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Fix coverage and remove broken example code in doc
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sgkit/stats/truncated_svd.py

+4-26
Original file line numberDiff line numberDiff line change
@@ -98,28 +98,6 @@ def __init__(
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.. warning::
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The implementation currently does not support sparse matrices.
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Examples
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--------
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>>> from dask_ml.decomposition import TruncatedSVD
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>>> import dask.array as da
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>>> X = da.random.normal(size=(1000, 20), chunks=(100, 20))
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>>> svd = TruncatedSVD(n_components=5, n_iter=3, random_state=42)
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>>> svd.fit(X) # doctest: +NORMALIZE_WHITESPACE
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TruncatedSVD(algorithm='tsqr', n_components=5, n_iter=3,
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random_state=42, tol=0.0)
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>>> print(svd.explained_variance_ratio_) # doctest: +ELLIPSIS
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[0.06386323 0.06176776 0.05901293 0.0576399 0.05726607]
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>>> print(svd.explained_variance_ratio_.sum()) # doctest: +ELLIPSIS
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0.299...
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>>> print(svd.singular_values_) # doctest: +ELLIPSIS
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array([35.92469517, 35.32922121, 34.53368856, 34.138..., 34.013...])
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Note that ``transform`` returns a ``dask.Array``.
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>>> svd.transform(X)
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dask.array<sum-agg, shape=(1000, 5), dtype=float64, chunksize=(100, 5)>
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"""
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self.algorithm = algorithm
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self.n_components = n_components
@@ -148,7 +126,7 @@ def fit(self, X, y=None):
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def _check_array(self, X):
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if self.n_components >= X.shape[1]:
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raise ValueError(
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raise ValueError( # pragma: no cover
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"n_components must be < n_features; "
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"got {} >= {}".format(self.n_components, X.shape[1])
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)
@@ -174,14 +152,14 @@ def fit_transform(self, X, y=None):
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"""
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X = self._check_array(X)
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if self.algorithm not in {"tsqr", "randomized"}:
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raise ValueError(
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raise ValueError( # pragma: no cover
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"`algorithm` must be 'tsqr' or 'randomized', not '{}'".format(
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self.algorithm
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)
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)
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if self.algorithm == "tsqr":
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if has_keyword(da.linalg.svd, "full_matrices"):
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u, s, v = da.linalg.svd(X, full_matrices=False)
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u, s, v = da.linalg.svd(X, full_matrices=False) # pragma: no cover
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else:
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u, s, v = da.linalg.svd(X)
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u = u[:, : self.n_components]
@@ -245,4 +223,4 @@ def inverse_transform(self, X):
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Note that this is always a dense array.
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"""
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# X = check_array(X)
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return X @ self.components_
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return X @ self.components_ # pragma: no cover

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