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title authors authorLinks affiliations translators translatorLinks date dataset abstract
新型冠状病毒(COVID-19)流行病学基因组分析状况报告2020-03-20.
Emma Hodcroft
Nicola Müller
Cassia Wagner
Misja Ilcisin
James Hadfield
Sidney M. Bell
Richard Neher
Trevor Bedford
Fred Hutch, Seattle, USA; Biozentrum, Basel, Switzerland; CZI, CA, USA
Derek 张卷卷
李雪莹
2020 March 19
这份报告使用了公开共享的2019新型冠状病毒(COVID-19)基因组数据来追踪疫情的传播,此报告将每周更新。
# 报告摘要

在这里,我们分析了723</tag>个公开共享的COVID-19基因组。通过将这些病毒基因组相互比较,我们可以推断COVID-19是如何在世界各地传播的。

我们在这份报告中强调,该病毒已被引入全球许多地区,并在各地传播。
为了了解COVID-19是否在当地传播以及传播到什么程度,以及疫情控制措施能如何减缓病毒传播,需要对当地的疫情动态有很好的认识,而这需要进行广泛的检测才能实现。
这突出了快速检测的重要性,并且要把重点放在降低本地疫情的传播速度上。

在本周的更新中,我们发现:  

* 证据表明,全球许多地区都出现了旅行引起的输入病例。
* 许多近期有输入性案例的地区将在4-8周的时间内看到疫情扩大。这些地区现在就应该有所准备。   
* 在许多最近实施了社交隔离的地区,预计短期内病例将继续增加,但新增病例数量可能会在中长期的时间内达到平台期并下降。
* 对新近感染者和已恢复病例的检测对于应对这一流行病将是至关重要的。

我们准备了一些值得一读的材料,让您了解COVID-19(2019冠状病毒病)及其致病病毒SARS-CoV-2(严重急性呼吸综合征冠状病毒2型)。 这些资料将使您更容易理解我们在本报告中提供的数据;如果您不熟悉系统进化树,我们建议先阅读如何解读系统进化树,并在阅读后再回到此页。


## 背景

<div>
  <a href="https://nextstrain.org/help/coronavirus/human-CoV"><img alt="microscopy image of coronaviruses" width="100" src="https://nextstrain.org/static/ncov_narrative-76cfd610d11ef708d213a3170de9519f.png"/> 冠状病毒的背景知识 </a>

  <a href="https://nextstrain.org/help/coronavirus/SARS-CoV-2"><img alt="illustration of a coronavirus" width="100" src="http://data.nextstrain.org/img_nCoV-CDC.jpg"/> 近期 COVID-19 疫情的背景 </a>

  <a href="https://nextstrain.org/narratives/trees-background/zh"><img alt="cartoon of a phylogenetic tree" width="100" src="http://data.nextstrain.org/img_toy_alignment_mini.png"/> 如何解读系统进化树 </a>
</div>

## 更多资料

* 维基百科上 COVID-19 疫情的概览[中文维基](https://zh.wikipedia.org/wiki/2019%E5%86%A0%E7%8B%80%E7%97%85%E6%AF%92%E7%97%85%E7%96%AB%E6%83%85)。
* 本报告所引用的所有病例统计来自[WHO](https://www.who.int/docs/default-source/coronaviruse/situation-reports/20200318-sitrep-58-covid-19.pdf?sfvrsn=20876712_2)截至2020年3月20日发布的数字。

我们目前有来自6大洲36个国家的样本序列。这是一项令人难以置信的壮举--在病毒大流行期间对一种未知的大型RNA病毒进行测序是很困难的,只有通过世界各地的科学家和医生令人难以置信的工作和及时共享数据才有可能。

虽然这些数据使我们能够推断出这场疫情的许多有用的特征并实时跟踪其传播,但需要强调的是,我们的结论受到现有数据的限制。 在全部病例中,只有一小部分患者接受了检测。在那些被测试的样本中,也只有一部分样本被测序。 具体哪些病例得到了检测和测序可能会因地理区域和时间的不同而有很大差异。 此外,对疫情进行系统发生树的重构总是有一定程度的不确定性。

让我们来看几个例子。

地图上显示来自南半球的序列很少。比如,在拉丁美洲25个WHO报告有确诊病例的国家中,我们只有4个国家的序列。这既不是因为COVID-19没有在这些地区传播,也不是因为理解这些病例不重要,而仅仅是因为我们没有从这些地区获得足够的数据。

在有些地区,比如荷兰,相对于病例总数来说,他们获得的序列数据非常多。

因此,在阅读这篇文章时,请记住地图上每个圆圈的大小表示的是该区域当前有多少数据可用,而不是该地区疫情爆发的真实数字。你可以阅读此页 来了解这种数据量的差异会如何影响我们对于疫情传播的推断。

确定病例在哪里感染,对于了解某个地区的疫情主要是与旅行有关,还是正在发生本地传播非常重要。序列数据可以帮助我们区分这两种情况。

这里可以看到用病例的(已知的)旅行史进行着色的系统发生树。我们可以看到中间有一条来自加拿大的序列(Canada/BC_78548/2020),该病例报告有欧洲旅行史。这条序列与欧洲的其他序列聚在一起,因此几乎可以肯定该病例是属于与旅行相关的感染。

将图拉远后,我们可以看到数据也并不总是与旅行史一致。

这里我们可以看到,几乎所有报告最近有伊朗旅行史的病例都集中在树的中间。

在树的顶端,我们还看到了一个有伊朗旅行史的加拿大病例,但这个序列没有与其他有伊朗旅行史的病例聚在一起,甚至都不接近。

当然,这个人完全有可能是被伊朗当地的另一个传播链所感染,但在获得更多数据之前,我们不能确认这一感染与旅行有关。

在这棵树上,我们在很多个分支中都看到来自不同国家的序列混杂在一起。 这表明人们不可避免的迁移活动已经将病毒带到了全球许多地方。

事实上,WHO已经报告 全世界195个国家中有159个国家有确诊病例。

然而,并不是所有的输入病例都会导致疫情的爆发。

从表面上来看,COVID-19可能像是突然爆发的。 可能对于许多人来说,这场疫情似乎是在一夜之间从一个世界其他地区的抽象问题变成了严重影响他们日常生活的事情。

但是,请记住疫情已经酝酿了一段时间。病毒并不一定是被更频繁地输入至新的地方,更可能的情况是,许多地方现在发现的本地疫情其实是好几周前输入的。

还没有发现本地疫情的地区应该现在就做好准备,开始检测,监控疫情。

# 输入病例是怎么导致疫情爆发的?

有时,输入病例不会导致继发病例或本地疫情的爆发--特别是在原发病例得到快速检测和隔离的情况下。
然而,更多的时候,病毒是在未被发现的情况下在当地人群中传播的,直到疫情达到相当大的规模。

下面是一个思维实验,展示了这种情况是如何在武汉发生的。y轴表示空间,x轴表示时间,阴影区域表示案例数。

"武汉的COVID-19病例从2019年11月左右的一个原发病例增加到2020年1月中旬的数千例,也就是在大约10周的时间里从最初的感染事件变成了广泛的社区传播。我们认为国与国之间的传播始于1月中旬。因此,从这个时间到3月下旬,我们有大约10周的关键时间来控制新生的疫情,以免它们发展扩大" [- Trevor Bedford](https://twitter.com/trvrb/status/1226241284207038464), 2020年2月

这些新的疫情可能会接着把病毒进一步传播到其他地方。

<img src="https://github.com/nextstrain/ncov/raw/master/figures/local-spark-expansion.jpeg" width="70%">


我们可以在华盛顿州的数据中看到一个明显的例子。 把光标移动到主枝的根部可以看到,该病毒很可能在2020年1月底至2月中旬期间传入该地区(方法)。

现在,在3月中旬(大约6周后),我们可以看到这一地区的本地疫情正处于全面爆发中。仅从序列数据来看,如果假设病毒种群呈指数级增长,我们估计倍增率为3-6天。

我们还可以看到一个例子,它可以说明一场一开始只是在本地爆发的疫情是如何输出至其他地点的。 靠近树顶的来自犹他州的样本(橙色)位于华盛顿州疫情的主要分支内。 这与病毒是从华盛顿州传输到犹他州的推断是一致的,尽管传播链中也可能有一个或几个中间步骤。

我们不能确定这次输入是否会导致犹他州发生本地的疫情。 但是,如果病毒在这些输入事件后真的继续传播了,我们预计将在接下来的4周内看到本地疫情发生。

这只是一个例子。 犹他州(或其他地区)可能还有其他的输入案例,因为没有被测序的原因,我们在树上是看不到的。 最重要的是,还没有发现本地疫情的地区应该现在就做好准备,开始检测,监控疫情。

按照同样的逻辑,很可能有许多我们还不知道的本地传播链存在。

这意味着,即使对于刚刚实施减少社交接触措施的地区,我们仍应预计在未来几周内病例数量会增加。 病例的增长并不表明这些措施不起作用。已经感染的人(可能还有他们的家庭成员)表现出症状、接受治疗和康复是需要时间的。我们还预计,随着检测覆盖人群的增加,报告的病例数量将会增加。

在这段时间内保持社交距离是至关重要的。如右图所示,干预措施到位后,病例数量会继续增加。但是,随着时间的推移,累积的病例数量将大大减少。

## 减少社交接触不会在一夜之间阻止所有新病例的产生,但随着时间的推移,它会大大减少病例数量和死亡人数
社交控制——也就是说,减少自己每天遇到的人的数量。这可能很有挑战性,但却能为整个社会的公共利益作出极大的贡献。
 如果每个人的日常接触减少25%,我们预计下个月的累计病例数量将减少50%([Klein et al., 2020-03-13](https://institutefordiseasemodeling.github.io/COVID-public/reports/Working%20paper%20%E2%80%93%20model-based%20estimates%20of%20COVID-19%20burden%20in%20King%20and%20Snohomish%20counties%20through%20April%207.pdf))。
<div>
  <img src="https://github.com/nextstrain/ncov/raw/master/figures/social-distancing-efficacy.png" width="70%">
</div>

  • 该病毒已多次传入全球许多地区.

