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example.gp
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example.gp
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LOCUS CAX36647 170 aa linear BCT 11-FEB-2009
DEFINITION alcohol dehydrogenase [Arthrobacter sp. JEK-2009].
ACCESSION CAX36647
VERSION CAX36647.1
DBSOURCE embl accession FM995514.1
KEYWORDS .
SOURCE Arthrobacter sp. JEK-2009
ORGANISM Arthrobacter sp. JEK-2009
Bacteria; Actinobacteria; Micrococcales; Micrococcaceae;
Arthrobacter.
REFERENCE 1
AUTHORS Koenig,J.E., Sharp,C., Dlutek,M., Curtis,B., Joss,M., Boucher,Y.
and Doolittle,W.F.
TITLE Integron gene cassettes and degradation of compounds associated
with industrial waste: the case of the Sydney Tar Ponds
JOURNAL Unpublished
REFERENCE 2 (residues 1 to 170)
AUTHORS Koenig,J.E.
TITLE Direct Submission
JOURNAL Submitted (22-JAN-2009) Koenig J.E., Biochemistry and Molecular
Biology, Dalhousie University, 5850 College Street, Halifax, Nova
Scotia, B3H1X5, CANADA
FEATURES Location/Qualifiers
source 1..170
/organism="Arthrobacter sp. JEK-2009"
/isolation_source="tar ponds"
/db_xref="taxon:596415"
/country="Canada:Nova Scotia, Halifax, Sydney Tar Ponds"
/PCR_primers="fwd_name: HS287, fwd_seq:
gcsgctkanctcvrrcgttagsc, rev_name: HS286, rev_seq:
tcsgctkgarcgamttgttagvc"
Protein 1..170
/product="alcohol dehydrogenase"
Region 6..>170
/region_name="DHQ_Fe-ADH"
/note="Dehydroquinate synthase-like (DHQ-like) and
iron-containing alcohol dehydrogenases (Fe-ADH); cl02872"
/db_xref="CDD:295526"
CDS 1..170
/gene="alcohol dehydrogenase"
/coded_by="FM995514.1:273..785"
/transl_table=11
/db_xref="GOA:B9WPR7"
/db_xref="InterPro:IPR001670"
/db_xref="UniProtKB/TrEMBL:B9WPR7"
ORIGIN
1 mnisafkian klitgqgaie qlsaeltrln vknplivtda vlvqsgtvdl alaqlggrcy
61 gifdqvkpep eiaivedctr ayregnhdgl iavgggsaid iakgvavfag hegplaelfg
121 vdlvkrkgpv liaipttagt gsevtnvaif sdtqaklkkg ivsdyllpnv
//
LOCUS XP_009312554 392 aa linear INV 09-JUN-2015
DEFINITION alcohol dehydrogenase [Trypanosoma grayi].
ACCESSION XP_009312554
VERSION XP_009312554.1
DBLINK BioProject: PRJNA258390
BioSample: SAMN02726834
DBSOURCE REFSEQ: accession XM_009314279.1
KEYWORDS RefSeq.
SOURCE Trypanosoma grayi
ORGANISM Trypanosoma grayi
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae;
Trypanosoma.
REFERENCE 1 (residues 1 to 392)
AUTHORS Kelly,S., Ivens,A.C., Manna,P.T., Gibson,W. and Field,M.C.
TITLE A draft genome for the African crocodilian trypanosome Trypanosoma
grayi
JOURNAL Unpublished
REFERENCE 2 (residues 1 to 392)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (09-JUN-2015) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 392)
AUTHORS Kelly,S., Ivens,A.C., Manna,P.T., Gibson,W. and Field,M.C.
TITLE Direct Submission
JOURNAL Submitted (09-JUN-2014) University of Edinburgh, Kings Buildings,
Mayfield Rd, Edinburgh EH9 3JT, United Kingdom
REFERENCE 4 (residues 1 to 392)
AUTHORS Kelly,S., Ivens,A.C., Manna,P.T., Gibson,W. and Field,M.C.
