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Run pipeline on Minerva Mount Sinai's HPC

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Li Shen edited this page Aug 6, 2014 · 7 revisions

#####Load ruffus, drmaa module load python py_packages

#####Load phantompeak module load R phantompeaks

#####Load other dependencies module load bowtie fastqc samtools igvtools ngsplot

#####The -m option There are two partitions on Minerva: manda and mothra. According to Sinai HPC, the Minerva HPC complex is comprised of two major partitions:

  • The manda partition which is composed of 120 AMD nodes each with 64 cores and 256GB of memory
  • The mothra partition which is composed of 209 Intel nodes each with 12 cores and 64GB of memory
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