- 我们在许多地区看到了本地传播的证据;除此之外,我们预计之前的输入已经为多起本地疫情的爆发埋下了伏笔,这些疫情将在未来几周内变得明显。
- 通过减少社交接触来控制本地疫情对以下方面至关重要: - #平缓疫情曲线(#FlattenTheCurve):防止医疗系统被许多同时发生的病例压垮 - 减少病例总数和死亡数 - 为治疗手段和疫苗的研发争取时间
# 你能做些什么
## ...个人可以采取的行动
* 大幅度减少每天接触的人数,风险人群尤其要这样做(例如老年人和有既往疾病的人)。
* 请记住,即使你不属于高风险人群,你周围的许多人也可能属于高危人群;遵循以上做法可以保护他人。
* 仔细洗手,要像“刚切完辣椒但是要换隐形眼镜”时一样洗手。
* 尽可能地待在家里,尤其是生病时;准备一些额外的补给,以备自我隔离。
* 如果你是雇主,请尽可能地鼓励员工在家办公。

## ...政府可以采取的行动  
* 推广覆盖大部分人群的免费检测。  
* 推行减少社交接触的措施。
* 拨款用于实施大范围的接触者追踪工作。  
* 在经济上支持受到上述措施影响的人(例如,小时工、老人或儿童的看护人员、小型企业等)。

我们要感谢参与此次疫情的所有科学家所做的令人惊叹和及时的工作,特别是那些在中国工作的科学家。 只有通过基因组数据和元数据的快速共享,才有可能进行这样的分析。


我们也感谢GISAID提供了上传和共享这些数据的平台。


非常感谢以下单位机构和实验室的慷慨分享:

