diff --git a/counts.json b/counts.json index 4962a63..bc0e35d 100644 --- a/counts.json +++ b/counts.json @@ -2326,10 +2326,10 @@ "2csfastq_1csfastq": 1, "2ft": 2, "2ndscore": 1, - "2to3": 3630, + "2to3": 3631, "2to3-3.10": 802, "2to3-3.11": 264, - "2to3-3.12": 174, + "2to3-3.12": 175, "2to3-3.4": 6, "2to3-3.5": 103, "2to3-3.6": 342, @@ -3263,8 +3263,8 @@ "Joiner": 2, "JolyTree.sh": 1, "Juicebox_KR_normalization.sh": 1, - "JxrDecApp": 21, - "JxrEncApp": 21, + "JxrDecApp": 22, + "JxrEncApp": 22, "KAligner": 17, "KEGGCharter_prokaryotic_maps.txt": 2, "KPopCount": 1, @@ -4352,8 +4352,8 @@ "SvFilterAnnotations": 1, "SvPrep": 1, "SvmTheoreticalSpectrumGeneratorTrainer": 2, - "SvtAv1DecApp": 10, - "SvtAv1EncApp": 10, + "SvtAv1DecApp": 11, + "SvtAv1EncApp": 11, "Sweave": 1, "SweepFinder2": 1, "SymmetryTester": 2, @@ -5002,7 +5002,7 @@ "addtit.pl": 2, "adf_checker.pl": 1, "adhocfilelist": 1, - "adig": 4492, + "adig": 4493, "adjustPeakFile.pl": 5, "adjustRedunGroupFile.pl": 5, "adjustScanRankerScoreByGroup": 2, @@ -5118,7 +5118,7 @@ "agrvate": 1, "agtsampleinforw.dll": 2, "ahmm-s": 1, - "ahost": 4492, + "ahost": 4493, "airr-tools": 5, "akita_data.py": 1, "akita_data_read.py": 1, @@ -5358,6 +5358,7 @@ "anchorwave_sse2": 1, "anchorwave_sse4.1": 1, "andi": 1, + "androiddeployqt6": 1, "anglerfish": 1, "angsd": 1, "animate": 75, @@ -5612,8 +5613,8 @@ "anvi-upgrade": 2, "any2fasta": 20, "aodp": 1, - "aomdec": 18, - "aomenc": 18, + "aomdec": 19, + "aomenc": 19, "api_binding_site": 1, "apirst2html.py": 1, "aplanat": 2, @@ -5782,7 +5783,7 @@ "ase-gui": 3, "ase-info": 3, "ase-run": 3, - "aserver": 430, + "aserver": 431, "asession": 3, "asgal": 1, "asgal_BitVector.py": 1, @@ -5802,9 +5803,9 @@ "asmQC2": 2, "asmToAGP.pl": 3, "asm_collect.py": 1, - "asn1Coding": 6, - "asn1Decoding": 6, - "asn1Parser": 6, + "asn1Coding": 7, + "asn1Decoding": 7, + "asn1Parser": 7, "asn2ff": 1, "asn2gb": 2, "asn2idx": 1, @@ -5845,6 +5846,7 @@ "assign_taxonomy_by_blast_result.py": 1, "assistant": 245, "assistant-qt4": 3, + "assistant6": 1, "astalavista": 1, "astats": 2, "asterisk": 1, @@ -5864,7 +5866,7 @@ "atropos": 2, "atst": 2, "attotree": 1, - "attr": 39, + "attr": 40, "augment-bam": 1, "augur": 1, "augustify.py": 9, @@ -5911,7 +5913,7 @@ "autometa-taxonomy-majority-vote": 2, "autometa-unclustered-recruitment": 2, "autometa-update-databases": 2, - "autopoint": 5274, + "autopoint": 5275, "autoreconf.bak": 10, "autoscan.bak": 10, "autoupdate.bak": 10, @@ -6789,7 +6791,7 @@ "bogusness": 3, "bohra": 1, "boink": 1, - "bokeh": 64, + "bokeh": 65, "bold2utax.py": 1, "bold_identification": 1, "bolt": 2, @@ -6989,7 +6991,7 @@ "broad_utils.py": 1, "brockman_pipeline": 1, "brooklyn_plot": 1, - "brotli": 411, + "brotli": 412, "browse": 18, "bs_call": 2, "bs_seeker2-align.py": 1, @@ -7086,7 +7088,7 @@ "bundlelinks": 1, "bundler": 19, "bunwarpj": 4, - "bunzip2": 6580, + "bunzip2": 6581, "burden_test_vase": 1, "burst_linux_DB12": 1, "burst_linux_DB15": 1, @@ -7137,16 +7139,16 @@ "bxStats.py": 1, "bxcl_seqqc": 1, "bxtools": 1, - "bzcat": 6580, - "bzcmp": 6580, - "bzdiff": 6580, - "bzegrep": 6580, - "bzfgrep": 6580, - "bzgrep": 6580, - "bzip2": 6580, - "bzip2recover": 6580, - "bzless": 6580, - "bzmore": 6580, + "bzcat": 6581, + "bzcmp": 6581, + "bzdiff": 6581, + "bzegrep": 6581, + "bzfgrep": 6581, + "bzgrep": 6581, + "bzip2": 6581, + "bzip2recover": 6581, + "bzless": 6581, + "bzmore": 6581, "c++": 5, "c++filt": 8, "c-index-test": 8, @@ -7163,7 +7165,7 @@ "cPecanLibTests": 1, "cPecanModifyHmm": 1, "cPecanRealign": 1, - "c_rehash": 7732, + "c_rehash": 7733, "ca2ace.pl": 3, "ca2ctg": 2, "ca2mates": 2, @@ -7237,7 +7239,7 @@ "cage-classify.py": 1, "cagee": 1, "cai": 25, - "cairo-trace": 5105, + "cairo-trace": 5106, "cairosvg": 6, "cal": 13, "calD": 1, @@ -7339,7 +7341,7 @@ "capnpc-c++": 53, "capnpc-capnp": 53, "capnpc-cython": 1, - "captoinfo": 7663, + "captoinfo": 7664, "captus_assembly": 1, "caqc.pl": 3, "caqc_help.ini": 3, @@ -7428,7 +7430,7 @@ "cbc": 99, "cbi": 1, "cblaster": 1, - "cbrunsli": 21, + "cbrunsli": 22, "cc": 5, "cc.bin": 2, "ccache-swig": 13, @@ -7492,6 +7494,7 @@ "celery": 4, "cell_types_utils.R": 1, "cellbender": 1, + "cellpose": 1, "cellqc": 1, "cellsnake": 1, "cellsnp-lite": 1, @@ -7530,7 +7533,7 @@ "cert-sync": 15, "cert2spc": 15, "certmgr": 15, - "certtool": 30, + "certtool": 31, "certutil": 167, "cesar": 1, "cestat-cov": 2, @@ -7775,7 +7778,7 @@ "cit2pmid": 13, "civicpy": 1, "cjk-gs-integrate": 1, - "cjpeg": 5739, + "cjpeg": 5740, "ckeygen": 1, "cksum": 82, "claMLST": 1, @@ -7881,7 +7884,7 @@ "cleanup-coverage.py": 2, "cleanup-stale-gcp-resources.py": 1, "cleanup.py": 1, - "clear": 7663, + "clear": 7664, "clearCNV": 1, "clearcut": 1, "cleric": 1, @@ -7909,6 +7912,7 @@ "clique": 10, "cliquesnv": 1, "clk": 2, + "cllayerinfo": 1, "clm": 24, "clmformat": 23, "clog2_join": 1, @@ -8235,7 +8239,7 @@ "compileSpliceCands": 12, "compile_STARE_Linux.sh": 1, "compile_STARE_macOS.sh": 1, - "compile_et": 5774, + "compile_et": 5775, "compiled_table.py": 1, "compleasm": 1, "complementBed": 269, @@ -8406,11 +8410,11 @@ "conv-template": 17, "convbkmk": 1, "convert": 76, - "convert-caffe2-to-onnx": 41, + "convert-caffe2-to-onnx": 42, "convert-ccds-to-bed": 3, "convert-fasta-to-v2.pl": 3, "convert-mirdeep2-fasta.py": 1, - "convert-onnx-to-caffe2": 41, + "convert-onnx-to-caffe2": 42, "convert-readcount-file.py": 1, "convert-regions": 2, "convert-sam-for-rsem": 1, @@ -8826,7 +8830,7 @@ "cstacks": 1, "cstag": 1, "cstranslate": 4, - "csv-import": 53, + "csv-import": 54, "csv2kml": 1, "csv2rdf": 32, "csv2tsv": 1, @@ -8871,14 +8875,14 @@ "cuffquant": 2, "cuppa": 1, "cuppa-chart": 1, - "cups-config": 186, + "cups-config": 187, "curare": 1, "curare_wizard": 1, "curate_database.py": 1, "curate_universe": 1, "curesim": 2, "curl": 5091, - "curl-config": 5890, + "curl-config": 5891, "curlywhirly": 1, "curve_keygen": 68, "cusp": 24, @@ -8993,16 +8997,16 @@ "dash-generate-components": 13, "dash-update-components": 5, "dashing": 7, - "dask": 18, + "dask": 19, "dask scheduler": 1, "dask ssh": 1, "dask worker": 1, "dask-mpi": 4, "dask-remote": 5, - "dask-scheduler": 