TITLE Direct Submission
JOURNAL Submitted (12-MAY-2014) University of Edinburgh, Kings Buildings,
Mayfield Rd, Edinburgh EH9 3JT, United Kingdom
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KEG09212.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..392
/organism="Trypanosoma grayi"
/strain="ANR4"
/host="Crocodylus niloticus"
/db_xref="taxon:71804"
/country="Gambia"
/collection_date="1990"
/note="in vitro culture"
Protein 1..392
/product="alcohol dehydrogenase"
/calculated_mol_wt=41394
Region 12..389
/region_name="LPO"
/note="Lactadehyde:propanediol oxidoreductase (LPO)
catalyzes the interconversion between L-lactaldehyde and
L-1,2-propanediol in Escherichia coli and other
enterobacteria; cd08176"
/db_xref="CDD:173935"
Site order(18..22,180,223,254)
/site_type="other"
/note="dimer interface [polypeptide binding]"
/db_xref="CDD:173935"
Site order(47,106..108,147..148,151,160,169,188,196,203,207,
272,286)
/site_type="active"
/db_xref="CDD:173935"
Site order(203,207,272,286)
/site_type="metal-binding"
/note="metal binding site [ion binding]"
/db_xref="CDD:173935"
CDS 1..392
/locus_tag="DQ04_05601010"
/coded_by="XM_009314279.1:1..1179"
/inference="protein motif:Gene3D:1.20.1090.10"
/inference="protein motif:Gene3D:3.40.50.1970"
/inference="protein motif:PANTHER:PTHR11496"
/inference="protein motif:ProSitePatterns:PS00060"
/inference="protein motif:ProSitePatterns:PS00913"
/inference="protein motif:SUPERFAMILY:SSF56796"
/note="automatic annotation, product description inferred
from BLASTP similarity;
predicted domains; G3DSA:1.20.1090.10: Dehydroquinate
synthase-like - alpha domain|aa:194-392|eval:1.6E-78;
G3DSA:3.40.50.1970: -|aa:13-193|eval:2.6E-55; PTHR11496:
alcohol dehydrogenase|aa:14-392|eval:6.8E-134;
PTHR11496:SF46: NA|aa:14-392|eval:6.8E-134; PF00465:
Iron-containing alcohol
dehydrogenase|aa:18-384|eval:9.2E-119; PS00060:
Iron-containing alcohol dehydrogenases signature
2.|aa:269-289|eval:-; PS00913: Iron-containing alcohol
dehydrogenases signature 1.|aa:182-210|eval:-; SSF56796:
Dehydroquinate synthase-like|aa:13-391|eval:1.07E-127;
75pc ID to alcohol dehydrogenase [Trypanosoma cruzi strain
CL Brener|protein GI:71660317], bitscore:609;
75pc ID to alcohol dehydrogenase [Trypanosoma cruzi strain
CL Brener|protein GI:71664570], bitscore:608;
75pc ID to alcohol dehydrogenase [Trypanosoma cruzi
Dm28c|protein GI:557865642], bitscore:606;
75pc ID to alcohol dehydrogenase, putative [Trypanosoma
cruzi|protein GI:407846774], bitscore:605;
75pc ID to alcohol dehydrogenase, putative [Trypanosoma
cruzi marinkellei|protein GI:407407457], bitscore:603;
60pc ID to Iron-containing alcohol dehydrogenase
[Azotobacter vinelandii DJ|protein GI:226942945],
bitscore:485;
61pc ID to Iron-containing alcohol dehydrogenase
[Pseudomonas stutzeri CCUG 29243|protein GI:392419684],
bitscore:482;
60pc ID to hypothetical protein [Pseudomonas
aeruginosa|protein GI:553769844], bitscore:479;
60pc ID to alcohol dehydrogenase [Pseudomonas
chloritidismutans|protein GI:557813029], bitscore:478;
60pc ID to alcohol dehydrogenase [Pseudomonas stutzeri
RCH2|protein GI:431925866], bitscore:478;
60pc ID to alcohol dehydrogenase [Vibrio
sinaloensis|protein GI:495353733], bitscore:478;
60pc ID to alcohol dehydrogenase [Pseudomonas|protein
GI:495300969], bitscore:477;
60pc ID to alcohol dehydrogenase [Photobacterium profundum
SS9|protein GI:54309683], bitscore:477;
60pc ID to alcohol dehydrogenase [Photobacterium
profundum|protein GI:493275300], bitscore:477;
60pc ID to alcohol dehydrogenase [Pseudomonas
stutzeri|protein GI:489376355], bitscore:476;
60pc ID to Alcohol dehydrogenase [Photobacterium sp.