* Arizona Department of Health Services
* Auckland Hospital
* BCCDC Public Health Laboratory
* Bamrasnaradura Hospital
* Beijing Institute of Microbiology and Epidemiology
* Bundeswehr Institute of Microbiology
* CNR Virus des Infections Respiratoires - France SUD
* CR&WISCO GENERAL HOSPITAL
* California Department of Health
* California Department of Public Health
* Center of Medical Microbiology, Virology, and Hospital Hygiene
* Center of Medical Microbiology, Virology, and Hospital Hygiene, University of Duesseldorf
* Centers for Disease Control, R.O.C. (Taiwan)
* Centre for Human and Zoonotic Virology (CHAZVY), College of Medicine University of Lagos/Lagos University Teaching Hospital (LUTH), part of the Laboratory Network of the Nigeria Centre for Disease Control (NCDC)
* Centre for Infectious Diseases and Microbiology - Public Health
* Centre for Infectious Diseases and Microbiology Laboratory Services
* Centre for Infectious Diseases and Microbiology- Public Health
* Centro Hospital do Porto, E.P.E. - H. Geral de Santo Antonio
* Centro Hospitalar e Universitario de Sao Joao, Porto
* Charite Universitatsmedizin Berlin, Institute of Virology; Institut fur Mikrobiologie der Bundeswehr, Munich
* Department of Infectious Diseases, Istituto Superiore di Sanita, Roma , Italy
* Department of Infectious Diseases, Istituto Superiore di Sanita, Rome, Italy
* Department of Infectious and Tropical Diseases, Bichat Claude Bernard Hospital, Paris
* Department of Internal Medicine, Triemli Hospital
* Department of Laboratory Medicine, National Taiwan University Hospital
* Department of Microbiology, Institute for Viral Diseases, College of Medicine, Korea University
* Department of Pathology, Toshima Hospital
* Department of Virology III, National Institute of Infectious Diseases
* Department of Virology and Immunology, University of Helsinki and Helsinki University Hospital, Huslab Finland
* Department of microbiology laboratory,Anhui Provincial Center for Disease Control and Prevention
* Dept. of Pathology, National Institute of Infectious Diseases
* Dept. of Virology III, National Institute of Infectious Diseases
* Dienst Gezondheid & Jeugd Zuid-Holland Zuid
* Division of Infectious Diseases, Department of Internal Medicine, Korea University College of Medicine
* Division of Infectious Diseases, University Hospital Zurich
* Division of Viral Diseases, Center for Laboratory Control of Infectious Diseases, Korea Centers for Diseases Control and Prevention
* Dutch COVID-19 response team
* ErasmusMC
* Foundation Elisabeth-Tweesteden Ziekenhuis
* Foundation Pamm
* Fujian Center for Disease Control and Prevention
* General Hospital of Central Theater Command of People's Liberation Army of China
* Guangdong Provincial Center for Diseases Control and Prevention; Guangdong Provincial Public Health
* Guangdong Provincial Center for Diseases Control and Prevention; Guangdong Provinical Public Health
* Guangdong Provincial Center for Diseases Control and Prevention;Guangdong Provincial Institute of Public Health
* Guangdong Provincial Institution of Public Health, Guangdong Provinical Center for Disease Control and Prevention
* HUS Diagnostiikkakeskus, Hallinto
* Hangzhou Center for Disease Control and Prevention
* Hangzhou Center for Disease and Control Microbiology Lab
* Harborview Medical Center
* Hong Kong Department of Health
* Hospital Israelita Albert Einstein
* Hospital Sao Joaquim Beneficencia Portuguesa
* IL Department of Public Health Chicago Laboratory
* INMI Lazzaro Spallanzani IRCCS
* Indian Council of Medical Research - National Institute of Virology
* Indian Council of Medical Research-National Institute of Virology
* Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College
* Institute of Viral Disease Control and Prevention, China CDC
* Instituto Nacional de Enfermedades Respiratorias
* Jingzhou Center for Disease Control and Prevention
* KU Leuven, Clinical and Epidemiological Virology
* Klinik Hirslanden Zurich
* Korea Centers for Disease Control & Prevention (KCDC) Center for Laboratory Control of Infectious Diseases Division of Viral Diseases
* Laboratoire National de Sante
* Laboratoire de Virologie, HUG
* Laboratorio di Microbiologia e Virologia, Universita Vita-Salute San Raffaele, Milano
* Laboratory Medicine
* Lapland Central Hospital
* MHC Brabant Zuidoost
* MHC Drente
* MHC Flevoland
* MHC Gooi & Vechtstreek
* MHC Haaglanden
* MHC Hart voor Brabant
* MHC Kennemerland
* MHC Rotterdam-Rijnmond
* MHC Utrecht
* MHC West-Brabant
* MSHS Clinical Microbiology Laboratories
* Massachusetts Department of Public Health
* Monash Medical Centre
* NHC Key laboratory of Enteric Pathogenic Microbiology, Institute of Pathogenic Microbiology
* National Centre for Infectious Diseases
* National Influenza Center - National Institute of Hygiene and Epidemiology (NIHE)
* National Influenza Centre, National Public Health Laboratory, Kathmandu, Nepal
* National Institute for Viral Disease Control and Prevention, China CDC
* National Public Health Laboratory
* National Public Health Laboratory, National Centre for Infectious Diseases
* Pathology Queensland
* Providence Regional Medical Center
* Public Health Ontario Laboratory
* RIVM
* Respiratory Virus Unit, Microbiology Services Colindale, Public Health England
* Seattle Flu Study
* Second Hospital of Anhui Medical University
* Serology, Virology and OTDS Laboratories (SAViD), NSW Health Pathology Randwick
* Servicio Microbiologia. Hospital Clinico Universitario. Valencia.
* Shenzhen Key Laboratory of Pathogen and Immunity, National Clinical Research Center for Infectious Disease, Shenzhen Third People's Hospital
* Shenzhen Third People's Hospital
* Singapore General Hospital
* Singapore General Hospital, Molecular Laboratory, Division of Pathology
* Sorbonne Universite, Inserm et Assistance Publique-Hopitaux de Paris (Pitie Salpetriere)
* South China Agricultural University
* State Health Office Baden-Wuerttemberg
* Taiwan Centers for Disease Control
* Texas Department of State Health Services
* The Central Hospital Of Wuhan
* The National Institute of Public Health Center for Epidemiology and Microbiology
* The University of Hong Kong - Shenzhen Hospital
* Tianmen Center for Disease Control and Prevention
* UCD National Virus Reference Laboratory
* UW Virology Lab
* Union Hospital of Tongji Medical College, Huazhong University of Science and Technology
* Unknown
* Valley Medical Center
* Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust
* Virology Unit, Institut Pasteur du Cambodge.
* WA State Department of Health
* Wales Specialist Virology Centre
* Washington State Department of Health
* Washington State Public Health Lab
* Weifang Center for Disease Control and Prevention
* West of Scotland Specialist Virology Centre, NHSGGC
* Wisconsin Department of Health Services
* Wuhan Fourth Hospital
* Wuhan Institute of Virology, Chinese Academy of Sciences
* Wuhan Jinyintan Hospital
* Wuhan Lung Hospital
* Yongchuan District Center for Disease Control and Prevention
* Zhejiang Provincial Center for Disease Control and Prevention
* Zhongxian Center for Disease Control and Prevention
* Andersen Lab, The Scripps Research Institute
* Arizona Department of Health Services
* Auckland Hospital
* BCCDC Public Health Laboratory
* Bamrasnaradura Hospital
* Beijing Institute of Microbiology and Epidemiology
* Bundeswehr Institute of Microbiology
* CNR Virus des Infections Respiratoires - France SUD
* CR&WISCO GENERAL HOSPITAL
* California Department of Health
* California Department of Public Health
* Center of Medical Microbiology, Virology, and Hospital Hygiene, University of Duesseldorf
* Centers for Disease Control, R.O.C. (Taiwan)
* Centre Hositalier Universitaire de Rouen Laboratoire de Virologie
* Centre Hospitalier Compiegne Laboratoire de Biologie
* Centre Hospitalier Regional Universitaire de Nantes Laboratoire de Virologie
* Centre Hospitalier Rene Dubois Laboratoire de Microbiologie - Bat A
* Centre for Human and Zoonotic Virology (CHAZVY), College of Medicine University of Lagos/Lagos University Teaching Hospital (LUTH), part of the Laboratory Network of the Nigeria Centre for Disease Control (NCDC)
* Centre for Infectious Diseases and Microbiology - Public Health
* Centre for Infectious Diseases and Microbiology Laboratory Services
* Centre for Infectious Diseases and Microbiology- Public Health
* Centro Hospital do Porto, E.P.E. - H. Geral de Santo Antonio
* Centro Hospitalar e Universitario de Sao Joao, Porto
* Charite Universitatsmedizin Berlin, Institute of Virology; Institut fur Mikrobiologie der Bundeswehr, Munich
* Clinica Alemana de Santiago, Chile
* Clinica Santa Maria, Santiago, Chile
* Department of Infectious Diseases, Istituto Superiore di Sanita, Roma , Italy
* Department of Infectious Diseases, Istituto Superiore di Sanita, Rome, Italy
* Department of Infectious and Tropical Diseases, Bichat Claude Bernard Hospital, Paris
* Department of Internal Medicine, Triemli Hospital
* Department of Laboratory Medicine, National Taiwan University Hospital
* Department of Microbiology, Institute for Viral Diseases, College of Medicine, Korea University
* Department of Pathology, Toshima Hospital
* Department of Virology III, National Institute of Infectious Diseases
* Department of Virology and Immunology, University of Helsinki and Helsinki University Hospital, Huslab Finland
* Department of Virus and Microbiological Special diagnostics, Statens Serum Institut, Copenhagen, Denmark.
* Department of microbiology laboratory,Anhui Provincial Center for Disease Control and Prevention
* Dept. of Pathology, National Institute of Infectious Diseases
* Dept. of Virology III, National Institute of Infectious Diseases
* Dienst Gezondheid & Jeugd Zuid-Holland Zuid
* Division of Infectious Diseases, Department of Internal Medicine, Korea University College of Medicine
* Division of Infectious Diseases, University Hospital Zurich
* Division of Viral Diseases, Center for Laboratory Control of Infectious Diseases, Korea Centers for Diseases Control and Prevention
* Dutch COVID-19 response team
* ErasmusMC
* Foundation Elisabeth-Tweesteden Ziekenhuis
* Foundation Pamm
* Fujian Center for Disease Control and Prevention
* General Hospital of Central Theater Command of People's Liberation Army of China
* Gorgas Memorial Institute for Health Studies
* Guangdong Provincial Center for Diseases Control and Prevention; Guangdong Provincial Public Health
* Guangdong Provincial Center for Diseases Control and Prevention; Guangdong Provinical Public Health
* Guangdong Provincial Center for Diseases Control and Prevention;Guangdong Provincial Institute of Public Health
* Guangdong Provincial Institution of Public Health, Guangdong Provinical Center for Disease Control and Prevention
* HUS Diagnostiikkakeskus, Hallinto
* Hangzhou Center for Disease Control and Prevention
* Hangzhou Center for Disease and Control Microbiology Lab
* Harborview Medical Center
* Hong Kong Department of Health
* Hopital Instruction des Armees - BEGIN
* Hopital Robert Debre Laboratoire de Virologie
* Hopitaux universitaires de Geneve Laboratoire de Virologie
* Hospital Israelita Albert Einstein
* Hospital Sao Joaquim Beneficencia Portuguesa
* Hospital de Talca, Chile
* IL Department of Public Health Chicago Laboratory
* INMI Lazzaro Spallanzani IRCCS
* Indian Council of Medical Research - National Institute of Virology
* Indian Council of Medical Research-National Institute of Virology
* Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College
* Institute of Viral Disease Control and Prevention, China CDC
* Instituto Nacional de Enfermedades Respiratorias
* Jingzhou Center for Disease Control and Prevention
* KU Leuven, Clincal and Epidemiological Virology
* KU Leuven, Clinical and Epidemiological Virology
* Klinik Hirslanden Zurich
* Korea Centers for Disease Control & Prevention (KCDC) Center for Laboratory Control of Infectious Diseases Division of Viral Diseases
* LACEN RJ - Laboratorio Central de Saude Publica Noel Nutels
* LACEN/ES - Laboratorio Central de Saude Publica do Espirito Santo
* Laboratoire National de Sante
* Laboratoire de Virologie Institut de Virologie - INSERM U 1109 Hopitaux Universitaires de Strasbourg
* Laboratoire de Virologie, HUG
* Laboratorio Central de Saude Publica Professor Goncalo Moniz  LACEN/BA
* Laboratorio di Microbiologia e Virologia, Universita Vita-Salute San Raffaele, Milano
* Laboratory Medicine
* Laboratory of Molecular Virology, Pontificia Universidad Catolica de Chile
* Lapland Central Hospital
* MHC Brabant Zuidoost
* MHC Drente
* MHC Flevoland
* MHC Gooi & Vechtstreek
* MHC Haaglanden
* MHC Hart voor Brabant
* MHC Kennemerland
* MHC Rotterdam-Rijnmond
* MHC Utrecht
* MHC West-Brabant
* MSHS Clinical Microbiology Laboratories
* Massachusetts Department of Public Health
* Minnesota Department of Health, Public Health Laboratory
* Monash Medical Centre
* NHC Key laboratory of Enteric Pathogenic Microbiology, Institute of Pathogenic Microbiology
* NYU Langone Health
* National Centre for Infectious Diseases
* National Influenza Center - National Institute of Hygiene and Epidemiology (NIHE)
* National Influenza Centre, National Public Health Laboratory, Kathmandu, Nepal
* National Institute for Viral Disease Control and Prevention, China CDC
* National Public Health Laboratory
* National Public Health Laboratory, National Centre for Infectious Diseases
* Pathology Queensland
* Providence Regional Medical Center
* Public Health Ontario Laboratory
* R. G. Lugar Center for Public Health Research,  National Center for Disease Control and Public Health (NCDC) of Georgia.
* RIVM
* Regional Virus Laboratory, Belfast
* Respiratory Virus Unit, Microbiology Services Colindale, Public Health England
* Seattle Flu Study
* Second Hospital of Anhui Medical University
* Serology, Virology and OTDS Laboratories (SAViD), NSW Health Pathology Randwick
* Servicio Microbiologia, Hospital Clinico Universitario, Valencia
* Servicio Microbiologia. Hospital Clinico Universitario. Valencia.
* Shandong Provincial Center for Disease Control and Prevention
* Shenzhen Key Laboratory of Pathogen and Immunity, National Clinical Research Center for Infectious Disease, Shenzhen Third People's Hospital
* Shenzhen Third People's Hospital
* Singapore General Hospital
* Singapore General Hospital, Molecular Laboratory, Division of Pathology
* Sorbonne Universite, Inserm et Assistance Publique-Hopitaux de Paris (Pitie Salpetriere)
* South China Agricultural University
* State Health Office Baden-Wuerttemberg
* State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, National Clinical Research Center for Infectious Diseases, First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China. 310003
* State Key Laboratory of Respiratory Disease, National Clinical Research Center for Respiratory Disease, Guangzhou Institute of Respiratory Health, the First Affiliated Hospital of Guangzhou Medical University
* Tai Lung Veterinary Laboratory, Agriculture, Fisheries and Conservation Department
* Taiwan Centers for Disease Control
* Texas Department of State Health Services
* The Central Hospital Of Wuhan
* The National Institute of Public Health Center for Epidemiology and Microbiology
* The University of Hong Kong - Shenzhen Hospital
* Tianmen Center for Disease Control and Prevention
* UCD National Virus Reference Laboratory
* UW Virology Lab
* Union Hospital of Tongji Medical College, Huazhong University of Science and Technology
* Unknown
* Utah Public Health Laboratory
* Valley Medical Center
* Viral Respiratory Lab, National Institute for Biomedical Research (INRB)
* Virology Department, Royal Infirmary of Edinburgh, NHS Lothian
* Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust
* Virology Unit, Institut Pasteur du Cambodge.
* WA State Department of Health
* WHO National Influenza Centre Russian Federation
* Wales Specialist Virology Centre
* Washington State Department of Health
* Washington State Public Health Lab
* Weifang Center for Disease Control and Prevention
* West of Scotland Specialist Virology Centre, NHSGGC
* Wisconsin Department of Health Services
* Wuhan Fourth Hospital
* Wuhan Institute of Virology, Chinese Academy of Sciences
* Wuhan Jinyintan Hospital
* Wuhan Lung Hospital
* Yongchuan District Center for Disease Control and Prevention
* Zhejiang Provincial Center for Disease Control and Prevention
* Zhongxian Center for Disease Control and Prevention