44, - "dask-ssh": 44, + "dask-scheduler": 45, + "dask-ssh": 45, "dask-submit": 5, - "dask-worker": 44, + "dask-worker": 45, "dask_utils.py": 1, "data.py": 1, "data_filter": 1, @@ -9031,7 +9035,7 @@ "date": 82, "datma.py": 1, "datma_seq.py": 1, - "dav1d": 12, + "dav1d": 13, "davix-cp": 1, "davix-get": 1, "davix-http": 1, @@ -9081,20 +9085,20 @@ "dbkit_create.py": 1, "dbkit_extract.py": 1, "dbkit_merge.py": 1, - "dbrunsli": 21, + "dbrunsli": 22, "dbscan": 1, "dbsnp_iit": 11, "dbtell": 24, - "dbus-cleanup-sockets": 248, - "dbus-daemon": 248, + "dbus-cleanup-sockets": 249, + "dbus-daemon": 249, "dbus-daemon-launch-helper": 1, - "dbus-launch": 248, - "dbus-monitor": 248, - "dbus-run-session": 248, - "dbus-send": 248, - "dbus-test-tool": 248, - "dbus-update-activation-environment": 248, - "dbus-uuidgen": 248, + "dbus-launch": 249, + "dbus-monitor": 249, + "dbus-run-session": 249, + "dbus-send": 249, + "dbus-test-tool": 249, + "dbus-update-activation-environment": 249, + "dbus-uuidgen": 249, "dbxcompress": 24, "dbxedam": 24, "dbxfasta": 24, @@ -9315,7 +9319,7 @@ "depth_calc.py": 1, "depth_estim_from_vcf.sh": 1, "depythontex": 1, - "derb": 5800, + "derb": 5801, "derep_stuff.py": 1, "deripcal": 1, "derna": 1, @@ -9342,6 +9346,7 @@ "design_naively.py": 2, "designer": 245, "designer-qt4": 3, + "designer6": 1, "desman": 1, "desmanflow.nf": 1, "detectChimera": 3, @@ -9478,7 +9483,7 @@ "django-admin": 4, "django-admin.py": 3, "django-admin.pyc": 1, - "djpeg": 5739, + "djpeg": 5740, "dkfzbiasfilter.py": 1, "dkfzbiasfilter_summarize.py": 1, "dlcoal_to_dlcpar": 1, @@ -9814,7 +9819,7 @@ "dumpmates": 2, "dumppdf.py": 1, "dumpreads": 2, - "dumpsexp": 29, + "dumpsexp": 30, "dumpsolv": 23, "dunamai": 12, "dunovo.py": 1, @@ -9994,10 +9999,10 @@ "elandresult2bed": 1, "elastic-blast": 1, "elasticluster": 1, - "elasticurl": 45, - "elasticurl_cpp": 45, - "elastipubsub": 45, - "elastipubsub5": 34, + "elasticurl": 46, + "elasticurl_cpp": 46, + "elastipubsub": 46, + "elastipubsub5": 35, "elb-cost.py": 1, "elbadmin": 29, "elector": 1, @@ -10074,7 +10079,7 @@ "enumall": 1, "enumerate_paths.py": 1, "env": 82, - "env-execute": 6827, + "env-execute": 6828, "env.yml": 1, "env_parallel": 99, "env_parallel.ash": 99, @@ -10091,7 +10096,7 @@ "environment.yml": 1, "envpath": 3, "envset.cmd": 1, - "envsubst": 5274, + "envsubst": 5275, "eoulsan.sh": 1, "epa-ng": 4, "epestfind": 24, @@ -10313,6 +10318,15 @@ "expressionFromGenomicSet.py": 1, "exprop": 1, "exprop64": 1, + "exr2aces": 1, + "exrenvmap": 1, + "exrheader": 1, + "exrinfo": 1, + "exrmakepreview": 1, + "exrmaketiled": 1, + "exrmultipart": 1, + "exrmultiview": 1, + "exrstdattr": 1, "ext_corr.py": 1, "extcheck": 112, "extend.py": 3, @@ -10455,7 +10469,7 @@ "ezez4makefile_v4.pl": 1, "ezez4qsub_vx1.pl": 1, "ezez_vx1.pl": 1, - "f2py": 2027, + "f2py": 2028, "f2py2": 135, "f2py2.7": 135, "f2py3": 1591, @@ -10908,15 +10922,15 @@ "fax2tiff": 5293, "fba": 1, "fc": 1, - "fc-cache": 5304, - "fc-cat": 5304, - "fc-conflist": 4821, - "fc-list": 5304, - "fc-match": 5304, - "fc-pattern": 5304, - "fc-query": 5304, - "fc-scan": 5304, - "fc-validate": 5304, + "fc-cache": 5305, + "fc-cat": 5305, + "fc-conflist": 4822, + "fc-list": 5305, + "fc-match": 5305, + "fc-pattern": 5305, + "fc-query": 5305, + "fc-scan": 5305, + "fc-validate": 5305, "fc_actg_coordinate": 1, "fc_calc_cutoff": 1, "fc_consensus": 1, @@ -11031,8 +11045,8 @@ "ffindex_resume.pl": 5, "ffindex_unpack": 4, "ffitch": 2, - "ffmpeg": 9, - "ffprobe": 9, + "ffmpeg": 10, + "ffprobe": 10, "ffq": 1, "ffreqboot": 2, "fftns": 98, @@ -11410,7 +11424,7 @@ "fixqt4headers.pl": 236, "fixremdcouts.py": 6, "fkitsch": 2, - "flac": 42, + "flac": 43, "flag_circular.py": 1, "flagstats-quickbam": 1, "flaimapper": 1, @@ -11477,7 +11491,7 @@ "font-awesome-to-png": 2, "font2c": 3, "fontinst": 1, - "fonttools": 385, + "fonttools": 386, "fop": 1, "forceOneClusterPerPairMem.py": 1, "forest.py": 1, @@ -11564,7 +11578,7 @@ "freec": 1, "freec2bed.pl": 1, "freec2circos.pl": 1, - "freetype-config": 5800, + "freetype-config": 5801, "freeze_graph": 25, "freq2group.pl": 5, "frequency.py": 1, @@ -11578,7 +11592,7 @@ "frg2fastq": 2, "frg2ta": 2, "frgs2clones": 3, - "fribidi": 3997, + "fribidi": 3998, "frictionless": 1, "frm_admin": 1, "frm_purged": 1, @@ -11950,7 +11964,7 @@ "gapless.sh": 1, "gapmm2": 1, "gappa": 2, - "gapplication": 2344, + "gapplication": 2345, "garnett_check_markers.R": 1, "garnett_classify_cells.R": 1, "garnett_cli_post_install_tests.bats": 1, @@ -12090,8 +12104,8 @@ "gdbm_dump": 25, "gdbm_load": 25, "gdbmtool": 25, - "gdbus": 1651, - "gdbus-codegen": 1649, + "gdbus": 1652, + "gdbus-codegen": 1650, "gdc-client": 1, "gdcmpgif": 232, "gddiag": 19, @@ -12144,17 +12158,17 @@ "genbank_to": 1, "genblastG": 1, "genbox": 1, - "genbrk": 5800, - "gencfu": 5800, + "genbrk": 5801, + "gencfu": 5801, "genclust": 1, - "gencnval": 5800, + "gencnval": 5801, "gencode_extract_relevant_gtf_exons.pl": 1, "gencode_singleton_unit_test": 5, "genconf": 1, "gencore": 1, "gencove": 1, "gendb": 13, - "gendict": 5800, + "gendict": 5801, "gendist": 10, "gene2protein.db3": 2, "gene2range": 189, @@ -12306,7 +12320,7 @@ "genotyphi.py": 1, "genpcz": 2, "genpept2gsi.pl": 2, - "genrb": 5800, + "genrb": 5801, "genreflex": 3, "genremdinputs.py": 6, "genrestr": 4, @@ -12551,7 +12565,7 @@ "getdepth_min": 1, "getdepth_min_dir": 1, "getfastq.sh": 1, - "getfattr": 39, + "getfattr": 40, "getfeatures.py": 2, "getfilesToTaxNodes": 1, "getgenomealigndepth": 1, @@ -12576,9 +12590,9 @@ "getscu": 1, "getsize": 13, "getsnvfreq_by_interval": 1, - "gettext": 5274, - "gettext.sh": 5274, - "gettextize": 5274, + "gettext": 5275, + "gettext.sh": 5275, + "gettextize": 5275, "getuniqgenomealign": 1, "getuniqgenomealign_interval": 1, "getuniqgenomealign_sample_names": 1, @@ -12651,7 +12665,7 @@ "gffutils-cli": 34, "gfinisher": 1, "gflags2man.py": 3, - "gflags_completions.sh": 62, + "gflags_completions.sh": 63, "gfmix": 1, "gfmix.yaml": 1, "gfmix_mammal.smk": 1, @@ -12671,23 +12685,23 @@ "ghmm-config": 3, "ghostx": 3, "ghostz": 1, - "gi-compile-repository": 6, - "gi-decompile-typelib": 6, - "gi-inspect-typelib": 