Randomisations - cache args at the run_analysis level

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Existing randomisations override any user specified analysis arguments.  This 
is currently done at the level of the randomisation method, rather than at the 
run_analysis level.  

This has worked well up until now.  However, we now have the capability to also 
perturb trees (issue #389) and group properties (issue #388).  These are 
handled at the run_analysis level.  

An implementation detail is that the user can specify certain arguments that 
should not be overridden.  This means we need some metadata for the 
run_analysis sub.  The simplest approach is probably for any arguments 
specified by the rand_* subs to not be overridden.  

Original issue reported on code.google.com by shawnlaffan on 16 Jul 2013 at 11:05

• Blocking: Randomisations - add option to control group properties #388