所有数据已被共享至GISAID数据库。 我们感谢各位科学家的慷慨分享。


在右边,我们列出了每个实验室共享的序列。


感谢下列实验室里科学家们慷慨分享SARS-CoV-2的基因组:

* Arizona Department of Health Services
	* USA/AZ1/2020

* Auckland Hospital
	* NewZealand/01/2020

* BCCDC Public Health Laboratory
	* Canada/BC_37_0-2/2020

* Bamrasnaradura Hospital
	* Nonthaburi/61/2020
	* Nonthaburi/74/2020

* Beijing Institute of Microbiology and Epidemiology
	* pangolin/Guangdong/P2S/2019
	* pangolin/Guangxi/P1E/2017
	* pangolin/Guangxi/P2V/2017
	* pangolin/Guangxi/P3B/2017
	* pangolin/Guangxi/P4L/2017
	* pangolin/Guangxi/P5E/2017
	* pangolin/Guangxi/P5L/2017

* Bundeswehr Institute of Microbiology
	* Germany/BavPat2/2020
	* Germany/BavPat3/2020

* CNR Virus des Infections Respiratoires - France SUD
	* France/RA739/2020

* CR&WISCO GENERAL HOSPITAL
	* Wuhan/HBCDC-HB-05/2020

* California Department of Health
	* USA/CA3/2020
	* USA/CA4/2020
	* USA/CA5/2020

* California Department of Public Health
	* USA/CA-CDPH-UC1/2020
	* USA/CA-CDPH-UC2/2020
	* USA/CA-CDPH-UC3/2020
	* USA/CA-CDPH-UC4/2020
	* USA/CA-CDPH-UC5/2020
	* USA/CA-CDPH-UC6/2020
	* USA/CA-CDPH-UC7/2020
	* USA/CA-CDPH-UC8/2020
	* USA/CA-CDPH-UC9/2020
	* USA/CA1/2020
	* USA/CA2/2020
	* USA/CA6/2020
	* USA/CA7/2020
	* USA/CA8/2020
	* USA/CA9/2020
	* USA/UC-CDPH-UC11/2020

* Center of Medical Microbiology, Virology, and Hospital Hygiene
	* Germany/NRW-01/2020
	* Germany/NRW-02-1/2020
	* Germany/NRW-03/2020
	* Germany/NRW-04/2020

* Center of Medical Microbiology, Virology, and Hospital Hygiene, University of Duesseldorf
	* Germany/NRW-011/2020
	* Germany/NRW-05/2020
	* Germany/NRW-06/2020
	* Germany/NRW-07/2020
	* Germany/NRW-08/2020
	* Germany/NRW-09/2020
	* Germany/NRW-10/2020

* Centers for Disease Control, R.O.C. (Taiwan)
	* Taiwan/2/2020

* Centre for Human and Zoonotic Virology (CHAZVY), College of Medicine University of Lagos/Lagos University Teaching Hospital (LUTH), part of the Laboratory Network of the Nigeria Centre for Disease Control (NCDC)
	* Nigeria/Lagos01/2020

* Centre for Infectious Diseases and Microbiology - Public Health
	* Australia/NSW10/2020
	* Australia/NSW12/2020
	* Australia/NSW13/2020
	* Australia/NSW14/2020

* Centre for Infectious Diseases and Microbiology Laboratory Services
	* Australia/NSW01/2020
	* Australia/NSW05/2020
	* Australia/NSW06/2020
	* Australia/NSW07/2020
	* Australia/NSW08/2020
	* Australia/NSW09/2020
	* Sydney/2/2020

* Centre for Infectious Diseases and Microbiology- Public Health
	* Australia/NSW11/2020

* Centro Hospital do Porto, E.P.E. - H. Geral de Santo Antonio
	* Portugal/CV62/2020

* Centro Hospitalar e Universitario de Sao Joao, Porto
	* Portugal/CV63/2020

* Charite Universitatsmedizin Berlin, Institute of Virology; Institut fur Mikrobiologie der Bundeswehr, Munich
	* Germany/BavPat1/2020

* Department of Infectious Diseases, Istituto Superiore di Sanita, Roma , Italy
	* Italy/CDG1/2020

* Department of Infectious Diseases, Istituto Superiore di Sanita, Rome, Italy
	* Italy/SPL1/2020

* Department of Infectious and Tropical Diseases, Bichat Claude Bernard Hospital, Paris
	* France/IDF0372-isl/2020
	* France/IDF0372/2020
	* France/IDF0373/2020
	* France/IDF0386-islP1/2020
	* France/IDF0386-islP3/2020
	* France/IDF0515-isl/2020
	* France/IDF0515/2020
	* France/IDF0571/2020

* Department of Internal Medicine, Triemli Hospital
	* Switzerland/1000477102/2020
	* Switzerland/1000477377/2020

* Department of Laboratory Medicine, National Taiwan University Hospital
	* Taiwan/NTU01/2020
	* Taiwan/NTU02/2020
	* Taiwan/NTU03/2020

* Department of Microbiology, Institute for Viral Diseases, College of Medicine, Korea University
	* SouthKorea/KUMC01/2020
	* SouthKorea/KUMC02/2020
	* SouthKorea/KUMC04/2020
	* SouthKorea/KUMC06/2020

* Department of Pathology, Toshima Hospital
	* Japan/TK/20-31-3/2020

* Department of Virology III, National Institute of Infectious Diseases
	* Japan/AI/I-004/2020

* Department of Virology and Immunology, University of Helsinki and Helsinki University Hospital, Huslab Finland
	* Finland/FIN01032020/2020
	* Finland/FIN03032020A/2020
	* Finland/FIN03032020B/2020
	* Finland/FIN03032020C/2020

* Department of microbiology laboratory,Anhui Provincial Center for Disease Control and Prevention
	* Anhui/SZ005/2020

* Dept. of Pathology, National Institute of Infectious Diseases
	* Japan/NA-20-05-1/2020
	* Japan/OS-20-07-1/2020

* Dept. of Virology III, National Institute of Infectious Diseases
	* Japan/KY-V-029/2020
	* Japan/TY-WK-012/2020
	* Japan/TY-WK-501/2020
	* Japan/TY-WK-521/2020

* Dienst Gezondheid & Jeugd Zuid-Holland Zuid
	* Netherlands/Hardinxveld_Giessendam_1364806/2020

* Division of Infectious Diseases, Department of Internal Medicine, Korea University College of Medicine
	* SouthKorea/KUMC03/2020
	* SouthKorea/KUMC05/2020

* Division of Infectious Diseases, University Hospital Zurich
	* Switzerland/1000477796/2020
	* Switzerland/1000477797/2020
	* Switzerland/1000477806/2020

* Division of Viral Diseases, Center for Laboratory Control of Infectious Diseases, Korea Centers for Diseases Control and Prevention
	* SouthKorea/KCDC05/2020
	* SouthKorea/KCDC06/2020
	* SouthKorea/KCDC07/2020
	* SouthKorea/KCDC12/2020
	* SouthKorea/KCDC24/2020