AK15|protein GI:494726045], bitscore:474"
/db_xref="GeneID:20384556"
/db_xref="InterPro:IPR001670"
/db_xref="InterPro:IPR018211"
/db_xref="PFAM:PF00465"
ORIGIN
1 mlrathlnaa asaffiprvs ylgvgaldna mdkvkllgfk kpllvsdagi aksgvldnvv
61 srlkakcqme pviftdvnpn ptvhnveegl allnskacdc iislgggspq dcakgialvk
121 tnggtihdye gldkaakdqf pivainttag tasemtrfav itdekrhtkm viatdtstpl
181 maindaelmv gqppsltaat gmdalthave ayvsvgaspi tdtcalqamq likqhlknav
241 engkdlvare gmcyaeflag mafnsaglgy vhamahqlgg fynlphgvcn aillphveey
301 natvcahrlr dvglrlgvit tgmpekdaad aaltairqls revgiprgfk elgmlekdip
361 tlaeaalkdi caaanprqgs kedvmeiyra al
//
LOCUS ADY59640 436 aa linear BCT 10-SEP-2019
DEFINITION Alcohol dehydrogenase [Rubinisphaera brasiliensis DSM 5305].
ACCESSION ADY59640
VERSION ADY59640.1
DBLINK BioProject: PRJNA47863
BioSample: SAMN00103628
DBSOURCE accession CP002546.1
KEYWORDS .
SOURCE Rubinisphaera brasiliensis DSM 5305
ORGANISM Rubinisphaera brasiliensis DSM 5305
Bacteria; Planctomycetes; Planctomycetia; Planctomycetales;
Planctomycetaceae; Rubinisphaera.
REFERENCE 1 (residues 1 to 436)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Pagani,I., Ivanova,N.,
Ovchinnikova,G., Lu,M., Detter,J.C., Han,C., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Tindall,B., Pomrenke,H.G., Brambilla,E., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Planctomyces brasiliensis DSM 5305
JOURNAL Unpublished
REFERENCE 2 (residues 1 to 436)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Pagani,I., Ivanova,N.,
Ovchinnikova,G., Lu,M., Detter,J.C., Han,C., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Tindall,B., Pomrenke,H.G., Brambilla,E., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (22-FEB-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..436
/organism="Rubinisphaera brasiliensis DSM 5305"
/strain="DSM 5305"
/isolation_source="water from a salt pit"
/culture_collection="DSM:5305"
/type_material="type strain of Rubinisphaera brasiliensis"
/db_xref="taxon:756272"
/country="Brazil: Lagoa Vermelha"
/lat_lon="28.210 S 51.526 W"
/collection_date="1990"
/collected_by="H. Schlesner"
Protein 1..436
/product="Alcohol dehydrogenase"
/EC_number="1.1.1.1"
Region 59..434
/region_name="EutG"
/note="Alcohol dehydrogenase, class IV [Energy production
and conversion]; COG1454"
/db_xref="CDD:224371"
Site order(92,150..152,155,158,191..192,194,213..214,232,240,
247,251,316,320,330)
/site_type="active"
/db_xref="CDD:173961"
Site order(247,251,316,330)
/site_type="metal-binding"
/note="metal binding site [ion binding]"
/db_xref="CDD:173961"
CDS 1..436
/locus_tag="Plabr_2036"
/coded_by="complement(CP002546.1:2407311..2408621)"
/note="COGs: COG1454 Alcohol dehydrogenase class IV;
InterPro IPR001670;
KEGG: psl:Psta_4501 iron-containing alcohol dehydrogenase;
PFAM: Alcohol dehydrogenase, iron-type;
PRIAM: Alcohol dehydrogenase;
SPTR: Putative iron alcohol dehydrogenase;
PFAM: Iron-containing alcohol dehydrogenase"
/transl_table=11
ORIGIN
