diff --git a/apis/python/src/tiledbsoma/io/ingest.py b/apis/python/src/tiledbsoma/io/ingest.py index 22d3bb0ec1..eede5e1fbc 100644 --- a/apis/python/src/tiledbsoma/io/ingest.py +++ b/apis/python/src/tiledbsoma/io/ingest.py @@ -514,7 +514,6 @@ def from_anndata( # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # OBS df_uri = _util.uri_joinpath(experiment_uri, "obs") - # XXX good with _write_dataframe( df_uri, conversions.obs_or_var_to_tiledb_supported_array_type(anndata.obs), @@ -566,7 +565,6 @@ def from_anndata( # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # MS/meas/VAR with _write_dataframe( - # XXX good _util.uri_joinpath(measurement_uri, "var"), conversions.obs_or_var_to_tiledb_supported_array_type(anndata.var), id_column_name=var_id_name, @@ -604,7 +602,6 @@ def from_anndata( if has_X: with _create_from_matrix( X_kind, - # XXX good _util.uri_joinpath(measurement_X_uri, X_layer_name), anndata.X, axis_0_mapping=jidmaps.obs_axis, @@ -618,7 +615,6 @@ def from_anndata( for layer_name, layer in anndata.layers.items(): with _create_from_matrix( X_kind, - # XXX good _util.uri_joinpath(measurement_X_uri, layer_name), layer, axis_0_mapping=jidmaps.obs_axis, @@ -663,7 +659,6 @@ def _ingest_obs_var_m_p( # consider a use-dense flag at the tiledbsoma.io API # DenseNDArray, SparseNDArray, - # XXX good _util.uri_joinpath(ad_val_uri, key), conversions.to_tiledb_supported_array_type( key, val @@ -735,7 +730,6 @@ def _ingest_obs_var_m_p( with _create_from_matrix( SparseNDArray, - # XXX good _util.uri_joinpath(raw_X_uri, raw_X_layer_name), anndata.raw.X, axis_0_mapping=jidmaps.obs_axis, @@ -1943,7 +1937,7 @@ def add_matrix_to_collection( with _create_from_matrix( SparseNDArray, - matrix_uri, # XXX good + matrix_uri, matrix_data, ingestion_params=ingestion_params, context=context,