* Dutch COVID-19 response team
	* Netherlands/Gelderland_1/2020
	* Netherlands/Limburg_2/2020
	* Netherlands/Limburg_3/2020
	* Netherlands/Limburg_4/2020
	* Netherlands/Limburg_5/2020
	* Netherlands/Limburg_6/2020
	* Netherlands/NoordBrabant_1/2020
	* Netherlands/NoordBrabant_10/2020
	* Netherlands/NoordBrabant_11/2020
	* Netherlands/NoordBrabant_12/2020
	* Netherlands/NoordBrabant_13/2020
	* Netherlands/NoordBrabant_14/2020
	* Netherlands/NoordBrabant_15/2020
	* Netherlands/NoordBrabant_16/2020
	* Netherlands/NoordBrabant_17/2020
	* Netherlands/NoordBrabant_18/2020
	* Netherlands/NoordBrabant_19/2020
	* Netherlands/NoordBrabant_2/2020
	* Netherlands/NoordBrabant_20/2020
	* Netherlands/NoordBrabant_21/2020
	* Netherlands/NoordBrabant_22/2020
	* Netherlands/NoordBrabant_23/2020
	* Netherlands/NoordBrabant_24/2020
	* Netherlands/NoordBrabant_25/2020
	* Netherlands/NoordBrabant_26/2020
	* Netherlands/NoordBrabant_27/2020
	* Netherlands/NoordBrabant_28/2020
	* Netherlands/NoordBrabant_29/2020
	* Netherlands/NoordBrabant_3/2020
	* Netherlands/NoordBrabant_30/2020
	* Netherlands/NoordBrabant_31/2020
	* Netherlands/NoordBrabant_32/2020
	* Netherlands/NoordBrabant_33/2020
	* Netherlands/NoordBrabant_34/2020
	* Netherlands/NoordBrabant_35/2020
	* Netherlands/NoordBrabant_36/2020
	* Netherlands/NoordBrabant_37/2020
	* Netherlands/NoordBrabant_38/2020
	* Netherlands/NoordBrabant_39/2020
	* Netherlands/NoordBrabant_4/2020
	* Netherlands/NoordBrabant_5/2020
	* Netherlands/NoordBrabant_6/2020
	* Netherlands/NoordHolland_1/2020
	* Netherlands/NoordHolland_2/2020
	* Netherlands/Overijssel_1/2020
	* Netherlands/Overijssel_2/2020
	* Netherlands/Utrecht_1/2020
	* Netherlands/Utrecht_10/2020
	* Netherlands/Utrecht_11/2020
	* Netherlands/Utrecht_12/2020
	* Netherlands/Utrecht_13/2020
	* Netherlands/Utrecht_14/2020
	* Netherlands/Utrecht_15/2020
	* Netherlands/Utrecht_16/2020
	* Netherlands/Utrecht_2/2020
	* Netherlands/Utrecht_3/2020
	* Netherlands/Utrecht_4/2020
	* Netherlands/Utrecht_5/2020
	* Netherlands/Utrecht_6/2020
	* Netherlands/Utrecht_7/2020
	* Netherlands/Utrecht_8/2020
	* Netherlands/ZuidHolland_1/2020
	* Netherlands/ZuidHolland_10/2020
	* Netherlands/ZuidHolland_11/2020
	* Netherlands/ZuidHolland_13/2020
	* Netherlands/ZuidHolland_14/2020
	* Netherlands/ZuidHolland_15/2020
	* Netherlands/ZuidHolland_16/2020
	* Netherlands/ZuidHolland_17/2020
	* Netherlands/ZuidHolland_18/2020
	* Netherlands/ZuidHolland_19/2020
	* Netherlands/ZuidHolland_2/2020
	* Netherlands/ZuidHolland_20/2020
	* Netherlands/ZuidHolland_21/2020
	* Netherlands/ZuidHolland_22/2020
	* Netherlands/ZuidHolland_23/2020
	* Netherlands/ZuidHolland_24/2020
	* Netherlands/ZuidHolland_5/2020
	* Netherlands/ZuidHolland_6/2020
	* Netherlands/ZuidHolland_7/2020
	* Netherlands/ZuidHolland_8/2020
	* Netherlands/ZuidHolland_9/2020

* ErasmusMC
	* Netherlands/Nieuwendijk_1363582/2020
	* Netherlands/Rotterdam_1363790/2020

* Foundation Elisabeth-Tweesteden Ziekenhuis
	* Netherlands/Tilburg_1363354/2020
	* Netherlands/Tilburg_1364286/2020

* Foundation Pamm
	* Netherlands/Berlicum_1363564/2020

* Fujian Center for Disease Control and Prevention
	* Fujian/13/2020
	* Fujian/8/2020

* General Hospital of Central Theater Command of People's Liberation Army of China
	* Wuhan/WH01/2019
	* Wuhan/WH02/2019
	* Wuhan/WH03/2020
	* Wuhan/WH04/2020

* Guangdong Provincial Center for Diseases Control and Prevention; Guangdong Provincial Public Health
	* Foshan/20SF207/2020
	* Foshan/20SF210/2020
	* Foshan/20SF211/2020
	* Guangdong/20SF012/2020
	* Guangdong/20SF013/2020
	* Guangdong/20SF014/2020
	* Guangdong/20SF025/2020
	* Guangdong/20SF028/2020
	* Guangdong/20SF040/2020

* Guangdong Provincial Center for Diseases Control and Prevention; Guangdong Provinical Public Health
	* Guangdong/20SF174/2020
	* Guangzhou/20SF206/2020

* Guangdong Provincial Center for Diseases Control and Prevention;Guangdong Provincial Institute of Public Health
	* Guangdong/20SF201/2020

* Guangdong Provincial Institution of Public Health, Guangdong Provinical Center for Disease Control and Prevention
	* Guangdong/2020XN4239-P0034/2020
	* Guangdong/2020XN4243-P0035/2020
	* Guangdong/2020XN4273-P0036/2020
	* Guangdong/2020XN4276-P0037/2020
	* Guangdong/2020XN4291-P0038/2020
	* Guangdong/2020XN4373-P0039/2020
	* Guangdong/2020XN4433-P0040/2020
	* Guangdong/2020XN4448-P0002/2020
	* Guangdong/2020XN4459-P0041/2020
	* Guangdong/2020XN4475-P0042/2020
	* Guangdong/DG-S2-P0054/2020
	* Guangdong/DG-S41-P0056/2020
	* Guangdong/DG-S6-P0055/2020
	* Guangdong/DG-S9-P0045/2020
	* Guangdong/FS-S29-P0051/2020
	* Guangdong/FS-S30-P0052/2020
	* Guangdong/FS-S34-P0015/2020
	* Guangdong/FS-S42-P0046/2020
	* Guangdong/FS-S48-P0047/2020
	* Guangdong/FS-S50-P0053/2020
	* Guangdong/GD2020012-P0022/2020
	* Guangdong/GD2020016-P0011/2020
	* Guangdong/GD2020080-P0010/2020
	* Guangdong/GD2020085-P0043/2020
	* Guangdong/GD2020086-P0021/2020
	* Guangdong/GD2020087-P0008/2020
	* Guangdong/GD2020115-P0009/2020
	* Guangdong/GD2020134-P0031/2020
	* Guangdong/GD2020139-P0007/2020
	* Guangdong/GD2020227-P0029/2020
	* Guangdong/GD2020233-P0027/2020
	* Guangdong/GD2020234-P0023/2020
	* Guangdong/GD2020241-P0013/2020
	* Guangdong/GD2020246-P0028/2020
	* Guangdong/GD2020258-P0018/2020
	* Guangdong/GDFS2020052-P0025/2020
	* Guangdong/GDFS2020054-P0005/2020
	* Guangdong/GDFS2020056-P0044/2020
	* Guangdong/GDFS2020127-P0026/2020
	* Guangdong/GDSZ202004-P0004/2020
	* Guangdong/GDSZ202008-P0020/2020
	* Guangdong/GDSZ202009-P0032/2020
	* Guangdong/GDSZ202013-P0014/2020
	* Guangdong/GDSZ202015-P0019/2020
	* Guangdong/GZ-S6-P0050/2020
	* Guangdong/JM-S1-P0062/2020
	* Guangdong/MM-S1-P0048/2020
	* Guangdong/SZ-N128-P0057/2020
	* Guangdong/SZ-N59-P0049/2020
	* Guangdong/ZH-N22-P0059/2020
	* Guangdong/ZH-S33-P0058/2020
	* Guangdong/ZQ-S2-P0061/2020
	* Guangdong/ZS-S6-P0060/2020

* HUS Diagnostiikkakeskus, Hallinto
	* Finland/FIN-25/2020

* Hangzhou Center for Disease Control and Prevention
	* Hangzhou/HZCDC0001/2020

* Hangzhou Center for Disease and Control Microbiology Lab
	* Hangzhou/HZ-1/2020

* Harborview Medical Center
	* USA/WA3-UW1/2020
	* USA/WA9-UW6/2020

* Hong Kong Department of Health
	* HongKong/VB20024950/2020
	* HongKong/VB20026565/2020
	* HongKong/VM20001061/2020
	* HongKong/case42_VM20002493/2020
	* HongKong/case48_VM20002507/2020
	* HongKong/case52_VM20002582/2020
	* HongKong/case78_VM20002849/2020
	* HongKong/case85_VM20002868/2020
	* HongKong/case90_VM20002907/2020
	* canine/HongKong/20-02756/2020

* Hospital Israelita Albert Einstein
	* Brazil/SPBR-01/2020
	* Brazil/SPBR-02/2020
	* Brazil/SPBR-03/2020

* Hospital Sao Joaquim Beneficencia Portuguesa
	* Brazil/SPBR-04/2020
	* Brazil/SPBR-05/2020
	* Brazil/SPBR-06/2020

* IL Department of Public Health Chicago Laboratory
	* USA/IL1/2020
	* USA/IL2/2020

* INMI Lazzaro Spallanzani IRCCS
	* Italy/INMI1-cs/2020
	* Italy/INMI1-isl/2020

* Indian Council of Medical Research - National Institute of Virology
	* India/1-27/2020

* Indian Council of Medical Research-National Institute of Virology
	* India/1-31/2020

* Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College
	* Wuhan/IPBCAMS-WH-01/2019
	* Wuhan/IPBCAMS-WH-02/2019
	* Wuhan/IPBCAMS-WH-03/2019
	* Wuhan/IPBCAMS-WH-04/2019
	* Wuhan/IPBCAMS-WH-05/2020

* Institute of Viral Disease Control and Prevention, China CDC
	* Wuhan/IVDC-HB-envF13-20/2020
	* Wuhan/IVDC-HB-envF13-21/2020
	* Wuhan/IVDC-HB-envF13/2020
	* Wuhan/IVDC-HB-envF54/2020

* Instituto Nacional de Enfermedades Respiratorias
	* Mexico/CDMX/InDRE_01/2020

* Jingzhou Center for Disease Control and Prevention
	* Jingzhou/HBCDC-HB-01/2020