1 mavalrptph rklglrhdli dqspwltdef isipparria vstplsstsv vteslsfdfs
61 latrivsgpg tinrlgelvs ayggsrvliv tdkglsaagh drravesiea aghvafihdd
121 vspnpttddv eravtaarnh eidflvglgg gssmdcakga nfvlsnggrm edywgvgkat
181 kpmlpmiaip ttagtgseaq sfalianaqt hmkmacgdkk aaarvaildp eltmtmprsv
241 aavtavdals haletfvttk rnaasslfsq qawklltngf prifqdeadl earhqmllga
301 hwagaaieqs mlgathalan plsahfntvh gvaigimlph virfngpvag klygqlaewa
361 glcdadhpta vdqlatyvse lvamaglpgt leaegvkrsl fptlakeaaq qwtgsfnpre
421 vqpelmqely esawte
//
LOCUS AEE14926 389 aa linear BCT 08-JAN-2015
DEFINITION Alcohol dehydrogenase [Thermodesulfobium narugense DSM 14796].
ACCESSION AEE14926
VERSION AEE14926.1
DBLINK BioProject: PRJNA46673
BioSample: SAMN00713612
DBSOURCE accession CP002690.1
KEYWORDS .
SOURCE Thermodesulfobium narugense DSM 14796
ORGANISM Thermodesulfobium narugense DSM 14796
Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales;
Thermodesulfobiaceae; Thermodesulfobium.
REFERENCE 1 (residues 1 to 389)
AUTHORS Lucas,S., Han,J., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S.,
Peters,L., Kyrpides,N., Mavromatis,K., Pagani,I., Ivanova,N.,
Ovchinnikova,G., Zhang,X., Saunders,L., Detter,J.C., Tapia,R.,
Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Schroeder,M.,
Brambilla,E., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Thermodesulfobium narugense DSM 14796
JOURNAL Unpublished
REFERENCE 2 (residues 1 to 389)
AUTHORS Lucas,S., Han,J., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S.,
Peters,L., Kyrpides,N., Mavromatis,K., Pagani,I., Ivanova,N.,
Ovchinnikova,G., Zhang,X., Saunders,L., Detter,J.C., Tapia,R.,
Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Schroeder,M.,
Brambilla,E., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (26-APR-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..389
/organism="Thermodesulfobium narugense DSM 14796"
/strain="DSM 14796"
/isolation_source="hot spring"
/culture_collection="DSM:14796"
/type_material="type strain of Thermodesulfobium
narugense"
/db_xref="taxon:747365"
/country="Japan: Narugo"
/lat_lon="38.743435 N 140.71658 E"
/note="type strain of Thermodesulfobium narugense"
Protein 1..389
/product="Alcohol dehydrogenase"
/EC_number="1.1.1.1"
Region 10..386
/region_name="DHQ_Fe-ADH"
/note="Dehydroquinate synthase-like (DHQ-like) and
iron-containing alcohol dehydrogenases (Fe-ADH); cl02872"
/db_xref="CDD:295526"
Site order(45,103..105,108,111,144..145,147,166..167,185,193,
200,204,269,273,283)
/site_type="active"
/db_xref="CDD:173927"
Site order(45,103..105,144..145,147,185,283)
/site_type="other"
/note="NAD binding site [chemical binding]"
/db_xref="CDD:173927"
Site order(200,269,283)
/site_type="metal-binding"
/note="metal binding site [ion binding]"
/db_xref="CDD:173927"
CDS 1..389
/locus_tag="Thena_1309"
/coded_by="CP002690.1:1360680..1361849"
/note="COGs: COG1454 Alcohol dehydrogenase class IV;
InterPro IPR001670;
KEGG: mvn:Mevan_0143 iron-containing alcohol
dehydrogenase;
PFAM: Alcohol dehydrogenase, iron-type;
