diff --git a/R/sysdata.rda b/R/sysdata.rda index 6732632..a8005ac 100644 Binary files a/R/sysdata.rda and b/R/sysdata.rda differ diff --git a/README.md b/README.md index c28143e..ecef81b 100644 --- a/README.md +++ b/README.md @@ -40,11 +40,11 @@ For each entry in the final list of phenotype terms, we make cross-mappings with phenotype terms from [EFO](https://github.com/EBISPOT/efo), [DO](https://disease-ontology.org/), and the [ICD10 classification](https://www.who.int/standards/classifications/classification-of-diseases). -As of mid August 2024, the following ontology versions are used to create the mapping: +As of early September 2024, the following ontology versions are used to create the mapping: - OncoTree (2021_11_02) - Experimental Factor Ontology v3.69.0 (2024-08-15) -- Disease Ontology (v2024-07-31) +- Disease Ontology (v2024-08-28) **IMPORTANT NOTE**: The mapping established by **phenOncoX** attempts to be comprehensive, but we acknowledge that the presence of missing or diff --git a/data-raw/data-raw.R b/data-raw/data-raw.R index 2452d86..3a7cff3 100644 --- a/data-raw/data-raw.R +++ b/data-raw/data-raw.R @@ -73,7 +73,7 @@ db[['oncotree_core']] <- oncotree_core db[['oncotree_expanded']] <- oncotree_expanded db[['auxiliary_maps']] <- auxiliary_maps -version_bumped <- "0.7.8" +version_bumped <- "0.7.9" gd_records <- list() db_id_ref <- data.frame() diff --git a/data-raw/metadata_phen_oncox.xlsx b/data-raw/metadata_phen_oncox.xlsx index 8537536..65b35ce 100644 Binary files a/data-raw/metadata_phen_oncox.xlsx and b/data-raw/metadata_phen_oncox.xlsx differ