* KU Leuven, Clinical and Epidemiological Virology
	* Belgium/GHB-03021/2020

* Klinik Hirslanden Zurich
	* Switzerland/1000477757/2020

* Korea Centers for Disease Control & Prevention (KCDC) Center for Laboratory Control of Infectious Diseases Division of Viral Diseases
	* SouthKorea/KCDC03/2020

* Laboratoire National de Sante
	* Luxembourg/Lux1/2020

* Laboratoire de Virologie, HUG
	* Switzerland/AG0361/2020
	* Switzerland/BL0902/2020
	* Switzerland/GE3121/2020
	* Switzerland/GE3895/2020
	* Switzerland/GE5373/2020
	* Switzerland/GE9586/2020
	* Switzerland/TI9486/2020
	* Switzerland/VD5615/2020

* Laboratorio di Microbiologia e Virologia, Universita Vita-Salute San Raffaele, Milano
	* Italy/UniSR1/2020

* Laboratory Medicine
	* Taiwan/CGMH-CGU-01/2020

* Lapland Central Hospital
	* Finland/1/2020

* MHC Brabant Zuidoost
	* Netherlands/Eindhoven_1363782/2020

* MHC Drente
	* Netherlands/Dalen_1363624/2020

* MHC Flevoland
	* Netherlands/Zeewolde_1365080/2020

* MHC Gooi & Vechtstreek
	* Netherlands/Blaricum_1364780/2020
	* Netherlands/Naarden_1364774/2020

* MHC Haaglanden
	* Netherlands/Nootdorp_1364222/2020

* MHC Hart voor Brabant
	* Netherlands/Oisterwijk_1364072/2020

* MHC Kennemerland
	* Netherlands/Haarlem_1363688/2020

* MHC Rotterdam-Rijnmond
	* Netherlands/Rotterdam_1364040/2020

* MHC Utrecht
	* Netherlands/Utrecht_1363564/2020
	* Netherlands/Utrecht_1363628/2020
	* Netherlands/Utrecht_1364066/2020

* MHC West-Brabant
	* Netherlands/Andel_1365066/2020
	* Netherlands/Helmond_1363548/2020

* MSHS Clinical Microbiology Laboratories
	* USA/NY1-PV08001/2020

* Massachusetts Department of Public Health
	* USA/MA1/2020

* Monash Medical Centre
	* Australia/VIC01/2020

* NHC Key laboratory of Enteric Pathogenic Microbiology, Institute of Pathogenic Microbiology
	* Jiangsu/JS01/2020
	* Jiangsu/JS02/2020
	* Jiangsu/JS03/2020

* National Centre for Infectious Diseases
	* Singapore/12/2020
	* Singapore/13/2020
	* Singapore/14/2020
	* Singapore/3/2020
	* Singapore/4/2020

* National Influenza Center - National Institute of Hygiene and Epidemiology (NIHE)
	* Vietnam/VR03-38142/2020

* National Influenza Centre, National Public Health Laboratory, Kathmandu, Nepal
	* Nepal/61/2020

* National Institute for Viral Disease Control and Prevention, China CDC
	* Beijing/IVDC-BJ-005/2020
	* Chongqing/IVDC-CQ-001/2020
	* Henan/IVDC-HeN-002/2020
	* Jiangsu/IVDC-JS-001/2020
	* Jiangxi/IVDC-JX-002/2020
	* Shandong/IVDC-SD-001/2020
	* Shanghai/IVDC-SH-001/2020
	* Sichuan/IVDC-SC-001/2020
	* Wuhan/IVDC-HB-01/2019
	* Wuhan/IVDC-HB-04/2020
	* Wuhan/IVDC-HB-05/2019
	* Yunnan/IVDC-YN-003/2020

* National Public Health Laboratory
	* Singapore/11/2020

* National Public Health Laboratory, National Centre for Infectious Diseases
	* Singapore/10/2020
	* Singapore/7/2020
	* Singapore/8/2020
	* Singapore/9/2020

* Pathology Queensland
	* Australia/QLD01/2020
	* Australia/QLD02/2020
	* Australia/QLD03/2020
	* Australia/QLD04/2020
	* Australia/QLD09/2020

* Providence Regional Medical Center
	* USA/WA1/2020

* Public Health Ontario Laboratory
	* Canada/ON-PHL2445/2020
	* Canada/ON-VIDO-01/2020

* RIVM
	* Netherlands/Delft_1363424/2020
	* Netherlands/Diemen_1363454/2020
	* Netherlands/Loon_op_zand_1363512/2020
	* Netherlands/Oss_1363500/2020
	* NetherlandsL/Houten_1363498/2020

* Respiratory Virus Unit, Microbiology Services Colindale, Public Health England
	* England/01/2020
	* England/02/2020
	* England/09c/2020
	* England/200641094/2020
	* England/200690245/2020
	* England/200690300/2020
	* England/200690306/2020
	* England/200690756/2020
	* England/200940527/2020
	* England/200960041/2020
	* England/200960515/2020
	* England/200981386/2020
	* England/200990002/2020
	* England/200990006/2020
	* England/200990660/2020
	* England/200990723/2020
	* England/200990724/2020
	* England/200990725/2020
	* England/200991076/2020
	* England/201000003/2020
	* England/201040081/2020
	* England/201040141/2020

* Seattle Flu Study
	* USA/WA-S2/2020
	* USA/WA-S3/2020

* Second Hospital of Anhui Medical University
	* Hefei/2/2020

* Serology, Virology and OTDS Laboratories (SAViD), NSW Health Pathology Randwick
	* Sydney/3/2020

* Servicio Microbiologia. Hospital Clinico Universitario. Valencia.
	* Spain/Valencia1/2020
	* Spain/Valencia2/2020

* Shenzhen Key Laboratory of Pathogen and Immunity, National Clinical Research Center for Infectious Disease, Shenzhen Third People's Hospital
	* Shenzhen/SZTH-002/2020
	* Shenzhen/SZTH-003/2020
	* Shenzhen/SZTH-004/2020

* Shenzhen Third People's Hospital
	* Shenzhen/SZTH-001/2020

* Singapore General Hospital
	* Singapore/1/2020
	* Singapore/2/2020

* Singapore General Hospital, Molecular Laboratory, Division of Pathology
	* Singapore/5/2020
	* Singapore/6/2020

* Sorbonne Universite, Inserm et Assistance Publique-Hopitaux de Paris (Pitie Salpetriere)
	* France/IDF0626/2020

* South China Agricultural University
	* pangolin/Guandong/1/2019

* State Health Office Baden-Wuerttemberg
	* Germany/Baden-Wuerttemberg-1/2020

* Taiwan Centers for Disease Control
	* Taiwan/3/2020
	* Taiwan/4/2020

* Texas Department of State Health Services
	* USA/TX1/2020

* The Central Hospital Of Wuhan
	* Wuhan/HBCDC-HB-02/2020

* The National Institute of Public Health Center for Epidemiology and Microbiology
	* CzechRepublic/951/2020

* The University of Hong Kong - Shenzhen Hospital
	* Shenzhen/HKU-SZ-002/2020
	* Shenzhen/HKU-SZ-005/2020

* Tianmen Center for Disease Control and Prevention
	* Tianmen/HBCDC-HB-07/2020

* UCD National Virus Reference Laboratory
	* Ireland/COR-20134/2020

* UW Virology Lab
	* USA/WA-UW15/2020
	* USA/WA-UW16/2020
	* USA/WA-UW17/2020
	* USA/WA-UW18/2020
	* USA/WA-UW19/2020
	* USA/WA-UW20/2020
	* USA/WA-UW21/2020
	* USA/WA11-UW7/2020
	* USA/WA12-UW8/2020
	* USA/WA13-UW9/2020
	* USA/WA14-UW10/2020
	* USA/WA15-UW11/2020
	* USA/WA16-UW12/2020
	* USA/WA17-UW13/2020
	* USA/WA18-UW14/2020

* Union Hospital of Tongji Medical College, Huazhong University of Science and Technology
	* Wuhan/HBCDC-HB-03/2020
	* Wuhan/HBCDC-HB-04/2020

* Unknown
	* Netherlands/Coevorden_1363618/2020

* Valley Medical Center
	* USA/WA8-UW5/2020

* Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust
	* England/Sheff01/2020
	* England/Sheff02/2020

* Virology Unit, Institut Pasteur du Cambodge.
	* Cambodia/0012/2020

* WA State Department of Health
	* USA/WA1-A12/2020

* Wales Specialist Virology Centre
	* Wales/PHW03/2020
	* Wales/PHW05/2020
	* Wales/PHW1/2020
	* Wales/PHW2/2020

* Washington State Department of Health
	* USA/WA1-F6/2020
	* USA/WA2/2020

* Washington State Public Health Lab
	* USA/WA4-UW2/2020
	* USA/WA6-UW3/2020
	* USA/WA7-UW4/2020

* Weifang Center for Disease Control and Prevention
	* China/WF0001/2020
	* China/WF0002/2020
	* China/WF0003/2020
	* China/WF0004/2020
	* China/WF0006/2020
	* China/WF0009/2020
	* China/WF0012/2020
	* China/WF0014/2020
	* China/WF0015/2020
	* China/WF0016/2020
	* China/WF0017/2020
	* China/WF0018/2020
	* China/WF0019/2020
	* China/WF0020/2020
	* China/WF0021/2020
	* China/WF0023/2020
	* China/WF0024/2020
	* China/WF0026/2020
	* China/WF0028/2020
	* China/WF0029/2020