PRIAM: Alcohol dehydrogenase;
SPTR: Iron-containing alcohol dehydrogenase;
IMG reference gene:2504784719;
PFAM: Iron-containing alcohol dehydrogenase"
/transl_table=11
/db_xref="InterPro:IPR001670"
/db_xref="InterPro:IPR018211"
/db_xref="InterPro:IPR023000"
ORIGIN
1 mskdksmyki skfvapefif gvdsieyvkr yiknfsltsp ivitdhgllk aswaknifkq
61 leeinieyci fdnitenpkd yeveeiakvi rscncdsiia vgggsvidaa kaagimctnp
121 gtirdyegid kithpmppii cvpttcgssa dvsqfaiitn sderykmaiv sksltpdisi
181 idpktlitlp eellistsld althaiesyi slgsspitdm fslkaiklif etlpkaakdp
241 kninyledlm laslmaglsf snaslgmvha iahsiggykd irhgtcnail lesvidfnyl
301 yaayrydkis eslgyeikdl nevdrkkili dsikelkrki gfnitlkdld lkeeeidiia
361 khavndpcil tnpvmptiee vkeiierni
//
LOCUS ADY55933 392 aa linear BCT 08-JAN-2015
DEFINITION Alcohol dehydrogenase [Syntrophobotulus glycolicus DSM 8271].
ACCESSION ADY55933
VERSION ADY55933.1
DBLINK BioProject: PRJNA38111
BioSample: SAMN00216969
DBSOURCE accession CP002547.1
KEYWORDS .
SOURCE Syntrophobotulus glycolicus DSM 8271
ORGANISM Syntrophobotulus glycolicus DSM 8271
Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae;
Syntrophobotulus.
REFERENCE 1 (residues 1 to 392)
AUTHORS Han,C., Mwirichia,R., Chertkov,O., Held,B., Lapidus,A., Nolan,M.,
Lucas,S., Hammon,N., Deshpande,S., Cheng,J.F., Tapia,R.,
Goodwin,L., Pitluck,S., Huntemann,M., Liolios,K., Ivanova,N.,
Pagani,I., Mavromatis,K., Ovchinikova,G., Pati,A., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Brambilla,E.M., Rohde,M.,
Spring,S., Sikorski,J., Goker,M., Woyke,T., Bristow,J., Eisen,J.A.,
Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and
Detter,J.C.
TITLE Complete genome sequence of Syntrophobotulus glycolicus type strain
(FlGlyR)
JOURNAL Stand Genomic Sci 4 (3), 371-380 (2011)
PUBMED 21886864
REFERENCE 2 (residues 1 to 392)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L.,
Pitluck,S., Kyrpides,N., Mavromatis,K., Pagani,I., Ivanova,N.,
Mikhailova,N., Chertkov,O., Held,B., Detter,J.C., Tapia,R., Han,C.,
Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P.,
Woyke,T., Wu,D., Spring,S., Schroeder,M., Brambilla,E., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (22-FEB-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..392
/organism="Syntrophobotulus glycolicus DSM 8271"
/strain="DSM 8271"
/isolation_source="syntrophic coculture FlGlyM (DSM 6945)
isolated from anoxic sewage sludge"
/culture_collection="DSM:8271"
/type_material="type strain of Syntrophobotulus
glycolicus"
/db_xref="taxon:645991"
/country="Germany"
/collection_date="1996"
/collected_by="M. Friedrich and B. Schink"
Protein 1..392
/product="Alcohol dehydrogenase"
/EC_number="1.1.1.1"
Region 5..388
/region_name="Fe-ADH1"
/note="Iron-containing alcohol dehydrogenases-like;
cd08185"
/db_xref="CDD:173944"
Site order(36,96..98,101,104,142..143,145,164..165,183,191,198,
202,267,271,282)
/site_type="active"
/note="putative active site [active]"
/db_xref="CDD:173944"
Site order(198,202,267,282)
/site_type="metal-binding"