6, + "gi-compile-repository": 7, + "gi-decompile-typelib": 7, + "gi-inspect-typelib": 7, "gi2ancestors.sh": 30, "gi2taxid.sh": 30, "gid-taxid": 1, "gie": 39, - "gif2h5": 534, + "gif2h5": 535, "gif2hdf": 122, - "gif2rgb": 737, + "gif2rgb": 738, "gif2tiff": 189, "gif2webp": 348, - "gifbuild": 737, - "gifclrmp": 737, + "gifbuild": 738, + "gifclrmp": 738, "gifecho": 39, "giffilter": 25, - "giffix": 737, + "giffix": 738, "gifinto": 39, "gifmaker.py": 20, "gifrop": 1, @@ -12698,18 +12712,18 @@ "gifrop_pannotate.R": 1, "gifrop_plots.R": 1, "gifsponge": 25, - "giftext": 737, + "giftext": 738, "giftogd2": 232, - "giftool": 737, + "giftool": 738, "gigrnd.py": 1, "gil2bin": 1, "gimbleprep": 1, "gimme": 4, "gimme_taxa.py": 7, "ginsi": 98, - "gio": 1539, + "gio": 1540, "gio-launch-desktop": 668, - "gio-querymodules": 1651, + "gio-querymodules": 1652, "git": 28, "git-clang-format": 7, "git-cvsserver": 28, @@ -12736,11 +12750,11 @@ "glam2scan": 13, "glam2scan2html": 13, "glewinfo": 1, - "glib-compile-resources": 1649, - "glib-compile-schemas": 1651, - "glib-genmarshal": 1649, - "glib-gettextize": 1649, - "glib-mkenums": 1649, + "glib-compile-resources": 1650, + "glib-compile-schemas": 1652, + "glib-genmarshal": 1650, + "glib-gettextize": 1650, + "glib-mkenums": 1650, "glim-diff.awk": 2, "glimmer3": 2, "glimmerhmm": 15, @@ -12827,9 +12841,9 @@ "gnparser": 1, "gnuplot": 24, "gnuplot_qt": 1, - "gnutls-cli": 30, - "gnutls-cli-debug": 30, - "gnutls-serv": 30, + "gnutls-cli": 31, + "gnutls-cli-debug": 31, + "gnutls-serv": 31, "go": 5, "go-apply-xslt": 1, "go-dag-summary.pl": 1, @@ -12868,7 +12882,7 @@ "goalign": 1, "goalign_test.sh": 1, "goat-cli": 1, - "gobject-query": 1649, + "gobject-query": 1650, "goblin": 1, "gocr": 2, "gocr.tcl": 2, @@ -12940,13 +12954,13 @@ "gpg-agent": 2, "gpg-card": 2, "gpg-connect-agent": 2, - "gpg-error": 29, + "gpg-error": 30, "gpg-error-config": 4, "gpg-wks-client": 2, "gpg-wks-server": 2, "gpgconf": 2, "gpgparsemail": 2, - "gpgrt-config": 29, + "gpgrt-config": 30, "gpgscm": 2, "gpgsm": 2, "gpgsplit": 2, @@ -13001,7 +13015,7 @@ "grep": 19, "grep.py": 1, "grepf": 1, - "gresource": 1651, + "gresource": 1652, "gretel": 1, "gretel-snpper": 1, "grf-alignment": 5, @@ -13052,13 +13066,13 @@ "group_significance.py": 1, "groups": 82, "grow-readbank": 2, - "grpc_cpp_plugin": 135, - "grpc_csharp_plugin": 135, - "grpc_node_plugin": 135, - "grpc_objective_c_plugin": 135, - "grpc_php_plugin": 135, - "grpc_python_plugin": 135, - "grpc_ruby_plugin": 135, + "grpc_cpp_plugin": 136, + "grpc_csharp_plugin": 136, + "grpc_node_plugin": 136, + "grpc_objective_c_plugin": 136, + "grpc_php_plugin": 136, + "grpc_python_plugin": 136, + "grpc_ruby_plugin": 136, "gs": 104, "gsbj": 104, "gscat": 2, @@ -13068,7 +13082,7 @@ "gsea": 1, "gsea-cli": 1, "gseapy": 4, - "gsettings": 1651, + "gsettings": 1652, "gsf": 1, "gsf-office-thumbnailer": 1, "gsf-vba-dump": 1, @@ -13085,26 +13099,26 @@ "gsnapl.sse42": 11, "gsnd": 104, "gsort": 5, - "gss-client": 5774, + "gss-client": 5775, "gss-server": 2, "gst-completion-helper": 1, - "gst-device-monitor-1.0": 228, - "gst-discoverer-1.0": 228, - "gst-inspect-1.0": 242, - "gst-launch-1.0": 242, - "gst-play-1.0": 228, + "gst-device-monitor-1.0": 229, + "gst-discoverer-1.0": 229, + "gst-inspect-1.0": 243, + "gst-launch-1.0": 243, + "gst-play-1.0": 229, "gst-plugin-scanner": 1, "gst-ptp-helper": 1, - "gst-stats-1.0": 242, - "gst-typefind-1.0": 242, + "gst-stats-1.0": 243, + "gst-typefind-1.0": 243, "gstacks": 1, "gsutil": 11, "gt": 10, "gt_lods": 1, "gtdbtk": 2, "gtest": 3, - "gtester": 1649, - "gtester-report": 1649, + "gtester": 1650, + "gtester-report": 1650, "gtf-to-bed12": 3, "gtf2aa.pl": 12, "gtf2bed": 15, @@ -13303,8 +13317,8 @@ "gzip": 18, "h-num": 1, "h-num.pl": 3, - "h264dec": 9, - "h264enc": 9, + "h264dec": 10, + "h264enc": 10, "h2load": 3929, "h2ph": 1681, "h2xs": 1681, @@ -13312,33 +13326,33 @@ "h4_ncgen": 122, "h4cc": 122, "h4redeploy": 122, - "h52gif": 534, - "h5c++": 534, - "h5cc": 539, - "h5clear": 518, - "h5copy": 534, - "h5debug": 534, - "h5delete": 75, - "h5diff": 534, - "h5dump": 536, - "h5fc": 521, - "h5format_convert": 518, - "h5fuse.sh": 45, - "h5import": 534, - "h5jam": 534, - "h5ls": 534, - "h5mkgrp": 534, + "h52gif": 535, + "h5c++": 535, + "h5cc": 540, + "h5clear": 519, + "h5copy": 535, + "h5debug": 535, + "h5delete": 76, + "h5diff": 535, + "h5dump": 537, + "h5fc": 522, + "h5format_convert": 519, + "h5fuse.sh": 46, + "h5import": 535, + "h5jam": 535, + "h5ls": 535, + "h5mkgrp": 535, "h5pcc": 3, "h5perf": 3, - "h5perf_serial": 534, + "h5perf_serial": 535, "h5pfc": 3, - "h5redeploy": 534, - "h5repack": 534, - "h5repart": 534, - "h5stat": 534, - "h5tools_test_utils": 25, - "h5unjam": 534, - "h5watch": 518, + "h5redeploy": 535, + "h5repack": 535, + "h5repart": 535, + "h5stat": 535, + "h5tools_test_utils": 26, + "h5unjam": 535, + "h5watch": 519, "hAMRoaster": 1, "h_num": 1, "haarz.x": 1, @@ -13480,11 +13494,11 @@ "haystack_pipeline": 1, "haystack_run_test": 1, "haystack_tf_activity_plane": 1, - "hb-info": 255, - "hb-ot-shape-closure": 5049, - "hb-shape": 5049, - "hb-subset": 4613, - "hb-view": 5006, + "hb-info": 256, + "hb-ot-shape-closure": 5050, + "hb-shape": 5050, + "hb-subset": 4614, + "hb-view": 5007, "hbvblast.sh": 1, "hca-matrix-downloader": 1, "hca-mtx-to-10x": 1, @@ -13664,7 +13678,7 @@ "hlp-xtract.txt": 73, "hlso": 1, "hm_cluster_predict.py": 1, - "hmac256": 29, + "hmac256": 30, "hmaptool": 4, "hmm-assembler.pl": 2, "hmm-info": 2, @@ -13849,21 +13863,21 @@ "humann_unpack_pathways": 1, "humid": 1, "hv-pipeline.py": 1, - "hwloc-annotate": 60, + "hwloc-annotate": 61, "hwloc-assembler": 2, "hwloc-assembler-remote": 2, - "hwloc-bind": 60, - "hwloc-calc": 60, - "hwloc-compress-dir": 60, - "hwloc-diff": 60, + "hwloc-bind": 61, + "hwloc-calc": 61, + "hwloc-compress-dir": 61, + "hwloc-diff": 61, "hwloc-distances": 2, - "hwloc-distrib": 60, - "hwloc-gather-cpuid": 58, - "hwloc-gather-topology": 60, - "hwloc-info": 60, - "hwloc-ls": 60, - "hwloc-patch": 60, - "hwloc-ps": 60, + "hwloc-distrib": 61, + "hwloc-gather-cpuid": 59, + "hwloc-gather-topology": 