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Copy pathbrca_example_meta.tsv
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brca_example_meta.tsv
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"patient" "shortLetterCode" "vital_status" "age_at_initial_pathologic_diagnosis" "BRCA_Subtype_PAM50" "pathologic_stage" "BRCA_Pathology" "days_to_death" "days_to_last_followup" "er_status_by_ihc" "her2_status_by_ihc" "pr_status_by_ihc"
"TCGA.BH.A1F5.01A.12R.A13Q.07" "TCGA-BH-A1F5" "TP" "Dead" 62 "LumA" "Stage_II" "IDC" 2712 NA "Positive" "Negative" "Positive"
"TCGA.BH.A18N.01A.11R.A12D.07" "TCGA-BH-A18N" "TP" "Dead" 88 "LumA" "Stage_II" "IDC" 1148 NA "Positive" "Negative" "Positive"
"TCGA.A2.A1G0.01A.11R.A13Q.07" "TCGA-A2-A1G0" "TP" "Alive" 49 "LumA" "Stage_II" "IDC" NA 616 "Positive" "Equivocal" "Positive"
"TCGA.A8.A08T.01A.21R.A00Z.07" "TCGA-A8-A08T" "TP" "Dead" 64 "LumA" "Stage_IV" "IDC" 3409 2830 "Positive" "Positive" "Positive"
"TCGA.A2.A0CS.01A.11R.A115.07" "TCGA-A2-A0CS" "TP" "Dead" 73 "LumA" "Stage_IV" "IDC" 2348 2298 "Positive" "Equivocal" "Positive"
"TCGA.E2.A14S.01A.11R.A12D.07" "TCGA-E2-A14S" "TP" "Alive" 65 "LumB" "Stage_I" "IDC" NA 1009 "Positive" "Equivocal" "Positive"
"TCGA.C8.A1HF.01A.11R.A137.07" "TCGA-C8-A1HF" "TP" "Alive" 48 "Her2" "Stage_II" "IDC" NA 332 "Negative" "Positive" "Positive"
"TCGA.C8.A12X.01A.11R.A115.07" "TCGA-C8-A12X" "TP" "Alive" 62 "LumA" "Stage_II" "Other" NA 385 "Positive" "Negative" "Positive"
"TCGA.B6.A2IU.01A.32R.A18M.07" "TCGA-B6-A2IU" "TP" "Alive" 62 "LumA" "Stage_II" "ILC" NA 5176 "Positive" "[Not Evaluated]" "Positive"
"TCGA.A8.A07S.01A.11R.A034.07" "TCGA-A8-A07S" "TP" "Alive" 73 "LumB" "Stage_II" "Mixed" NA 243 "Positive" "Negative" "Negative"
"TCGA.EW.A1PB.01A.11R.A144.07" "TCGA-EW-A1PB" "TP" "Alive" 70 "Basal" "Stage_III" "IDC" NA 608 "Negative" "Negative" "Negative"
"TCGA.BH.A0EE.01A.11R.A034.07" "TCGA-BH-A0EE" "TP" "Alive" 68 "Her2" "Stage_II" "Other" NA 943 "Negative" "Positive" "Negative"
"TCGA.BH.A0E6.01A.11R.A034.07" "TCGA-BH-A0E6" "TP" "Alive" 69 "Basal" "Stage_I" "IDC" NA 293 "Negative" "Equivocal" "Negative"
"TCGA.B6.A0IB.01A.11R.A034.07" "TCGA-B6-A0IB" "TP" "Dead" 64 "LumB" "Stage_IV" "IDC" 3941 NA "Positive" "[Not Evaluated]" "Positive"
"TCGA.BH.A0B1.01A.12R.A056.07" "TCGA-BH-A0B1" "TP" "Alive" 66 "LumA" "Stage_II" "IDC" NA 1148 "Positive" "Negative" "Positive"
"TCGA.BH.A203.01A.12R.A169.07" "TCGA-BH-A203" "TP" "Dead" 78 "Her2" "Stage_II" "IDC" 1174 NA "[Not Evaluated]" "[Not Evaluated]" "[Not Evaluated]"
"TCGA.A2.A4S2.01A.12R.A266.07" "TCGA-A2-A4S2" "TP" "Alive" 62 "LumA" "Stage_III" "ILC" NA 643 "Positive" "Negative" "Positive"
"TCGA.A1.A0SH.01A.11R.A084.07" "TCGA-A1-A0SH" "TP" "Alive" 39 "LumA" "Stage_II" "Mixed" NA 1437 "Negative" "Equivocal" "Positive"