/note="metal binding site [ion binding]"
/db_xref="CDD:173944"
CDS 1..392
/locus_tag="Sgly_1635"
/coded_by="CP002547.1:1667526..1668704"
/note="COGs: COG1454 Alcohol dehydrogenase class IV;
InterPro IPR001670;
KEGG: csc:Csac_0711 iron-containing alcohol dehydrogenase;
PFAM: Alcohol dehydrogenase, iron-type;
PRIAM: Alcohol dehydrogenase;
SPTR: Iron-containing alcohol dehydrogenase;
PFAM: Iron-containing alcohol dehydrogenase"
/transl_table=11
ORIGIN
1 mkfnynmptk ilfgpgklns lkkeklpgkk alivisagns mksngyldrv ieilnskgik
61 avifdqilpn pvkahvmega kiavreecdf viglgggssi dsaksiavma knpgdywdyi
121 sggtgkgkpv engalpvvai tttagtgtea dpwtvitked tkekigfgna dtfpvlsvvd
181 pelmltvpkk ltayqgfdaf fhategyiak ianpfsdlya lksieliary lpravkdgnd
241 leartqvala ntlsgfvest ssctsehsme halsayypdl phgaglimls eayytffask
301 vperfismae amgvnvdllp enerpmafvq alvklqqdce vdglkmsdyg ikreeitlla
361 dharetmggl ftvdpyslsl eetteimkna yk
//
LOCUS AEV99900 382 aa linear BCT 17-JUL-2013
DEFINITION Alcohol dehydrogenase [Niastella koreensis GR20-10].
ACCESSION AEV99900
VERSION AEV99900.1
DBLINK BioProject: PRJNA42711
BioSample: SAMN02232043
DBSOURCE accession CP003178.1
KEYWORDS .
SOURCE Niastella koreensis GR20-10
ORGANISM Niastella koreensis GR20-10
Bacteria; Bacteroidetes; Chitinophagia; Chitinophagales;
Chitinophagaceae; Niastella.
REFERENCE 1 (residues 1 to 382)
AUTHORS Lucas,S., Han,J., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S.,
Peters,L., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Davenport,K., Saunders,E., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Tindall,B., Pomrenke,H., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Niastella koreensis GR20-10
JOURNAL Unpublished
REFERENCE 2 (residues 1 to 382)
AUTHORS Lucas,S., Han,J., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S.,
Peters,L., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N.,
Davenport,K., Saunders,E., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Tindall,B., Pomrenke,H., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (06-DEC-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..382
/organism="Niastella koreensis GR20-10"
/strain="GR20-10"
/isolation_source="soil cultivated with Korean ginseng"
/type_material="type strain of Niastella koreensis"
/db_xref="taxon:700598"
/country="South Korea: Yeongju region"
/lat_lon="36.81 N 128.62 E"
/collected_by="S. W. Kwon"
Protein 1..382
/product="Alcohol dehydrogenase"
/EC_number="1.1.1.1"
Region 10..378
/region_name="DHQ_Fe-ADH"
/note="Dehydroquinate synthase-like (DHQ-like) and
iron-containing alcohol dehydrogenases (Fe-ADH); cl02872"
/db_xref="CDD:322118"
Site order(40,96..98,101,104,137..138,140,159..160,178,186,193,
197,262,266,276)
/site_type="active"
/db_xref="CDD:173927"
Site order(40,96..98,137..138,140,178,276)
/site_type="other"
/note="NAD binding site [chemical binding]"
/db_xref="CDD:173927"
Site order(193,262,276)
/site_type="metal-binding"
/note="metal binding site [ion binding]"