* West of Scotland Specialist Virology Centre, NHSGGC
	* Scotland/CVR01/2020
	* Scotland/CVR02/2020
	* Scotland/CVR03/2020
	* Scotland/CVR04/2020
	* Scotland/CVR05/2020

* Wisconsin Department of Health Services
	* USA/WI1/2020

* Wuhan Fourth Hospital
	* Wuhan/WH05/2020

* Wuhan Institute of Virology, Chinese Academy of Sciences
	* bat/Yunnan/RaTG13/2013

* Wuhan Jinyintan Hospital
	* Wuhan/HBCDC-HB-01/2019
	* Wuhan/HBCDC-HB-02/2019
	* Wuhan/HBCDC-HB-03/2019
	* Wuhan/HBCDC-HB-04/2019
	* Wuhan/WIV02/2019
	* Wuhan/WIV04/2019
	* Wuhan/WIV05/2019
	* Wuhan/WIV06/2019
	* Wuhan/WIV07/2019

* Wuhan Lung Hospital
	* Wuhan/HBCDC-HB-06/2020

* Yongchuan District Center for Disease Control and Prevention
	* Chongqing/YC01/2020

* Zhejiang Provincial Center for Disease Control and Prevention
	* Zhejiang/WZ-01/2020
	* Zhejiang/WZ-02/2020

* Zhongxian Center for Disease Control and Prevention
	* Chongqing/ZX01/2020

* Andersen Lab, The Scripps Research Institute
	* USA/CA-PC101P/2020

* Arizona Department of Health Services
	* USA/AZ1/2020

* Auckland Hospital
	* NewZealand/01/2020

* BCCDC Public Health Laboratory
	* Canada/BC_02421/2020
	* Canada/BC_13297/2020
	* Canada/BC_17397/2020
	* Canada/BC_25211/2020
	* Canada/BC_35720/2020
	* Canada/BC_37_0-2/2020
	* Canada/BC_40860/2020
	* Canada/BC_41851/2020
	* Canada/BC_64686/2020
	* Canada/BC_65034/2020
	* Canada/BC_66353/2020
	* Canada/BC_69243/2020
	* Canada/BC_78548/2020
	* Canada/BC_83109/2020
	* Canada/BC_83163/2020

* Bamrasnaradura Hospital
	* Nonthaburi/61/2020
	* Nonthaburi/74/2020

* Beijing Institute of Microbiology and Epidemiology
	* pangolin/Guangdong/P2S/2019
	* pangolin/Guangxi/P1E/2017
	* pangolin/Guangxi/P2V/2017
	* pangolin/Guangxi/P3B/2017
	* pangolin/Guangxi/P4L/2017
	* pangolin/Guangxi/P5E/2017
	* pangolin/Guangxi/P5L/2017

* Bundeswehr Institute of Microbiology
	* Germany/BavPat2/2020
	* Germany/BavPat3/2020

* CNR Virus des Infections Respiratoires - France SUD
	* France/RA739/2020

* CR&WISCO GENERAL HOSPITAL
	* Wuhan/HBCDC-HB-05/2020

* California Department of Health
	* USA/CA3/2020
	* USA/CA4/2020
	* USA/CA5/2020

* California Department of Public Health
	* USA/CA-CDPH-UC1/2020
	* USA/CA-CDPH-UC2/2020
	* USA/CA-CDPH-UC3/2020
	* USA/CA-CDPH-UC4/2020
	* USA/CA-CDPH-UC5/2020
	* USA/CA-CDPH-UC6/2020
	* USA/CA-CDPH-UC7/2020
	* USA/CA-CDPH-UC8/2020
	* USA/CA-CDPH-UC9/2020
	* USA/CA1/2020
	* USA/CA2/2020
	* USA/CA6/2020
	* USA/CA7/2020
	* USA/CA8/2020
	* USA/CA9/2020
	* USA/UC-CDPH-UC11/2020

* Center of Medical Microbiology, Virology, and Hospital Hygiene, University of Duesseldorf
	* Germany/NRW-01/2020
	* Germany/NRW-011/2020
	* Germany/NRW-02-1/2020
	* Germany/NRW-03/2020
	* Germany/NRW-04/2020
	* Germany/NRW-05/2020
	* Germany/NRW-06/2020
	* Germany/NRW-07/2020
	* Germany/NRW-08/2020
	* Germany/NRW-09/2020
	* Germany/NRW-10/2020

* Centers for Disease Control, R.O.C. (Taiwan)
	* Taiwan/2/2020

* Centre Hositalier Universitaire de Rouen Laboratoire de Virologie
	* France/N1620/2020

* Centre Hospitalier Compiegne Laboratoire de Biologie
	* France/HF1795/2020
	* France/HF1805/2020
	* France/HF1870/2020
	* France/HF1871/2020
	* France/HF1986/2020
	* France/HF1988/2020
	* France/HF1989/2020
	* France/HF1993/2020
	* France/HF1995/2020
	* France/HF2151/2020
	* France/HF2174/2020

* Centre Hospitalier Regional Universitaire de Nantes Laboratoire de Virologie
	* France/PL1643/2020

* Centre Hospitalier Rene Dubois Laboratoire de Microbiologie - Bat A
	* France/IDF1980/2020

* Centre for Human and Zoonotic Virology (CHAZVY), College of Medicine University of Lagos/Lagos University Teaching Hospital (LUTH), part of the Laboratory Network of the Nigeria Centre for Disease Control (NCDC)
	* Nigeria/Lagos01/2020

* Centre for Infectious Diseases and Microbiology - Public Health
	* Australia/NSW10/2020
	* Australia/NSW12/2020
	* Australia/NSW13/2020
	* Australia/NSW14/2020

* Centre for Infectious Diseases and Microbiology Laboratory Services
	* Australia/NSW01/2020
	* Australia/NSW02/2020
	* Australia/NSW05/2020
	* Australia/NSW06/2020
	* Australia/NSW07/2020
	* Australia/NSW08/2020
	* Australia/NSW09/2020

* Centre for Infectious Diseases and Microbiology- Public Health
	* Australia/NSW11/2020

* Centro Hospital do Porto, E.P.E. - H. Geral de Santo Antonio
	* Portugal/CV62/2020

* Centro Hospitalar e Universitario de Sao Joao, Porto
	* Portugal/CV63/2020

* Charite Universitatsmedizin Berlin, Institute of Virology; Institut fur Mikrobiologie der Bundeswehr, Munich
	* Germany/BavPat1/2020

* Clinica Alemana de Santiago, Chile
	* Chile/Santiago-1/2020

* Clinica Santa Maria, Santiago, Chile
	* Chile/Santiago-2/2020

* Department of Infectious Diseases, Istituto Superiore di Sanita, Roma , Italy
	* Italy/CDG1/2020

* Department of Infectious Diseases, Istituto Superiore di Sanita, Rome, Italy
	* Italy/SPL1/2020

* Department of Infectious and Tropical Diseases, Bichat Claude Bernard Hospital, Paris
	* France/IDF0372-isl/2020
	* France/IDF0372/2020
	* France/IDF0373/2020
	* France/IDF0386-islP1/2020
	* France/IDF0386-islP3/2020
	* France/IDF0515-isl/2020
	* France/IDF0515/2020
	* France/IDF0571/2020

* Department of Internal Medicine, Triemli Hospital
	* Switzerland/1000477102/2020
	* Switzerland/1000477377/2020

* Department of Laboratory Medicine, National Taiwan University Hospital
	* Taiwan/NTU01/2020
	* Taiwan/NTU02/2020
	* Taiwan/NTU03/2020

* Department of Microbiology, Institute for Viral Diseases, College of Medicine, Korea University
	* SouthKorea/KUMC01/2020
	* SouthKorea/KUMC02/2020
	* SouthKorea/KUMC04/2020
	* SouthKorea/KUMC06/2020

* Department of Pathology, Toshima Hospital
	* Japan/TK/20-31-3/2020

* Department of Virology III, National Institute of Infectious Diseases
	* Japan/AI/I-004/2020

* Department of Virology and Immunology, University of Helsinki and Helsinki University Hospital, Huslab Finland
	* Finland/FIN-114/2020
	* Finland/FIN-266/2020
	* Finland/FIN-274/2020
	* Finland/FIN-313/2020
	* Finland/FIN-318/2020
	* Finland/FIN-455/2020
	* Finland/FIN-508/2020
	* Finland/FIN01032020/2020
	* Finland/FIN03032020A/2020
	* Finland/FIN03032020B/2020
	* Finland/FIN03032020C/2020

* Department of Virus and Microbiological Special diagnostics, Statens Serum Institut, Copenhagen, Denmark.
	* Denmark/SSI-101/2020
	* Denmark/SSI-104/2020

* Department of microbiology laboratory,Anhui Provincial Center for Disease Control and Prevention
	* Anhui/SZ005/2020

* Dept. of Pathology, National Institute of Infectious Diseases
	* Japan/NA-20-05-1/2020
	* Japan/OS-20-07-1/2020

* Dept. of Virology III, National Institute of Infectious Diseases
	* Japan/KY-V-029/2020
	* Japan/TY-WK-012/2020
	* Japan/TY-WK-501/2020
	* Japan/TY-WK-521/2020

