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[WIP] User Story - Exploratory Statistics #5

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jerowe opened this issue Jul 22, 2020 · 2 comments
Open

[WIP] User Story - Exploratory Statistics #5

jerowe opened this issue Jul 22, 2020 · 2 comments
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@jerowe @daletovar

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jerowe commented Jul 22, 2020 •
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Before the PCA or PBS a scientist would complete several rounds of exploratory statistics and filtering.

  1. Look at distributions of the data
  2. Filter variants based on quality
  3. Subset genotypes based on previous variant statistics
  4. Filter samples (missingness)
  5. Subset genotypes based on previous sample statistics

Reference the Breaking down the PCA PR
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jerowe commented Jul 22, 2020 •
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  1. General exploratory statistics

  2. Variants Quality

  3. Filter Genotypes based on Variant Quality

  4. (and 5) Explore Sample Statistics

@jerowe jerowe self-assigned this Jul 22, 2020
@jerowe jerowe changed the title WIP User Story 1 - Exploratory Statistics WIP User Story - Exploratory Statistics Jul 22, 2020
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jerowe commented Jul 22, 2020

@daletovar this is shared between the PCA and PBS user stories.

@jerowe jerowe changed the title WIP User Story - Exploratory Statistics [WIP] User Story - Exploratory Statistics Jul 22, 2020
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