dbcanLight + dbcanLight-hmmparser: /usr/local/bin/dbcanLight-hmmparser + dbcanLight-subparser: /usr/local/bin/dbcanLight-subparser + f2py3.10: /usr/local/bin/f2py3.10 + 2to3-3.10: /usr/local/bin/2to3-3.10 + idle3.10: /usr/local/bin/idle3.10 + pydoc3.10: /usr/local/bin/pydoc3.10 + python3.10: /usr/local/bin/python3.10 + python3.10-config: /usr/local/bin/python3.10-config + python3.1: /usr/local/bin/python3.1 diff --git a/quay.io/biocontainers/haplink/container.yaml b/quay.io/biocontainers/haplink/container.yaml new file mode 100644 index 0000000000000..064e319e79bb0 --- /dev/null +++ b/quay.io/biocontainers/haplink/container.yaml @@ -0,0 +1,98 @@ +url: https://biocontainers.pro/tools/haplink +maintainer: '@vsoch' +description: singularity registry hpc automated addition for haplink +latest: + 1.0.0--h031d066_0: sha256:24be64f759b16a0417604d173ab828ac7d555ac4fdf95788676ee8ebe4525300 +tags: + 1.0.0--h031d066_0: sha256:24be64f759b16a0417604d173ab828ac7d555ac4fdf95788676ee8ebe4525300 +docker: quay.io/biocontainers/haplink +aliases: + 7z: /usr/local/bin/7z + 7za: /usr/local/bin/7za + 7zr: /usr/local/bin/7zr + git2: /usr/local/bin/git2 + haplink: /usr/local/bin/haplink + julia: /usr/local/bin/julia + mbedtls_aead_demo: /usr/local/bin/mbedtls_aead_demo + mbedtls_benchmark: /usr/local/bin/mbedtls_benchmark + mbedtls_cert_app: /usr/local/bin/mbedtls_cert_app + mbedtls_cert_req: /usr/local/bin/mbedtls_cert_req + mbedtls_cert_write: /usr/local/bin/mbedtls_cert_write + mbedtls_cipher_aead_demo: /usr/local/bin/mbedtls_cipher_aead_demo + mbedtls_crl_app: /usr/local/bin/mbedtls_crl_app + mbedtls_crypt_and_hash: /usr/local/bin/mbedtls_crypt_and_hash + mbedtls_crypto_examples: /usr/local/bin/mbedtls_crypto_examples + mbedtls_dh_client: /usr/local/bin/mbedtls_dh_client + mbedtls_dh_genprime: /usr/local/bin/mbedtls_dh_genprime + mbedtls_dh_server: /usr/local/bin/mbedtls_dh_server + mbedtls_dtls_client: /usr/local/bin/mbedtls_dtls_client + mbedtls_dtls_server: /usr/local/bin/mbedtls_dtls_server + mbedtls_ecdh_curve25519: /usr/local/bin/mbedtls_ecdh_curve25519 + mbedtls_ecdsa: /usr/local/bin/mbedtls_ecdsa + mbedtls_gen_entropy: /usr/local/bin/mbedtls_gen_entropy + mbedtls_gen_key: /usr/local/bin/mbedtls_gen_key + mbedtls_gen_random_ctr_drbg: /usr/local/bin/mbedtls_gen_random_ctr_drbg + mbedtls_generic_sum: /usr/local/bin/mbedtls_generic_sum + mbedtls_hello: /usr/local/bin/mbedtls_hello + mbedtls_hmac_demo: /usr/local/bin/mbedtls_hmac_demo + mbedtls_key_app: /usr/local/bin/mbedtls_key_app + mbedtls_key_app_writer: /usr/local/bin/mbedtls_key_app_writer + mbedtls_key_ladder_demo: /usr/local/bin/mbedtls_key_ladder_demo + mbedtls_key_ladder_demo.sh: /usr/local/bin/mbedtls_key_ladder_demo.sh + mbedtls_load_roots: /usr/local/bin/mbedtls_load_roots + mbedtls_md_hmac_demo: /usr/local/bin/mbedtls_md_hmac_demo + mbedtls_mini_client: /usr/local/bin/mbedtls_mini_client + mbedtls_mpi_demo: /usr/local/bin/mbedtls_mpi_demo + mbedtls_pem2der: /usr/local/bin/mbedtls_pem2der + mbedtls_pk_decrypt: /usr/local/bin/mbedtls_pk_decrypt + mbedtls_pk_encrypt: /usr/local/bin/mbedtls_pk_encrypt + mbedtls_pk_sign: /usr/local/bin/mbedtls_pk_sign + mbedtls_pk_verify: /usr/local/bin/mbedtls_pk_verify + mbedtls_psa_constant_names: /usr/local/bin/mbedtls_psa_constant_names + mbedtls_query_compile_time_config: /usr/local/bin/mbedtls_query_compile_time_config + mbedtls_req_app: /usr/local/bin/mbedtls_req_app + mbedtls_rsa_decrypt: /usr/local/bin/mbedtls_rsa_decrypt + mbedtls_rsa_encrypt: /usr/local/bin/mbedtls_rsa_encrypt + mbedtls_rsa_genkey: /usr/local/bin/mbedtls_rsa_genkey + mbedtls_rsa_sign: /usr/local/bin/mbedtls_rsa_sign + mbedtls_rsa_sign_pss: /usr/local/bin/mbedtls_rsa_sign_pss + mbedtls_rsa_verify: /usr/local/bin/mbedtls_rsa_verify + mbedtls_rsa_verify_pss: /usr/local/bin/mbedtls_rsa_verify_pss + mbedtls_selftest: /usr/local/bin/mbedtls_selftest + mbedtls_ssl_client1: /usr/local/bin/mbedtls_ssl_client1 + mbedtls_ssl_client2: /usr/local/bin/mbedtls_ssl_client2 + mbedtls_ssl_context_info: /usr/local/bin/mbedtls_ssl_context_info + mbedtls_ssl_fork_server: /usr/local/bin/mbedtls_ssl_fork_server + mbedtls_ssl_mail_client: /usr/local/bin/mbedtls_ssl_mail_client + mbedtls_ssl_pthread_server: /usr/local/bin/mbedtls_ssl_pthread_server + mbedtls_ssl_server: /usr/local/bin/mbedtls_ssl_server + mbedtls_ssl_server2: /usr/local/bin/mbedtls_ssl_server2 + mbedtls_strerror: /usr/local/bin/mbedtls_strerror + mbedtls_udp_proxy: /usr/local/bin/mbedtls_udp_proxy + mbedtls_zeroize: /usr/local/bin/mbedtls_zeroize + scalar: /usr/local/bin/scalar + git: /usr/local/bin/git + git-cvsserver: /usr/local/bin/git-cvsserver + git-receive-pack: /usr/local/bin/git-receive-pack + git-shell: /usr/local/bin/git-shell + git-upload-archive: /usr/local/bin/git-upload-archive + git-upload-pack: /usr/local/bin/git-upload-pack + gitk: /usr/local/bin/gitk + hwloc-gather-cpuid: /usr/local/bin/hwloc-gather-cpuid + hwloc-annotate: /usr/local/bin/hwloc-annotate + hwloc-bind: /usr/local/bin/hwloc-bind + hwloc-calc: /usr/local/bin/hwloc-calc + hwloc-compress-dir: /usr/local/bin/hwloc-compress-dir + hwloc-diff: /usr/local/bin/hwloc-diff + hwloc-distrib: /usr/local/bin/hwloc-distrib + hwloc-gather-topology: /usr/local/bin/hwloc-gather-topology + hwloc-info: /usr/local/bin/hwloc-info + hwloc-ls: /usr/local/bin/hwloc-ls + hwloc-patch: /usr/local/bin/hwloc-patch + hwloc-ps: /usr/local/bin/hwloc-ps + lstopo: /usr/local/bin/lstopo + lstopo-no-graphics: /usr/local/bin/lstopo-no-graphics + cmpfillin: /usr/local/bin/cmpfillin + gpmetis: /usr/local/bin/gpmetis + graphchk: /usr/local/bin/graphchk + m2gmetis: /usr/local/bin/m2gmetis diff --git a/quay.io/biocontainers/hifieval/container.yaml b/quay.io/biocontainers/hifieval/container.yaml new file mode 100644 index 