diff --git a/quay.io/biocontainers/gtdbtk/container.yaml b/quay.io/biocontainers/gtdbtk/container.yaml
index df9982c40e5f8..c27a4e5f7ef55 100644
--- a/quay.io/biocontainers/gtdbtk/container.yaml
+++ b/quay.io/biocontainers/gtdbtk/container.yaml
@@ -2,9 +2,10 @@ url: https://biocontainers.pro/tools/gtdbtk
 maintainer: '@vsoch'
 description: shpc-registry automated BioContainers addition for gtdbtk
 latest:
-  2.1.1--pyhdfd78af_1: sha256:8a3f3b4416fb8c01f7c3c73cb05309c6b85d81a9028f8db8f9ef783e72c63bcb
+  2.2.4--pyhdfd78af_0: sha256:d764fd7c96a5432ba0cd6f0a26f95eded43bf4ede59f9d07ddd2e8b9c5b1e33a
 tags:
   2.1.1--pyhdfd78af_1: sha256:8a3f3b4416fb8c01f7c3c73cb05309c6b85d81a9028f8db8f9ef783e72c63bcb
+  2.2.4--pyhdfd78af_0: sha256:d764fd7c96a5432ba0cd6f0a26f95eded43bf4ede59f9d07ddd2e8b9c5b1e33a
 docker: quay.io/biocontainers/gtdbtk
 aliases:
   download-db.sh: /usr/local/bin/download-db.sh
diff --git a/quay.io/biocontainers/mhcnuggets/container.yaml b/quay.io/biocontainers/mhcnuggets/container.yaml
index 3081d1383cc4b..13e62b8deabe0 100644
--- a/quay.io/biocontainers/mhcnuggets/container.yaml
+++ b/quay.io/biocontainers/mhcnuggets/container.yaml
@@ -2,9 +2,10 @@ url: https://biocontainers.pro/tools/mhcnuggets
 maintainer: '@vsoch'
 description: shpc-registry automated BioContainers addition for mhcnuggets
 latest:
-  2.3.2--py_0: sha256:246708b68739fde7d0a6a0ec09e5dc0e9164fff14c1dc634b2e454ea3aca8222
+  2.4.0--pyh7cba7a3_0: sha256:b341b45d109a00f849d02b5fe1dbbbbd32b153f63223b84492e1b3f419554bb1
 tags:
   2.3.2--py_0: sha256:246708b68739fde7d0a6a0ec09e5dc0e9164fff14c1dc634b2e454ea3aca8222
+  2.4.0--pyh7cba7a3_0: sha256:b341b45d109a00f849d02b5fe1dbbbbd32b153f63223b84492e1b3f419554bb1
 docker: quay.io/biocontainers/mhcnuggets
 aliases:
   theano-cache: /usr/local/bin/theano-cache
diff --git a/quay.io/biocontainers/r-acidgenomes/container.yaml b/quay.io/biocontainers/r-acidgenomes/container.yaml
index edb7bb2a19ed2..5c63e428240e5 100644
--- a/quay.io/biocontainers/r-acidgenomes/container.yaml
+++ b/quay.io/biocontainers/r-acidgenomes/container.yaml
@@ -2,9 +2,10 @@ url: https://biocontainers.pro/tools/r-acidgenomes
 maintainer: '@vsoch'
 description: shpc-registry automated BioContainers addition for r-acidgenomes
 latest:
-  0.4.5--r42hdfd78af_0: sha256:017b7ee4b11748dfa04810aaf5f387d419178917dc08a31e0deeefd6ff77da6e
+  0.4.8--r42hdfd78af_0: sha256:9fd12fd8ffbe7f4e6b343f44c8073dc53fa0115a6116e34ca80adeed91337827
 tags:
   0.3.0--r41hdfd78af_0: sha256:44d5d46dc2e579e3443a74aacca29eb700f3168cb05513863d84f7307eaea512
   0.4.4--r42hdfd78af_1: sha256:e84f7017a7be9372600a058cb8b85b3ac4817b104b962827aff805ecf0a50012
   0.4.5--r42hdfd78af_0: sha256:017b7ee4b11748dfa04810aaf5f387d419178917dc08a31e0deeefd6ff77da6e
+  0.4.8--r42hdfd78af_0: sha256:9fd12fd8ffbe7f4e6b343f44c8073dc53fa0115a6116e34ca80adeed91337827
 docker: quay.io/biocontainers/r-acidgenomes