61, + "hwloc-info": 61, + "hwloc-ls": 61, + "hwloc-patch": 61, + "hwloc-ps": 61, "hyb_analyze": 1, "hyb_check": 1, "hyb_eval": 1, @@ -13930,9 +13944,9 @@ "ichar": 1, "icon-font-to-png": 2, "iconv": 5462, - "icu-config": 5800, - "icuexportdata": 2016, - "icuinfo": 5800, + "icu-config": 5801, + "icuexportdata": 2017, + "icuinfo": 5801, "id": 82, "idba": 10, "idba.o": 10, @@ -13962,10 +13976,10 @@ "idfetch": 1, "idiag-socket-details": 9, "idle": 332, - "idle3": 3299, + "idle3": 3300, "idle3.10": 802, "idle3.11": 264, - "idle3.12": 174, + "idle3.12": 175, "idle3.4": 6, "idle3.5": 103, "idle3.6": 342, @@ -13975,7 +13989,7 @@ "idlj": 117, "idmatrix.sh": 30, "idn": 30, - "idn2": 261, + "idn2": 262, "idpAssemble": 2, "idpQonvert": 2, "idpQuery": 2, @@ -14077,9 +14091,9 @@ "illuminate": 1, "illumiprocessor": 2, "ilp-rrrmt": 1, - "imagecodecs": 21, - "imageio_download_bin": 23, - "imageio_remove_bin": 23, + "imagecodecs": 22, + "imageio_download_bin": 24, + "imageio_remove_bin": 24, "imagespread": 4, "imc": 2, "imcopy": 47, @@ -14094,8 +14108,8 @@ "img2py": 5, "img2webp": 339, "img2xpm": 5, - "imgcmp": 5, - "imginfo": 5, + "imgcmp": 6, + "imginfo": 6, "imgsize": 63, "immune-ml": 1, "immune-ml-quickstart": 1, @@ -14179,11 +14193,11 @@ "infoalign": 24, "infoassembly": 24, "infobase": 24, - "infocmp": 7663, + "infocmp": 7664, "inforesidue": 24, "informant.py": 1, "infoseq": 24, - "infotocap": 7663, + "infotocap": 7664, "ini2xml": 13, "init_Trinotate_sqlite_db.pl": 1, "init_db.sh": 1, @@ -14335,8 +14349,8 @@ "iphop": 1, "ipopt": 1, "ipopt_sens": 1, - "ippeveprinter": 186, - "ipptool": 186, + "ippeveprinter": 187, + "ipptool": 187, "ipr_update_gff": 1, "iprscan2gff3": 1, "iptest": 53, @@ -14405,7 +14419,7 @@ "isql": 1, "iss": 2, "isutf8": 3, - "isympy": 29, + "isympy": 30, "it.cpython-36m-x86_64-linux-gnu.so": 1, "it.so": 1, "iterate": 2, @@ -14507,7 +14521,7 @@ "jasmine_igv.jar": 1, "jasmine_iris.jar": 1, "jaspar2meme": 13, - "jasper": 5, + "jasper": 6, "jaspextract": 24, "jaspscan": 24, "jass": 1, @@ -14541,7 +14555,7 @@ "jhsdb": 425, "jimage": 425, "jinfo": 534, - "jiv": 4, + "jiv": 5, "jjs": 420, "jlink": 425, "jlpm": 2, @@ -14580,8 +14594,8 @@ "jp.py": 100, "jpackage": 115, "jpeg2hdf": 122, - "jpegtran": 5739, - "jpgicc": 978, + "jpegtran": 5740, + "jpgicc": 979, "jpredapi": 1, "jps": 534, "jq": 300, @@ -14653,14 +14667,14 @@ "just-first-key": 13, "just_blast_test.pl": 1, "jwebserver": 33, - "k5srvutil": 5774, + "k5srvutil": 5775, "k8": 159, "k8-Linux": 1, "k_means": 1, "k_means_coefficient": 1, "k_neighbors": 1, "k_neighbors_coefficient": 1, - "kadmin": 5774, + "kadmin": 5775, "kadmin.local": 2, "kadmind": 2, "kaiju": 4, @@ -14754,7 +14768,7 @@ "kdbmeta.3.0.0": 2, "kdbmeta.3.0.3": 1, "kdbmeta.3.1.0": 1, - "kdestroy": 5774, + "kdestroy": 5775, "kea-config": 35, "keep-header": 1, "keep-ribo-periodic": 1, @@ -14764,7 +14778,7 @@ "keggcharter.py": 1, "keggpathway_map.py": 1, "keyFreq": 1, - "keyctl": 2404, + "keyctl": 2405, "keygen": 1, "keyring": 10, "keytool": 534, @@ -14795,7 +14809,7 @@ "kinSimRiboswitch": 1, "king": 1, "kingfisher": 1, - "kinit": 5774, + "kinit": 5775, "kinship-read": 1, "kinshipDecompose": 1, "kinwalker": 48, @@ -14808,7 +14822,7 @@ "kitsch": 10, "kitsune": 1, "kleborate": 1, - "klist": 5774, + "klist": 5775, "kma": 18, "kma_index": 18, "kma_shm": 18, @@ -14893,7 +14907,7 @@ "kp1mer_to_kmer.py": 1, "kp2np.py": 1, "kpal": 2, - "kpasswd": 5774, + "kpasswd": 5775, "kpileup.py": 1, "kprop": 2, "kpropd": 2, @@ -14940,7 +14954,7 @@ "krakenuniq-report": 1, "krakenuniq-translate": 1, "krakmeopen": 1, - "krb5-config": 5774, + "krb5-config": 5775, "krb5-send-pr": 2, "krb5kdc": 2, "kreport2krona.py": 3, @@ -14956,9 +14970,9 @@ "kseq_split": 1, "ksnp": 1, "kssd": 1, - "ksu": 5774, + "ksu": 5775, "ksw": 1, - "kswitch": 5774, + "kswitch": 5775, "ktClassifyBLAST": 16, "ktClassifyHits": 12, "ktGetContigMagnitudes": 16, @@ -14989,12 +15003,12 @@ "ktserver": 2, "kttimedmgr": 2, "kttimedtest": 2, - "ktutil": 5774, + "ktutil": 5775, "ktutilmgr": 2, "ktutilserv": 2, "ktutiltest": 2, "kubectl": 1, - "kvno": 5774, + "kvno": 5775, "kwip": 2, "kwip-stats": 2, "l4p-tmpl": 32, @@ -15008,7 +15022,7 @@ "lambda": 1, "lambda2": 1, "lambda_indexer": 1, - "lame": 35, + "lame": 36, "langford-number": 2, "laser": 2, "laser-core": 2, @@ -15146,19 +15160,19 @@ "libclair3.cpython-36m-x86_64-linux-gnu.so": 1, "libclair3.o": 1, "libclair3.so": 1, - "libdeflate-gunzip": 4101, - "libdeflate-gzip": 4101, + "libdeflate-gunzip": 4102, + "libdeflate-gzip": 4102, "libdrawgram.so": 5, "libdrawtree.so": 5, "libfile.pl": 1, "libfile.pl.bak": 1, - "libgcrypt-config": 29, + "libgcrypt-config": 30, "libiomp5md.dll": 1, "liblist.pl": 1, "liblist.pl.bak": 1, "libnetcfg": 1681, - "libpng-config": 5853, - "libpng16-config": 5853, + "libpng-config": 5854, + "libpng16-config": 5854, "libpypy-c.so": 1, "libpypy-c.so.debug": 1, "libpypy3-c.so.debug": 3, @@ -15208,13 +15222,14 @@ "lingenome": 1, "linguist": 245, "linguist-qt4": 3, + "linguist6": 1, "linguistic_sequence_complexity.py": 1, "link": 82, "link_bin_sequences.py": 1, "link_ssv.py": 1, "linkage2allegro": 1, "linkhsp_unit_test": 5, - "linkicc": 978, + "linkicc": 979, "linknets": 2, "links2sql.pl": 7, "linksBed": 269, @@ -15478,12 +15493,12 @@ "lsirq": 8, "lslocks": 13, "lslogins": 13, - "lsm2bin": 21, + "lsm2bin": 22, "lsmem": 13, "lsns": 13, "lss3": 29, - "lstopo": 60, - "lstopo-no-graphics": 60, + "lstopo": 61, + "lstopo-no-graphics": 61, "ltqnorm.pl": 1, "ltqnorm.pl.bak": 1, "ltr_finder": 3, @@ -15519,21 +15534,21 @@ "lwp-mirror": 193, "lwp-request": 193, "lyner": 1, - "lz4": 3500, + "lz4": 3501, "lz4_decompress": 2, - "lz4c": 3499, - "lz4cat": 3499, - "lzcat": 7488, - "lzcmp": 7488, - "lzdiff": 7488, - "lzegrep": 7488, - "lzfgrep": 7488, - "lzgrep": 7488, - "lzless": 7488, - "lzma": 7488, - "lzmadec": 7488, - "lzmainfo": 7488, - "lzmore": 7488, + "lz4c": 3500, + "lz4cat": 3500, + "lzcat": 7489, + "lzcmp": 7489, + "lzdiff": 7489, + "lzegrep": 7489, + "lzfgrep": 7489, + "lzgrep": 7489, + "lzless": 7489, + "lzma": 7489, + "lzmadec": 7489, + "lzmainfo": 7489, + "lzmore": 