0000000000000..8a4b9193cd266 --- /dev/null +++ b/quay.io/biocontainers/hifieval/container.yaml @@ -0,0 +1,16 @@ +url: https://biocontainers.pro/tools/hifieval +maintainer: '@vsoch' +description: singularity registry hpc automated addition for hifieval +latest: + 0.4.0--pyh7cba7a3_0: sha256:e7b8d120ffb31cf51cc71a3f240e77e4519e682684c24d1f469e4224cae459fa +tags: + 0.4.0--pyh7cba7a3_0: sha256:e7b8d120ffb31cf51cc71a3f240e77e4519e682684c24d1f469e4224cae459fa +docker: quay.io/biocontainers/hifieval +aliases: + hifieval.py: /usr/local/bin/hifieval.py + 2to3-3.11: /usr/local/bin/2to3-3.11 + idle3.11: /usr/local/bin/idle3.11 + pydoc3.11: /usr/local/bin/pydoc3.11 + python3.11: /usr/local/bin/python3.11 + python3.11-config: /usr/local/bin/python3.11-config + python3.1: /usr/local/bin/python3.1 diff --git a/quay.io/biocontainers/marker-magu/container.yaml b/quay.io/biocontainers/marker-magu/container.yaml new file mode 100644 index 0000000000000..906a623601ba1 --- /dev/null +++ b/quay.io/biocontainers/marker-magu/container.yaml @@ -0,0 +1,44 @@ +url: https://biocontainers.pro/tools/marker-magu +maintainer: '@vsoch' +description: singularity registry hpc automated addition for marker-magu +latest: + 0.4.0--pyhdfd78af_0: sha256:6fe592fa89def299c3c0cfc83f68f73ae4a240cdb61f536737aa873797359086 +tags: + 0.4.0--pyhdfd78af_0: sha256:6fe592fa89def299c3c0cfc83f68f73ae4a240cdb61f536737aa873797359086 +docker: quay.io/biocontainers/marker-magu +aliases: + bwa-mem2: /usr/local/bin/bwa-mem2 + bwa-mem2.avx: /usr/local/bin/bwa-mem2.avx + bwa-mem2.avx2: /usr/local/bin/bwa-mem2.avx2 + bwa-mem2.avx512bw: /usr/local/bin/bwa-mem2.avx512bw + bwa-mem2.sse41: /usr/local/bin/bwa-mem2.sse41 + bwa-mem2.sse42: /usr/local/bin/bwa-mem2.sse42 + coverm: /usr/local/bin/coverm + dashing: /usr/local/bin/dashing + markermagu: /usr/local/bin/markermagu + remove_minimap2_duplicated_headers: /usr/local/bin/remove_minimap2_duplicated_headers + starcode: /usr/local/bin/starcode + fastANI: /usr/local/bin/fastANI + seqkit: /usr/local/bin/seqkit + fastp: /usr/local/bin/fastp + igzip: /usr/local/bin/igzip + basenc: /usr/local/bin/basenc + b2sum: /usr/local/bin/b2sum + ls: /usr/local/bin/ls + base32: /usr/local/bin/base32 + base64: /usr/local/bin/base64 + basename: /usr/local/bin/basename + cat: /usr/local/bin/cat + chcon: /usr/local/bin/chcon + chgrp: /usr/local/bin/chgrp + chmod: /usr/local/bin/chmod + chown: /usr/local/bin/chown + chroot: /usr/local/bin/chroot + cksum: /usr/local/bin/cksum + comm: /usr/local/bin/comm + cp: /usr/local/bin/cp + csplit: /usr/local/bin/csplit + cut: /usr/local/bin/cut + date: /usr/local/bin/date + dd: /usr/local/bin/dd + df: /usr/local/bin/df diff --git a/quay.io/biocontainers/pixelator/container.yaml b/quay.io/biocontainers/pixelator/container.yaml new file mode 100644 index 0000000000000..f37f1baed4141 --- /dev/null +++ b/quay.io/biocontainers/pixelator/container.yaml @@ -0,0 +1,72 @@ +url: https://biocontainers.pro/tools/pixelator +maintainer: '@vsoch' +description: singularity registry hpc automated addition for pixelator +latest: + 0.13.1--pyh7cba7a3_0: sha256:e8d8f66592293d1c4d3ca771cc038f0370bc572dfb3292880d294ede10b573ab +tags: + 0.13.1--pyh7cba7a3_0: sha256:e8d8f66592293d1c4d3ca771cc038f0370bc572dfb3292880d294ede10b573ab +docker: quay.io/biocontainers/pixelator +aliases: + cmtime: /usr/local/bin/cmtime + elastipubsub5: /usr/local/bin/elastipubsub5 + h5fuse.sh: /usr/local/bin/h5fuse.sh + ib_acme: /usr/local/bin/ib_acme + ibv_asyncwatch: /usr/local/bin/ibv_asyncwatch + ibv_devices: /usr/local/bin/ibv_devices + ibv_devinfo: /usr/local/bin/ibv_devinfo + ibv_rc_pingpong: /usr/local/bin/ibv_rc_pingpong + ibv_srq_pingpong: /usr/local/bin/ibv_srq_pingpong + ibv_uc_pingpong: /usr/local/bin/ibv_uc_pingpong + ibv_ud_pingpong: /usr/local/bin/ibv_ud_pingpong + ibv_xsrq_pingpong: /usr/local/bin/ibv_xsrq_pingpong + io_demo: /usr/local/bin/io_demo + mckey: /usr/local/bin/mckey + mqtt5_app: /usr/local/bin/mqtt5_app + mqtt5_canary: /usr/local/bin/mqtt5_canary + mqtt5canary: /usr/local/bin/mqtt5canary + pixelator: /usr/local/bin/pixelator + protoc-23.4.0: /usr/local/bin/protoc-23.4.0 + pysemver: /usr/local/bin/pysemver + rcopy: /usr/local/bin/rcopy + rdma_client: /usr/local/bin/rdma_client + rdma_server: /usr/local/bin/rdma_server + rdma_xclient: /usr/local/bin/rdma_xclient + rdma_xserver: /usr/local/bin/rdma_xserver + riostream: /usr/local/bin/riostream + rping: /usr/local/bin/rping + rstream: /usr/local/bin/rstream + ucmatose: /usr/local/bin/ucmatose + ucx_info: /usr/local/bin/ucx_info + ucx_perftest: /usr/local/bin/ucx_perftest + ucx_read_profile: /usr/local/bin/ucx_read_profile + udaddy: /usr/local/bin/udaddy + udpong: /usr/local/bin/udpong + umi_tools: /usr/local/bin/umi_tools + yapf: /usr/local/bin/yapf + yapf-diff: /usr/local/bin/yapf-diff + yappi: /usr/local/bin/yappi + produce_x_platform_fuzz_corpus: /usr/local/bin/produce_x_platform_fuzz_corpus + run_x_platform_fuzz_corpus: /usr/local/bin/run_x_platform_fuzz_corpus + pyfastx: /usr/local/bin/pyfastx + elasticurl: /usr/local/bin/elasticurl + elasticurl_cpp: /usr/local/bin/elasticurl_cpp + elastipubsub: /usr/local/bin/elastipubsub + csv-import: /usr/local/bin/csv-import + orc-memory: /usr/local/bin/orc-memory + orc-scan: /usr/local/bin/orc-scan + timezone-dump: /usr/local/bin/timezone-dump + fastp: /usr/local/bin/fastp + h5delete: /usr/local/bin/h5delete + orc-contents: /usr/local/bin/orc-contents + orc-metadata: /usr/local/bin/orc-metadata + orc-statistics: /usr/local/bin/orc-statistics + sha256_profile: /usr/local/bin/sha256_profile + igraph: /usr/local/bin/igraph + scanpy: /usr/local/bin/scanpy + cutadapt: /usr/local/bin/cutadapt + gflags_completions.sh: /usr/local/bin/gflags_completions.sh + hwloc-gather-cpuid: /usr/local/bin/hwloc-gather-cpuid + hwloc-annotate: /usr/local/bin/hwloc-annotate + hwloc-bind: /usr/local/bin/hwloc-bind + hwloc-calc: /usr/local/bin/hwloc-calc + hwloc-compress-dir: /usr/local/bin/hwloc-compress-dir diff --git a/quay.io/biocontainers/solote/container.yaml b/quay.io/biocontainers/solote/container.yaml new file mode 100644 index 0000000000000..e1f493c6495ca --- /dev/null +++ b/quay.io/biocontainers/solote/container.yaml @@ -0,0 +1,37 @@ +url: https://biocontainers.pro/tools/solote +maintainer: '@vsoch' +description: singularity registry hpc automated addition for solote +latest: + 1.09--hdfd78af_0: sha256:383fe3287fb7b3681c3c1d5959197cebe435801dce42c844ecacb9da58c043ce +tags: + 1.09--hdfd78af_0: sha256:383fe3287fb7b3681c3c1d5959197cebe435801dce42c844ecacb9da58c043ce +docker: quay.io/biocontainers/solote +aliases: + SoloTE_RepeatMasker_to_BED.py: /usr/local/bin/SoloTE_RepeatMasker_to_BED.py + SoloTE_pipeline.py: /usr/local/bin/SoloTE_pipeline.py + annotateBAM.py: /usr/local/bin/annotateBAM.py + hb-info: /usr/local/bin/hb-info + tjbench: /usr/local/bin/tjbench + shiftBed: /usr/local/bin/shiftBed + annotateBed: /usr/local/bin/annotateBed + bamToBed: /usr/local/bin/bamToBed + bamToFastq: /usr/local/bin/bamToFastq + bed12ToBed6: /usr/local/bin/bed12ToBed6 + bedToBam: /usr/local/bin/bedToBam + bedToIgv: /usr/local/bin/bedToIgv + bedpeToBam: /usr/local/bin/bedpeToBam + bedtools: /usr/local/bin/bedtools + closestBed: /usr/local/bin/closestBed + clusterBed: /usr/local/bin/clusterBed + complementBed: /usr/local/bin/complementBed + coverageBed: /usr/local/bin/coverageBed + expandCols: /usr/local/bin/expandCols + fastaFromBed: /usr/local/bin/fastaFromBed + flankBed: /usr/local/bin/flankBed + genomeCoverageBed: /usr/local/bin/genomeCoverageBed + getOverlap: /usr/local/bin/getOverlap + groupBy: /usr/local/bin/groupBy + intersectBed: /usr/local/bin/intersectBed + linksBed: /usr/local/bin/linksBed + mapBed: /usr/local/bin/mapBed + maskFastaFromBed: /usr/local/bin/maskFastaFromBed diff --git a/quay.io/biocontainers/transannot/container.yaml b/quay.io/biocontainers/transannot/container.yaml new file mode 100644 index 0000000000000..b9ece14ac4d48 --- /dev/null +++ b/quay.io/biocontainers/transannot/container.yaml @@ -0,0 +1,16 @@ +url: https://biocontainers.pro/tools/transannot +maintainer: '@vsoch' +description: singularity registry hpc automated addition for transannot +latest: + 1.fa9ebab--pl5321h6a68c12_0: sha256:4e32c47c5372096271de24bf9e49904dd63b7ca3adaeaaa908ed72f3f1e78b51 +tags: + 1.fa9ebab--pl5321h6a68c12_0: sha256:4e32c47c5372096271de24bf9e49904dd63b7ca3adaeaaa908ed72f3f1e78b51 +docker: quay.io/biocontainers/transannot +aliases: + transannot: /usr/local/bin/transannot + aria2c: /usr/local/bin/aria2c + gawk-5.1.0: /usr/local/bin/gawk-5.1.0 + awk: /usr/local/bin/awk + gawk: /usr/local/bin/gawk + idn2: /usr/local/bin/idn2 + wget: /usr/local/bin/wget