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The "latest" version of Datasette (1.0a13) introduced a new concept for "internal databases", described in #2157 . The legacy _internal database was deprecated, and a new "hidden" internal database replaced it (only accessible through Python code/plugins, not in the UI by default).
The problem here is that the docs you linked are the stable version of Datasette (0.64), while latest.datasette.io uses the bleeding-edge 1.0a13, which is an "alpha" build. Not sure what's the best way to fix this - a stable.datasette.io would be nice, but much work is planned for Datasette 1.0, so hopefully this weird ambiguity doesn't last for much longer?
When following the steps in https://docs.datasette.io/en/stable/internals.html#the-internal-database it appears that the https://latest.datasette.io/_internal link returns a 404 (even when logged in as root)
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