7489, "lzop_build_offset_table.py": 59, "m-party": 1, "m-tx": 1, @@ -15849,7 +15864,7 @@ "makechimeras.sh": 30, "makeclusterdb": 4, "makecontaminatedgenomes.sh": 30, - "makeconv": 5800, + "makeconv": 5801, "makedtx": 1, "makefasta.awk": 1, "makegeo": 35, @@ -16519,7 +16534,7 @@ "metadata_conda_debug.yaml": 29, "metadata_merger.py": 1, "metaeuk": 4, - "metaflac": 42, + "metaflac": 43, "metagene": 3, "metagenome_pipeline.py": 1, "metagenomics": 1, @@ -16977,13 +16992,13 @@ "mpest": 1, "mpfp++": 1, "mpfp++64": 1, - "mpg123": 27, - "mpg123-id3dump": 27, - "mpg123-strip": 27, + "mpg123": 28, + "mpg123-id3dump": 28, + "mpg123-strip": 28, "mpi.pl": 1, "mpiCC": 72, "mpic++": 87, - "mpicalc": 29, + "mpicalc": 30, "mpicc": 87, "mpich2version": 1, "mpichversion": 14, @@ -17006,9 +17021,9 @@ "mprof-report": 15, "mptopdf": 1, "mpxstats": 1, - "mqtt5_app": 34, - "mqtt5_canary": 34, - "mqtt5canary": 34, + "mqtt5_app": 35, + "mqtt5_canary": 35, + "mqtt5canary": 35, "mrcfile-header": 2, "mrcfile-validate": 2, "mreps": 2, @@ -17048,24 +17063,24 @@ "mseqtools": 1, "msformatter": 1, "msfragger": 2, - "msgattrib": 5274, - "msgcat": 5274, - "msgcmp": 5274, - "msgcomm": 5274, - "msgconv": 5274, - "msgen": 5274, - "msgexec": 5274, + "msgattrib": 5275, + "msgcat": 5275, + "msgcmp": 5275, + "msgcomm": 5275, + "msgconv": 5275, + "msgen": 5275, + "msgexec": 5275, "msgf2pin": 1, "msgf_plus": 3, - "msgfilter": 5274, - "msgfmt": 5274, + "msgfilter": 5275, + "msgfmt": 5275, "msgfplus_search.rb": 1, - "msggrep": 5274, - "msginit": 5274, - "msgmerge": 5274, + "msggrep": 5275, + "msginit": 5275, + "msgmerge": 5275, "msgserv": 1, - "msgunfmt": 5274, - "msguniq": 5274, + "msgunfmt": 5275, + "msguniq": 5275, "msi": 1, "msi_cluster2reads": 1, "msi_clustr2map.pl": 1, @@ -17317,7 +17332,7 @@ "nasm": 1, "nasp": 1, "native2ascii": 112, - "natsort": 142, + "natsort": 143, "nb-classify": 1, "nb-train": 1, "nbmodel_stan2.py": 1, @@ -17356,9 +17371,9 @@ "ncrf_to_bed": 2, "ncrf_to_bed.py": 2, "ncurses5-config": 565, - "ncurses6-config": 6956, + "ncurses6-config": 6957, "ncursesw5-config": 703, - "ncursesw6-config": 6957, + "ncursesw6-config": 6958, "ndg_httpclient": 2, "ndisasm": 1, "ndmetis": 58, @@ -17403,9 +17418,9 @@ "netsyn_getINSDCFiles": 1, "netsyn_parseINSDCFiles_GetTaxonomy": 1, "netsyn_syntenyFinder": 1, - "nettle-hash": 30, - "nettle-lfib-stream": 30, - "nettle-pbkdf2": 30, + "nettle-hash": 31, + "nettle-lfib-stream": 31, + "nettle-pbkdf2": 31, "network_build": 1, "network_extract": 1, "network_merge": 1, @@ -17448,7 +17463,7 @@ "nf-test": 1, "nfe-umbrella-slice": 6, "ngd": 9, - "ngettext": 5274, + "ngettext": 5275, "ngg_barabasi_albert": 2, "ngg_barbell": 2, "ngg_complete": 2, @@ -17458,9 +17473,9 @@ "ngg_newman_watts_strogatz": 2, "ngg_path": 2, "ngg_ring_lattice": 2, - "nghttp": 4442, - "nghttpd": 4442, - "nghttpx": 4442, + "nghttp": 4443, + "nghttpd": 4443, + "nghttpx": 4443, "ngless": 2, "ngless-wrapped": 1, "nglview": 2, @@ -17601,7 +17616,7 @@ "normalize_multicov.pl": 1, "normalize_oneD.R": 1, "normalize_table.py": 1, - "normalizer": 454, + "normalizer": 455, "normandcorrectwrapper.sh": 1, "nose2": 1, "nose2-2.7": 1, @@ -17701,7 +17716,7 @@ "nullarbor.pl": 1, "nulltype_module.py": 1, "numCI": 4, - "numba": 131, + "numba": 132, "number-lines": 1, "numfmt": 82, "numlines": 1, @@ -17888,7 +17903,7 @@ "ocloc": 1, "ococo": 1, "ocrad": 2, - "ocsptool": 30, + "ocsptool": 31, "octanol": 24, "octave": 1, "octave-4.2.1": 1, @@ -17974,21 +17989,21 @@ "opal_wrapper": 72, "ope": 2, "open-shop": 2, - "opencv_annotation": 4, - "opencv_interactive-calibration": 4, - "opencv_model_diagnostics": 3, - "opencv_version": 4, - "opencv_visualisation": 4, - "opencv_waldboost_detector": 4, + "opencv_annotation": 5, + "opencv_interactive-calibration": 5, + "opencv_model_diagnostics": 4, + "opencv_version": 5, + "opencv_visualisation": 5, + "opencv_waldboost_detector": 5, "openmg": 1, "openslide-quickhash1sum": 2, "openslide-show-properties": 2, "openslide-write-png": 2, - "openssl": 7732, + "openssl": 7733, "opentargets_validator": 1, - "opj_compress": 632, - "opj_decompress": 632, - "opj_dump": 632, + "opj_compress": 633, + "opj_decompress": 633, + "opj_dump": 633, "opl2ofm": 1, "opsin": 1, "opt": 6, @@ -18007,11 +18022,11 @@ "orator": 1, "orbd": 117, "orc-bugreport": 14, - "orc-contents": 58, - "orc-memory": 53, - "orc-metadata": 58, - "orc-scan": 53, - "orc-statistics": 58, + "orc-contents": 59, + "orc-memory": 54, + "orc-metadata": 59, + "orc-scan": 54, + "orc-statistics": 59, "orca-server": 1, "orcc": 14, "order.smk": 1, @@ -18081,7 +18096,7 @@ "otu_filters.py": 1, "otu_filters_tpl.html": 1, "otu_to_tax_name.py": 1, - "out123": 27, + "out123": 28, "out2summary": 2, "out_to_chain.py": 59, "outocp": 1, @@ -18129,8 +18144,8 @@ "ovp2ovf": 1, "owl2obo.pl": 1, "owlrl": 1, - "p11-kit": 6, - "p11tool": 6, + "p11-kit": 7, + "p11tool": 7, "p2n": 1, "pFst": 31, "pHierCC": 1, @@ -18150,9 +18165,9 @@ "pKiss_subopt_window": 1, "pModel": 6, "pVst": 31, - "pa-info": 39, + "pa-info": 40, "pacBioToCA": 3, - "pacat": 39, + "pacat": 40, "pacbio-correct": 2, "pacbio-correct.3": 2, "pacbio-correct.3.0.0": 2, @@ -18173,9 +18188,9 @@ "packmol": 6, "packmol-memgen": 6, "pacmd": 25, - "pactl": 39, + "pactl": 40, "padaligner": 7, - "padsp": 39, + "padsp": 40, "paf2chain.awk": 1, "paf2gfa": 1, "paf_to_CARNAC.py": 1, @@ -18206,7 +18221,7 @@ "palindrome": 24, "paltohdf": 122, "pam": 1, - "pamon": 39, + "pamon": 40, "pamp": 65, "panISa.py": 1, "panX.py": 1, @@ -18280,7 +18295,7 @@ "papaa_targene_summary_figures.R": 1, "papaa_visualize_decisions.py": 1, "papaa_within_disease_analysis.py": 1, - "paplay": 39, + "paplay": 40, "paplot": 1, "par.pl": 1, "paragone": 1, @@ -18330,8 +18345,8 @@ "parcat": 99, "parebrick": 1, "parebrick-charts": 1, - "parec": 39, - "parecord": 39, + "parec": 40, + "parecord": 40, "pargenes-hpc-debug.py": 1, "pargenes-hpc.py": 1, "pargenes.py": 1, @@ -18493,11 +18508,11 @@ "pcoaPlot.py": 2, "pcor": 1, "pcre-config": 4932, - "pcre2-config": 3691, + "pcre2-config": 3692, "pcre2_jit_test": 3678, - "pcre2grep": 3691, + "pcre2grep": 3692, "pcre2posix_test": 