"TCGA.OL.A6VO.01A.12R.A33J.07" "TCGA-OL-A6VO" "TP" "Alive" 43 "Basal" "Stage_I" NA NA 858 "Negative" "Negative" "Negative"
"TCGA.AO.A0J9.01A.11R.A034.07" "TCGA-AO-A0J9" "TP" "Alive" 61 "LumA" "Stage_III" NA NA 1613 "Positive" "[Not Evaluated]" "Positive"
"TCGA.BH.A0AY.11A.23R.A089.07" "TCGA-BH-A0AY" "NT" "Alive" 62 "LumA" "Stage_II" "IDC" NA 777 "Positive" "Negative" "Positive"
"TCGA.BH.A1FH.11B.42R.A13Q.07" "TCGA-BH-A1FH" "NT" "Dead" 47 "LumA" "Stage_IV" "IDC" 1034 NA "Positive" "[Not Evaluated]" "Negative"
"TCGA.BH.A0DV.11A.22R.A12P.07" "TCGA-BH-A0DV" "NT" "Alive" 54 "LumA" "Stage_III" "Mixed" NA 2064 "Positive" "Negative" "Positive"
"TCGA.GI.A2C8.11A.22R.A16F.07" "TCGA-GI-A2C8" "NT" "Alive" 63 "LumA" "Stage_III" "IDC" NA 225 "Positive" "Negative" "Positive"
"TCGA.E9.A1RC.11A.33R.A157.07" "TCGA-E9-A1RC" "NT" "Alive" 56 "LumA" "Stage_III" "IDC" NA 1224 "[Not Evaluated]" "[Not Evaluated]" "[Not Evaluated]"
"TCGA.BH.A0C0.11A.21R.A089.07" "TCGA-BH-A0C0" "NT" "Alive" 62 "LumB" "Stage_II" "IDC" NA 1270 "Positive" "Equivocal" "Positive"
"TCGA.BH.A1FC.11A.32R.A13Q.07" "TCGA-BH-A1FC" "NT" "Dead" 78 "Basal" "Stage_II" "Other" 3472 NA "Negative" "Negative" "Negative"
"TCGA.BH.A1EW.11B.33R.A137.07" "TCGA-BH-A1EW" "NT" "Dead" 38 "LumA" "Stage_II" "IDC" 1694 NA "Negative" "Negative" "Negative"
"TCGA.E2.A1LB.11A.22R.A144.07" "TCGA-E2-A1LB" "NT" "Alive" 41 "Her2" "Stage_II" "IDC" NA 2306 "Negative" "Positive" "Negative"
"TCGA.BH.A0B5.11A.23R.A12P.07" "TCGA-BH-A0B5" "NT" "Alive" 40 "LumA" "Stage_III" "ILC" NA 2136 "Positive" "Negative" "Positive"
"TCGA.BH.A0H7.11A.13R.A089.07" "TCGA-BH-A0H7" "NT" "Alive" 65 "LumA" "Stage_III" "IDC" NA 702 "Positive" "Negative" "Positive"
"TCGA.A7.A13E.11A.61R.A12P.07" "TCGA-A7-A13E" "NT" "Dead" 62 "Basal" "Stage_II" "IDC" 614 326 "Positive" "Equivocal" "Negative"
"TCGA.BH.A18Q.11A.34R.A12D.07" "TCGA-BH-A18Q" "NT" "Dead" 56 "Basal" "Stage_II" "IDC" 1692 NA "Negative" "Positive" "Negative"
"TCGA.BH.A209.11A.42R.A157.07" "TCGA-BH-A209" "NT" "Dead" 77 "LumB" "Stage_I" "Other" 3959 NA "Positive" "[Not Evaluated]" "Positive"
"TCGA.BH.A1FU.11A.23R.A14D.07" "TCGA-BH-A1FU" "NT" "Dead" 44 "Normal" "Stage_I" "Other" 1688 NA "Negative" "[Not Evaluated]" "Negative"
"TCGA.BH.A1FR.11B.42R.A13Q.07" "TCGA-BH-A1FR" "NT" "Dead" 73 "LumA" "Stage_III" "Other" 1642 NA "Positive" "[Not Evaluated]" "Positive"
"TCGA.BH.A1FG.11B.12R.A13Q.07" "TCGA-BH-A1FG" "NT" "Dead" 88 "LumA" "Stage_I" "IDC" 3736 NA "Positive" "Negative" "Positive"
"TCGA.BH.A1FB.11A.33R.A13Q.07" "TCGA-BH-A1FB" "NT" "Dead" 60 "LumA" "Stage_II" "IDC" 3669 NA "Positive" "Negative" "Positive"
"TCGA.BH.A0DO.11A.22R.A12D.07" "TCGA-BH-A0DO" "NT" "Alive" 78 "LumA" "Stage_I" "IDC" NA 1644 "Positive" "Negative" "Positive"
"TCGA.BH.A18M.11A.33R.A12D.07" "TCGA-BH-A18M" "NT" "Dead" 39 "LumA" "Stage_III" "Other" 2207 NA "Positive" "Positive" "Positive"