/db_xref="CDD:173927"
CDS 1..382
/locus_tag="Niako_3600"
/coded_by="complement(CP003178.1:4520693..4521841)"
/note="PFAM: Iron-containing alcohol dehydrogenase;
COGs: COG1454 Alcohol dehydrogenase class IV;
InterPro IPR001670;
KEGG: psn:Pedsa_0327 iron-containing alcohol
dehydrogenase;
PFAM: Alcohol dehydrogenase, iron-type;
PRIAM: Alcohol dehydrogenase;
SPTR: Iron-containing alcohol dehydrogenase"
/transl_table=11
/db_xref="InterPro:IPR001670"
ORIGIN
1 mqdllkisfp gklvfgkntl eqlpdevtal sctralviti tpllgqlksf vnkleaggvq
61 vqtntsivne psfaevqqll qevkgfnpdv vigigggsvl dvakiiaall eneqglkdiv
121 gigflkrrpk klicmpttsg tgsevspnsi lvdetdnqkk giispflvpd ivyvdplltm
181 gvppaitaat gidalthcle aytnlfahpf idvyayegmr liaanivqav kngndeeart
241 qvamgsllgg fclgpvntag vhalsyplgs ayhlahglsn alllpyvmef syvaapkrya
301 dvavalgcer eaddvktalk giekirslis acgiparlrd vgipkeaipq mavdamkitr
361 llknnprpit gkdaidifna ay
//
LOCUS NP_001315822 380 aa linear PLN 05-AUG-2019
DEFINITION alcohol dehydrogenase [Malus domestica].
ACCESSION NP_001315822 XP_008364888
VERSION NP_001315822.1
DBSOURCE REFSEQ: accession NM_001328893.1
KEYWORDS RefSeq.
SOURCE Malus domestica (apple)
ORGANISM Malus domestica
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae;
Maleae; Malus.
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from Z48234.1.
On Jun 28, 2016 this sequence version replaced XP_008364888.1.
##Evidence-Data-START##
Transcript exon combination :: Z48234.1, ES790004.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMEA104369049, SAMN02444370
[ECO:0000348]
##Evidence-Data-END##
FEATURES Location/Qualifiers
source 1..380
/organism="Malus domestica"
/db_xref="taxon:3750"
/chromosome="10"
/map="10"
Protein 1..380
/product="alcohol dehydrogenase"
/EC_number="1.1.1.1"
/calculated_mol_wt=41278
Region 1..378
/region_name="PLN02740"
/note="Alcohol dehydrogenase-like"
/db_xref="CDD:178341"
Region 9..377
/region_name="alcohol_DH_plants"
/note="Plant alcohol dehydrogenase; cd08301"
/db_xref="CDD:176261"
Site order(48,50,70,96,144,178,298,322)
/site_type="other"
/note="substrate binding site [chemical binding]"
/db_xref="CDD:176261"
Site order(48,50,70,178)
/site_type="other"
/note="catalytic Zn binding site [ion binding]"
/db_xref="CDD:176261"
Site order(49..50,178,182,203..207,227..228,232,272..273,
277..278,296..297,321..323,373)
/site_type="other"
/note="NAD binding site [chemical binding]"
/db_xref="CDD:176261"
CDS 1..380
/gene="LOC103428551"
/gene_synonym="adh; Adh1-1"
/coded_by="NM_001328893.1:95..1237"
/db_xref="GeneID:103428551"
ORIGIN
1 msntagqvir craavaweag kplvieevev appqanevri kilftslcht dvyfweakgq
61 nplfpriygh eaggivesvg egvtdlkagd hvlpvftgec kdcahcksee snmcdllrin
121 tdrgvmlsdg ksrfsikgkp iyhfvgtstf seytvvhvgc lakinpsapl dkvcllscgi
181 stglgatlnv akpkkgstva vfglgavgla aaegarlsga sriigvdlhs drfeeakkfg
241 vtefvnpkah ekpvqeviae ltnrgvdrsi ectgsteami safecvhdgw gvavlvgvph
301 kdavfkthpv nflnertlkg tffgnyktrt dipsvvekym nkelelekfi thkvpfsein
361 kafeymlkge glrciirmee
//