113, - "pcre2test": 3691, + "pcre2test": 3692, "pcregrep": 4932, "pcretest": 4932, "pct2rgb.py": 4, @@ -18746,7 +18761,7 @@ "pg_build_idx": 1, "pg_build_sdb": 1, "pg_checksums": 39, - "pg_config": 138, + "pg_config": 139, "pg_controldata": 45, "pg_ctl": 45, "pg_dedup": 1, @@ -19084,10 +19099,10 @@ "pints_caller": 1, "pints_normalizer": 1, "pints_visualizer": 1, - "pip": 3631, + "pip": 3632, "pip2": 1, "pip2.7": 1, - "pip3": 2556, + "pip3": 2557, "pipdeptree": 1, "pipelign": 1, "pipeline.py": 2, @@ -19120,6 +19135,7 @@ "pixelator": 1, "pixeltool": 245, "pixeltool-qt4": 3, + "pixeltool6": 1, "pizzly": 1, "pizzly_flatten_json.py": 1, "pizzly_flatten_json.py.bak": 1, @@ -19234,12 +19250,12 @@ "pk_treeness_over_rcv": 1, "pk_variable_sites": 1, "pk_vs": 1, - "pkcs1-conv": 30, + "pkcs1-conv": 31, "pkfix": 1, "pkfix-helper": 1, "pkg-config": 76, "pkg-config.bin": 76, - "pkgdata": 5800, + "pkgdata": 5801, "pkginfo": 10, "pkill": 1, "pktogf": 1, @@ -19438,9 +19454,9 @@ "pmxmutate": 1, "pn2pdf": 1, "pneumo-typer": 1, - "png-fix-itxt": 5853, + "png-fix-itxt": 5854, "pngcp": 89, - "pngfix": 5853, + "pngfix": 5854, "pngtogd": 232, "pngtogd2": 232, "pnps-gen": 1, @@ -19879,7 +19895,7 @@ "protmapper": 1, "protobuf-net.dll": 2, "protobuf-net.xml": 2, - "protoc": 251, + "protoc": 252, "protoc-23.1.0": 1, "protoc-23.3.0": 4, "protoc-23.4.0": 6, @@ -19887,7 +19903,7 @@ "protoc-24.4.0": 19, "protoc-25.1.0": 5, "protoc-25.2.0": 2, - "protoc-25.3.0": 4, + "protoc-25.3.0": 5, "protoc-gen-grpclib_python": 1, "protoc-gen-mypy": 1, "protoc-gen-mypy_grpc": 1, @@ -19962,12 +19978,12 @@ "psiblast": 321, "psiblast_iteration_unit_test": 5, "psiblast_unit_test": 5, - "psicc": 978, + "psicc": 979, "psiclass": 1, "psiphi": 24, "psite": 3, "pskel": 1, - "psktool": 30, + "psktool": 31, "psl2bed": 14, "psl2bed-float128": 14, "psl2bed-megarow": 14, @@ -20195,11 +20211,11 @@ "pydamage": 1, "pydemult": 1, "pydicom": 1, - "pydoc": 3630, - "pydoc3": 3299, + "pydoc": 3631, + "pydoc3": 3300, "pydoc3.10": 802, "pydoc3.11": 264, - "pydoc3.12": 174, + "pydoc3.12": 175, "pydoc3.4": 6, "pydoc3.5": 103, "pydoc3.6": 342, @@ -20220,12 +20236,12 @@ "pyflyte-execute": 1, "pyflyte-fast-execute": 1, "pyflyte-map-execute": 1, - "pyftmerge": 385, - "pyftsubset": 385, + "pyftmerge": 386, + "pyftsubset": 386, "pygal_gen.py": 2, "pygenetic_code": 1, "pygmentex": 1, - "pygmentize": 243, + "pygmentize": 244, "pygmes": 1, "pygrun": 1, "pygtail": 2, @@ -20323,7 +20339,7 @@ "pytest": 142, "pytest-benchmark": 1, "pythia8-config": 1, - "python": 3631, + "python": 3632, "python-argcomplete-check-easy-install-script": 337, "python-argcomplete-tcsh": 191, "python-build": 2, @@ -20334,15 +20350,15 @@ "python2.5-config": 1, "python2.7": 331, "python2.7-config": 314, - "python3": 3300, - "python3-config": 3299, - "python3.1": 1240, + "python3": 3301, + "python3-config": 3300, + "python3.1": 1241, "python3.10": 802, "python3.10-config": 802, "python3.11": 264, "python3.11-config": 264, - "python3.12": 174, - "python3.12-config": 174, + "python3.12": 175, + "python3.12-config": 175, "python3.4": 6, "python3.4-config": 6, "python3.4m": 6, @@ -20404,17 +20420,21 @@ "qd-config": 3, "qdbus": 243, "qdbus-qt4": 3, + "qdbus6": 1, "qdbuscpp2xml": 243, "qdbuscpp2xml-qt4": 3, "qdbusviewer": 243, "qdbusviewer-qt4": 3, + "qdbusviewer6": 1, "qdbusxml2cpp": 243, "qdbusxml2cpp-qt4": 3, "qdelaunay": 3, "qdistancefieldgenerator": 129, + "qdistancefieldgenerator6": 1, "qdoc": 219, "qdoc3": 9, "qdoc3-qt4": 3, + "qdoc6": 1, "qfilt": 1, "qfy.py": 1, "qgltf": 177, @@ -20432,19 +20452,25 @@ "qlalr": 236, "qmake": 245, "qmake-qt4": 3, + "qmake6": 1, "qmer-filter": 2, "qml": 236, + "qml6": 1, "qmlcachegen": 177, "qmleasing": 236, + "qmleasing6": 1, "qmlformat": 39, "qmlimportscanner": 236, "qmllint": 236, + "qmlls6": 1, "qmlmin": 236, "qmlplugindump": 245, "qmlplugindump-qt4": 3, "qmlpreview": 129, + "qmlpreview6": 1, "qmlprofiler": 236, "qmlscene": 236, + "qmlscene6": 1, "qmltestrunner": 236, "qmltime": 39, "qmltyperegistrar": 39, @@ -20478,17 +20504,20 @@ "qt.conf": 247, "qt3to4": 9, "qt3to4-qt4": 3, + "qt6.conf": 1, "qtattributionsscanner": 177, "qtconfig": 9, "qtconfig-qt4": 3, "qtdiag": 236, + "qtdiag6": 1, "qtip": 1, "qtlplot": 1, "qtlseq": 1, "qtofpeakpicker": 1, "qtpaths": 236, "qtplugininfo": 236, - "qtpy": 4, + "qtplugininfo6": 1, + "qtpy": 5, "qttracereplay": 9, "qttracereplay-qt4": 3, "quake.py": 2, @@ -20663,7 +20692,7 @@ "rasusa": 5, "ratewig.pl": 5, "ratt": 2, - "rav1e": 4, + "rav1e": 5, "raven": 4, "raw2tiff": 5293, "raw_n50": 10, @@ -20731,7 +20760,7 @@ "rdfgraphisomorphism": 32, "rdfpipe": 32, "rdfs2dot": 32, - "rdjpgcom": 5739, + "rdjpgcom": 5740, "rdkit2fps": 1, "rdma_client": 20, "rdma_server": 20, @@ -20824,7 +20853,7 @@ "recgraph": 1, "reciprocal_blast_local": 1, "reciprocal_blast_local.py": 1, - "recode-sr-latin": 5274, + "recode-sr-latin": 5275, "recode_dir": 1, "recode_dir_legacy": 1, "recoder": 24, @@ -21186,7 +21215,7 @@ "rescue_fusion.py": 1, "reseq": 1, "reseq-prepare-names.py": 1, - "reset": 7663, + "reset": 7664, "resetFragLibrary": 2, "reset_array.pl": 1, "reset_experiment.pl": 1, @@ -21405,6 +21434,7 @@ "rodeo2": 1, "rodeo_main.py": 1, "roi": 1, + "roifile": 1, "roimethstat": 1, "rolloff": 1, "rolloffp": 1, @@ -22132,7 +22162,7 @@ "scitokens-test": 1, "scitokens-test-access": 1, "scitokens-verify": 1, - "sclient": 5774, + "sclient": 5775, "sclust_summary.sh": 1, "scluster": 3, "scmap-cli-post-install-tests.bats": 1, @@ -22437,7 +22467,7 @@ "set_source_column.py": 2, "setarch": 13, "setcover": 1, - "setfattr": 39, + "setfattr": 40, "setpythonpath.bat": 3, "setreg": 15, "setsid": 13, @@ -22457,7 +22487,7 @@ "setupGenomicData.py": 1, "setupLogoData.py": 1, "setup_annotation_dbs.py": 1, - "setup_vars_opencv4.sh": 4, + "setup_vars_opencv4.sh": 5, "setupfactory_unit_test": 5, "setxrd.csh": 1, "setxrd.sh": 1, @@ -22488,7 +22518,7 @@ "seurat-split-object.R": 1, "severus": 1, "sexdeterrmine": 1, - "sexp-conv": 30, + "sexp-conv": 31, "sfdp": 198, "sfetch": 4, "sff-dump": 22, @@ -22647,7 +22677,7 @@ "sim-cover2": 2, "sim-shotgun": 2, "sim4db": 3, - "sim_client": 5774, + "sim_client": 5775, "sim_reads": 10, "sim_reads.o": 10, "sim_reads_tran": 10, @@ -22768,7 +22798,7 @@ "skip_selfmatches.py": 1, "skipredundant": 24, "skipseq": 24, - "skivi": 23, + "skivi": 24, "skmer": 1, "skopeo": 1, "skyline2isocor": 1, @@ -22847,17 +22877,17 @@ "snap": 2, "snap-aligner": 2, "snaptools": 1, - "sndfile-cmp": 42, - "sndfile-concat": 42, - "sndfile-convert": 42, - "sndfile-deinterleave": 42, - "sndfile-info": 42, - "sndfile-interleave": 42, - "sndfile-metadata-get": 42, - "sndfile-metadata-set": 42, - "sndfile-play": 42, + "sndfile-cmp": 43, + "sndfile-concat": 43, + "sndfile-convert": 43, + "sndfile-deinterleave": 43, + "sndfile-info": 43, + "sndfile-interleave": 43, + "sndfile-metadata-get": 43, + "sndfile-metadata-set": 43, + "sndfile-play": 43, "sndfile-regtest": 1, - "sndfile-salvage": 42, + "sndfile-salvage": 43, "sniffles": 2, "sniffles-debug": 1, "sniffles_dir": 1, @@ -23198,7 +23228,7 @@ "sqlformat": 9, "sqlite.pl": 1, "sqlite3": 2709, - "sqlite3_analyzer": 7071, + "sqlite3_analyzer": 7072, "sqlitebrowser": 1, "sqlmetal": 15, "sqlsharp": 15, @@ -23320,7 +23350,7 @@ "srnaMapper": 1, "srnapipe": 1, "srprism": 4, - "srptool": 30, + "srptool": 31, "srst2": 1, "srvarv": 1, "ss": 1, @@ -23799,7 +23829,7 @@ "tableproxy64": 1, "tableschema": 1, "tablet": 1, - "tabs": 7663, + "tabs": 7664, "tabulate": 128, "tabulate.py": 1, "tabulator": 1, @@ -23967,9 +23997,9 @@ "tbtamr": 1, "tbvcfreport": 1, "tcdemux": 1, - "tclsh": 7308, + "tclsh": 7309, "tclsh8.5": 473, - "tclsh8.6": 7071, + "tclsh8.6": 7072, "tcode": 24, "tcsh": 3, "td_bignet": 2, @@ -24166,7 +24196,7 @@ "thumbpdf": 1, "tiara": 2, "tiara-test": 2, - "tic": 7663, + "tic": 7664, "tiddit": 1, "tides": 1, "tidk": 1, @@ -24175,22 +24205,22 @@ "tidyp": 66, "tie": 1, "tiff2bw": 5293, - "tiff2fsspec": 16, + "tiff2fsspec": 17, "tiff2pdf": 5293, "tiff2ps": 5293, "tiff2rgba": 5293, "tiffcmp": 5293, - "tiffcomment": 18, - "tiffcp": 5491, + "tiffcomment": 19, + "tiffcp": 5492, "tiffcrop": 5293, "tiffdither": 5293, - "tiffdump": 5491, - "tifffile": 21, - "tiffinfo": 5491, + "tiffdump": 5492, + "tifffile": 22, + "tiffinfo": 5492, "tiffmedian": 5293, - "tiffset": 5491, - "tiffsplit": 5491, - "tificc": 978, + "tiffset": 5492, + "tiffsplit": 5492, + "tificc": 979, "tigStore": 3, "tiger-hash": 11, "tigge_check": 1, @@ -24224,7 +24254,7 @@ "timeout_decorator.py": 1, "timescorealn": 1, "timetree_inference.py": 1, - "timezone-dump": 53, + "timezone-dump": 54, "timsdata.dll": 2, "tin.py": 3, "ting": 1, @@ -24244,7 +24274,7 @@ "titan-gc-prepare.py": 1, "titan.py": 1, "titration": 2, - "tjbench": 366, + "tjbench": 367, "tkconch": 1, "tkpp": 1, "tksm": 1, @@ -24275,7 +24305,7 @@ "to_upper_case.pl.bak": 1, "toco": 76, "toco_from_protos": 76, - "toe": 7663, + "toe": 7664, "tohnsw": 1, "toil": 3, "toil-cwl-runner": 3, @@ -24301,7 +24331,7 @@ "tophat_reports": 3, "tops-viterbi_decoding": 1, "topword.R": 1, - "torch_shm_manager": 3, + "torch_shm_manager": 4, "torchapp": 1, "torchapp-imageclassifier": 1, "torchbiggraph_config": 2, @@ -24313,7 +24343,7 @@ "torchbiggraph_import_from_tsv": 2, "torchbiggraph_partitionserver": 2, "torchbiggraph_train": 2, - "torchrun": 28, + "torchrun": 29, "touch": 82, "toulligqc": 1, "tox": 1, @@ -24325,8 +24355,8 @@ "tpp_hostname": 2, "tpp_models.pl": 2, "tpptray.bat": 2, - "tput": 7663, - "tqdm": 337, + "tput": 7664, + "tqdm": 338, "tr": 82, "trace_comment": 2, "trace_comments": 2, @@ -24396,7 +24426,7 @@ "transform_gfa.py": 1, "transformers-cli": 2, "transformseq": 13, - "transicc": 978, + "transicc": 979, "transit": 1, "transition_counter": 1, "transl": 1, @@ -24535,7 +24565,7 @@ "truncate_reverse_primer.py": 1, "trunkreads": 6, "truspades.py": 46, - "trust": 6, + "trust": 7, "trust-airr.pl": 1, "trust-barcoderep.pl": 1, "trust-simplerep.pl": 1, @@ -24548,7 +24578,7 @@ "tryptic.py": 1, "ts": 3, "tsebra.py": 3, - "tset": 7663, + "tset": 7664, "tskit": 6, "tsort": 82, "tsp": 2, @@ -24583,7 +24613,7 @@ "tth-hash": 11, "ttree": 66, "tts": 5, - "ttx": 385, + "ttx": 386, "tty": 82, "turbocor": 1, "tutorial_eqtlbma.R": 1, @@ -24724,8 +24754,8 @@ "unix2dos": 1, "unix2mac": 1, "unlink": 82, - "unlz4": 3499, - "unlzma": 7488, + "unlz4": 3500, + "unlzma": 7489, "unmapped2anchors.py": 1, "unmerge": 1, "unmerge-paired-reads.sh": 2, @@ -24742,7 +24772,7 @@ "unstarch-typical": 14, "untangle": 2, "unweight_fasta.py": 1, - "unxz": 7713, + "unxz": 7714, "unzip": 32, "unzip.sh": 29, "unziphdf5": 1, @@ -24750,7 +24780,7 @@ "unzipont": 1, "unzipont_dir": 1, "unzipsfx": 25, - "unzstd": 5166, + "unzstd": 5167, "update-blastdb.py": 2, "update-serotypefinder-db": 1, "update-sort-bed-migrate-candidates": 14, @@ -24821,7 +24851,7 @@ "utmpdump": 13, "utrgff2gbrowse.pl": 14, "utrrnaseq": 12, - "uuclient": 5774, + "uuclient": 5775, "uuid": 37, "uuid-config": 37, "uuidgen": 13, @@ -25364,8 +25394,8 @@ "vpl2ovp": 1, "vpl2vpl": 1, "vptovf": 1, - "vpxdec": 8, - "vpxenc": 8, + "vpxdec": 9, + "vpxenc": 9, "vsearch": 31, "vseqinfo": 3, "vseqselect": 3, @@ -25508,7 +25538,7 @@ "wham": 1, "whamg": 1, "whatshap": 14, - "wheel": 3630, + "wheel": 3631, "wheezy.template": 2, "whereis": 13, "which": 1, @@ -25551,9 +25581,9 @@ "winnowmap": 3, "wiq.py": 1, "wisestork": 1, - "wish": 7308, + "wish": 7309, "wish8.5": 473, - "wish8.6": 7071, + "wish8.6": 7072, "wkhtmltoimage": 2, "wkhtmltopdf": 2, "wlmscpfs": 1, @@ -25602,7 +25632,7 @@ "write_strain_fasta.py": 1, "writedb_entry": 1, "writedb_unit_test": 5, - "wrjpgcom": 5739, + "wrjpgcom": 5740, "ws": 2, "wsdl": 15, "wsdl2": 15, @@ -25637,8 +25667,8 @@ "wxrc-3.0": 1, "wxrc-3.1": 2, "wxrc-3.2": 3, - "x264": 9, - "x265": 8, + "x264": 10, + "x265": 9, "x86_64": 13, "x86_64-conda-linux-gnu-addr2line": 3363, "x86_64-conda-linux-gnu-ar": 3363, @@ -25668,7 +25698,7 @@ "x86_64-conda-linux-gnu-gfortran": 3327, "x86_64-conda-linux-gnu-gfortran.bin": 575, "x86_64-conda-linux-gnu-gprof": 3363, - "x86_64-conda-linux-gnu-ld": 5458, + "x86_64-conda-linux-gnu-ld": 5459, "x86_64-conda-linux-gnu-ld.bfd": 3363, "x86_64-conda-linux-gnu-ld.gold": 3363, "x86_64-conda-linux-gnu-nm": 3363, @@ -25704,7 +25734,7 @@ "x86_64-conda_cos6-linux-gnu-gfortran": 4096, "x86_64-conda_cos6-linux-gnu-gfortran.bin": 1344, "x86_64-conda_cos6-linux-gnu-gprof": 4130, - "x86_64-conda_cos6-linux-gnu-ld": 6292, + "x86_64-conda_cos6-linux-gnu-ld": 6293, "x86_64-conda_cos6-linux-gnu-ld.bfd": 4130, "x86_64-conda_cos6-linux-gnu-ld.gold": 4130, "x86_64-conda_cos6-linux-gnu-nm": 4130, @@ -25743,12 +25773,12 @@ "xgboost": 27, "xgboost.dll": 1, "xgboost.lib": 1, - "xgettext": 5274, + "xgettext": 5275, "xgui": 2, "xhmm": 1, "xinteract": 2, "xjc": 117, - "xkbcli": 87, + "xkbcli": 88, "xleap": 6, "xlsx2json.py": 1, "xmatchview-conifer.py": 1, @@ -25757,7 +25787,7 @@ "xmfa2maf": 4, "xmfa2maf.pl": 1, "xml": 1, - "xml2-config": 5365, + "xml2-config": 5366, "xml2-config.bak": 34, "xml2dcm": 1, "xml2dsr": 1, @@ -25770,17 +25800,17 @@ "xml_spellcheck": 64, "xml_split": 64, "xml_to_bas.pl": 3, - "xmlcatalog": 5365, + "xmlcatalog": 5366, "xmlget": 20, "xmlindent": 1, - "xmllint": 5365, + "xmllint": 5366, "xmlpatterns": 243, "xmlpatterns-qt4": 3, "xmlpatternsvalidator": 243, "xmlpatternsvalidator-qt4": 3, "xmltext": 20, "xmlvalid": 1, - "xmlwf": 2334, + "xmlwf": 2335, "xparmed": 7, "xpath": 61, "xpclr": 1, @@ -25836,16 +25866,16 @@ "xxhsum": 31, "xy-plot": 88, "xyalign": 1, - "xz": 7713, - "xzcat": 7488, - "xzcmp": 7488, - "xzdec": 7488, - "xzdiff": 7488, - "xzegrep": 7488, - "xzfgrep": 7488, - "xzgrep": 7488, - "xzless": 7488, - "xzmore": 7488, + "xz": 7714, + "xzcat": 7489, + "xzcmp": 7489, + "xzdec": 7489, + "xzdiff": 7489, + "xzegrep": 7489, + "xzfgrep": 7489, + "xzgrep": 7489, + "xzless": 7489, + "xzmore": 7489, "y2racc": 7, "yacc": 4, "yacht": 1, @@ -25874,7 +25904,7 @@ "yara_mapper": 2, "yasm": 1, "yass": 1, - "yat2m": 29, + "yat2m": 30, "yes": 82, "yn00": 65, "yoyo": 3, @@ -25898,7 +25928,7 @@ "zff2gff3.pl": 2, "zfgrep": 18, "zforce": 18, - "zfp": 21, + "zfp": 22, "zga": 1, "zgrep": 18, "zic": 42, @@ -25922,8 +25952,8 @@ "zol": 1, "zoom": 1, "zoom2sam.pl": 504, - "zopfli": 21, - "zopflipng": 21, + "zopfli": 22, + "zopflipng": 22, "zorro": 1, "zorro_dist.pl": 1, "zpca-counts": 1, @@ -25931,10 +25961,10 @@ "zrun": 3, "zsh": 3, "zsh-5.8": 3, - "zstd": 5166, - "zstdcat": 5166, - "zstdgrep": 4964, - "zstdless": 4964, - "zstdmt": 5166, + "zstd": 5167, + "zstdcat": 5167, + "zstdgrep": 4965, + "zstdless": 4965, + "zstdmt": 5167, "ztr_dump": 2 } \ No newline at end of file diff --git a/quay.io/biocontainers/c/cellpose:3.0.8.json b/quay.io/biocontainers/c/cellpose:3.0.8.json new file mode 100644 index 0000000..26616f5 --- /dev/null +++ b/quay.io/biocontainers/c/cellpose:3.0.8.json @@ -0,0 +1,444 @@ +{ + "2to3": "/usr/local/bin/2to3", + "2to3-3.12": "/usr/local/bin/2to3-3.12", + "JxrDecApp": "/usr/local/bin/JxrDecApp", + "JxrEncApp": "/usr/local/bin/JxrEncApp", + "SvtAv1DecApp": "/usr/local/bin/SvtAv1DecApp", + "SvtAv1EncApp": "/usr/local/bin/SvtAv1EncApp", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "androiddeployqt6": "/usr/local/bin/androiddeployqt6", + "aomdec": "/usr/local/bin/aomdec", + "aomenc": "/usr/local/bin/aomenc", + "aserver": "/usr/local/bin/aserver", + "asn1Coding": "/usr/local/bin/asn1Coding", + "asn1Decoding": "/usr/local/bin/asn1Decoding", + "asn1Parser": "/usr/local/bin/asn1Parser", + "assistant6": "/usr/local/bin/assistant6", + "attr": "/usr/local/bin/attr", + "autopoint": "/usr/local/bin/autopoint", + "bokeh": "/usr/local/bin/bokeh", + "brotli": "/usr/local/bin/brotli", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cbrunsli": "/usr/local/bin/cbrunsli", + "cellpose": 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"sndfile-deinterleave": "/usr/local/bin/sndfile-deinterleave", + "sndfile-info": "/usr/local/bin/sndfile-info", + "sndfile-interleave": "/usr/local/bin/sndfile-interleave", + "sndfile-metadata-get": "/usr/local/bin/sndfile-metadata-get", + "sndfile-metadata-set": "/usr/local/bin/sndfile-metadata-set", + "sndfile-play": "/usr/local/bin/sndfile-play", + "sndfile-salvage": "/usr/local/bin/sndfile-salvage", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "srptool": "/usr/local/bin/srptool", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2fsspec": "/usr/local/bin/tiff2fsspec", + "tiffcomment": "/usr/local/bin/tiffcomment", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffdump": "/usr/local/bin/tiffdump", + "tifffile": "/usr/local/bin/tifffile", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tificc": "/usr/local/bin/tificc", + "timezone-dump": "/usr/local/bin/timezone-dump", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "torch_shm_manager": "/usr/local/bin/torch_shm_manager", + "torchrun": "/usr/local/bin/torchrun", + "tput": "/usr/local/bin/tput", + "tqdm": "/usr/local/bin/tqdm", + "transicc": "/usr/local/bin/transicc", + "trust": "/usr/local/bin/trust", + "tset": "/usr/local/bin/tset", + "ttx": "/usr/local/bin/ttx", + "unlz4": "/usr/local/bin/unlz4", + "unlzma": "/usr/local/bin/unlzma", + "unxz": "/usr/local/bin/unxz", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "vpxdec": "/usr/local/bin/vpxdec", + "vpxenc": "/usr/local/bin/vpxenc", + "wheel": "/usr/local/bin/wheel", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x264": "/usr/local/bin/x264", + "x265": "/usr/local/bin/x265", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "xgettext": "/usr/local/bin/xgettext", + "xkbcli": "/usr/local/bin/xkbcli", + "xml2-config": "/usr/local/bin/xml2-config", + "xmlcatalog": "/usr/local/bin/xmlcatalog", + "xmllint": "/usr/local/bin/xmllint", + "xmlwf": "/usr/local/bin/xmlwf", + "xz": "/usr/local/bin/xz", + "xzcat": "/usr/local/bin/xzcat", + "xzcmp": "/usr/local/bin/xzcmp", + "xzdec": "/usr/local/bin/xzdec", + "xzdiff": "/usr/local/bin/xzdiff", + "xzegrep": "/usr/local/bin/xzegrep", + "xzfgrep": "/usr/local/bin/xzfgrep", + "xzgrep": "/usr/local/bin/xzgrep", + "xzless": "/usr/local/bin/xzless", + "xzmore": "/usr/local/bin/xzmore", + "yat2m": "/usr/local/bin/yat2m", + "zfp": "/usr/local/bin/zfp", + "zopfli": "/usr/local/bin/zopfli", + "zopflipng": "/usr/local/bin/zopflipng", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt", + "env-execute": "/usr/local/env-execute" +} \ No newline at end of file