* Dienst Gezondheid & Jeugd Zuid-Holland Zuid
	* Netherlands/Hardinxveld_Giessendam_1364806/2020

* Division of Infectious Diseases, Department of Internal Medicine, Korea University College of Medicine
	* SouthKorea/KUMC03/2020
	* SouthKorea/KUMC05/2020

* Division of Infectious Diseases, University Hospital Zurich
	* Switzerland/1000477796/2020
	* Switzerland/1000477797/2020
	* Switzerland/1000477806/2020

* Division of Viral Diseases, Center for Laboratory Control of Infectious Diseases, Korea Centers for Diseases Control and Prevention
	* SouthKorea/KCDC05/2020
	* SouthKorea/KCDC06/2020
	* SouthKorea/KCDC07/2020
	* SouthKorea/KCDC12/2020
	* SouthKorea/KCDC24/2020

* Dutch COVID-19 response team
	* Netherlands/Flevoland/1/2020
	* Netherlands/Gelderland/1/2020
	* Netherlands/Gelderland/2/2020
	* Netherlands/Gelderland/3/2020
	* Netherlands/Gelderland_1/2020
	* Netherlands/Limburg/7/2020
	* Netherlands/Limburg_2/2020
	* Netherlands/Limburg_3/2020
	* Netherlands/Limburg_4/2020
	* Netherlands/Limburg_5/2020
	* Netherlands/Limburg_6/2020
	* Netherlands/NA/1/2020
	* Netherlands/NA/10/2020
	* Netherlands/NA/11/2020
	* Netherlands/NA/12/2020
	* Netherlands/NA/13/2020
	* Netherlands/NA/14/2020
	* Netherlands/NA/15/2020
	* Netherlands/NA/16/2020
	* Netherlands/NA/17/2020
	* Netherlands/NA/18/2020
	* Netherlands/NA/19/2020
	* Netherlands/NA/2/2020
	* Netherlands/NA/20/2020
	* Netherlands/NA/21/2020
	* Netherlands/NA/22/2020
	* Netherlands/NA/23/2020
	* Netherlands/NA/24/2020
	* Netherlands/NA/25/2020
	* Netherlands/NA/26/2020
	* Netherlands/NA/27/2020
	* Netherlands/NA/28/2020
	* Netherlands/NA/29/2020
	* Netherlands/NA/30/2020
	* Netherlands/NA/31/2020
	* Netherlands/NA/32/2020
	* Netherlands/NA/33/2020
	* Netherlands/NA/34/2020
	* Netherlands/NA/35/2020
	* Netherlands/NA/4/2020
	* Netherlands/NA/5/2020
	* Netherlands/NA/6/2020
	* Netherlands/NA/7/2020
	* Netherlands/NA/8/2020
	* Netherlands/NA/9/2020
	* Netherlands/NoordBrabant/41/2020
	* Netherlands/NoordBrabant/42/2020
	* Netherlands/NoordBrabant/44/2020
	* Netherlands/NoordBrabant/45/2020
	* Netherlands/NoordBrabant/46/2020
	* Netherlands/NoordBrabant/47/2020
	* Netherlands/NoordBrabant/48/2020
	* Netherlands/NoordBrabant/49/2020
	* Netherlands/NoordBrabant/51/2020
	* Netherlands/NoordBrabant/52/2020
	* Netherlands/NoordBrabant/53/2020
	* Netherlands/NoordBrabant/54/2020
	* Netherlands/NoordBrabant/55/2020
	* Netherlands/NoordBrabant/56/2020
	* Netherlands/NoordBrabant/57/2020
	* Netherlands/NoordBrabant/58/2020
	* Netherlands/NoordBrabant/59/2020
	* Netherlands/NoordBrabant/60/2020
	* Netherlands/NoordBrabant/61/2020
	* Netherlands/NoordBrabant/62/2020
	* Netherlands/NoordBrabant/63/2020
	* Netherlands/NoordBrabant/64/2020
	* Netherlands/NoordBrabant/65/2020
	* Netherlands/NoordBrabant/66/2020
	* Netherlands/NoordBrabant/67/2020
	* Netherlands/NoordBrabant/68/2020
	* Netherlands/NoordBrabant_1/2020
	* Netherlands/NoordBrabant_10/2020
	* Netherlands/NoordBrabant_11/2020
	* Netherlands/NoordBrabant_12/2020
	* Netherlands/NoordBrabant_13/2020
	* Netherlands/NoordBrabant_14/2020
	* Netherlands/NoordBrabant_15/2020
	* Netherlands/NoordBrabant_16/2020
	* Netherlands/NoordBrabant_17/2020
	* Netherlands/NoordBrabant_18/2020
	* Netherlands/NoordBrabant_19/2020
	* Netherlands/NoordBrabant_2/2020
	* Netherlands/NoordBrabant_20/2020
	* Netherlands/NoordBrabant_21/2020
	* Netherlands/NoordBrabant_22/2020
	* Netherlands/NoordBrabant_23/2020
	* Netherlands/NoordBrabant_24/2020
	* Netherlands/NoordBrabant_25/2020
	* Netherlands/NoordBrabant_26/2020
	* Netherlands/NoordBrabant_27/2020
	* Netherlands/NoordBrabant_28/2020
	* Netherlands/NoordBrabant_29/2020
	* Netherlands/NoordBrabant_3/2020
	* Netherlands/NoordBrabant_30/2020
	* Netherlands/NoordBrabant_31/2020
	* Netherlands/NoordBrabant_32/2020
	* Netherlands/NoordBrabant_33/2020
	* Netherlands/NoordBrabant_34/2020
	* Netherlands/NoordBrabant_35/2020
	* Netherlands/NoordBrabant_36/2020
	* Netherlands/NoordBrabant_37/2020
	* Netherlands/NoordBrabant_38/2020
	* Netherlands/NoordBrabant_39/2020
	* Netherlands/NoordBrabant_4/2020
	* Netherlands/NoordBrabant_5/2020
	* Netherlands/NoordBrabant_6/2020
	* Netherlands/NoordHolland/3/2020
	* Netherlands/NoordHolland_1/2020
	* Netherlands/NoordHolland_2/2020
	* Netherlands/Overijssel_1/2020
	* Netherlands/Overijssel_2/2020
	* Netherlands/Utrecht/17/2020
	* Netherlands/Utrecht/18/2020
	* Netherlands/Utrecht/19/2020
	* Netherlands/Utrecht_1/2020
	* Netherlands/Utrecht_10/2020
	* Netherlands/Utrecht_11/2020
	* Netherlands/Utrecht_12/2020
	* Netherlands/Utrecht_13/2020
	* Netherlands/Utrecht_14/2020
	* Netherlands/Utrecht_15/2020
	* Netherlands/Utrecht_16/2020
	* Netherlands/Utrecht_2/2020
	* Netherlands/Utrecht_3/2020
	* Netherlands/Utrecht_4/2020
	* Netherlands/Utrecht_5/2020
	* Netherlands/Utrecht_6/2020
	* Netherlands/Utrecht_7/2020
	* Netherlands/Utrecht_8/2020
	* Netherlands/ZuidHolland/25/2020
	* Netherlands/ZuidHolland/26/2020
	* Netherlands/ZuidHolland/27/2020
	* Netherlands/ZuidHolland/28/2020
	* Netherlands/ZuidHolland/29/2020
	* Netherlands/ZuidHolland/30/2020
	* Netherlands/ZuidHolland/31/2020
	* Netherlands/ZuidHolland_1/2020
	* Netherlands/ZuidHolland_10/2020
	* Netherlands/ZuidHolland_11/2020
	* Netherlands/ZuidHolland_13/2020
	* Netherlands/ZuidHolland_14/2020
	* Netherlands/ZuidHolland_15/2020
	* Netherlands/ZuidHolland_16/2020
	* Netherlands/ZuidHolland_17/2020
	* Netherlands/ZuidHolland_18/2020
	* Netherlands/ZuidHolland_19/2020
	* Netherlands/ZuidHolland_2/2020
	* Netherlands/ZuidHolland_20/2020
	* Netherlands/ZuidHolland_21/2020
	* Netherlands/ZuidHolland_22/2020
	* Netherlands/ZuidHolland_23/2020
	* Netherlands/ZuidHolland_24/2020
	* Netherlands/ZuidHolland_5/2020
	* Netherlands/ZuidHolland_6/2020
	* Netherlands/ZuidHolland_7/2020
	* Netherlands/ZuidHolland_8/2020
	* Netherlands/ZuidHolland_9/2020

* ErasmusMC
	* Netherlands/Nieuwendijk_1363582/2020
	* Netherlands/Rotterdam_1363790/2020

* Foundation Elisabeth-Tweesteden Ziekenhuis
	* Netherlands/Tilburg_1363354/2020
	* Netherlands/Tilburg_1364286/2020

* Foundation Pamm
	* Netherlands/Berlicum_1363564/2020

* Fujian Center for Disease Control and Prevention
	* Fujian/13/2020
	* Fujian/8/2020

* General Hospital of Central Theater Command of People's Liberation Army of China
	* Wuhan/WH01/2019
	* Wuhan/WH02/2019
	* Wuhan/WH03/2020
	* Wuhan/WH04/2020

* Gorgas Memorial Institute for Health Studies
	* Panama/328677/2020

* Guangdong Provincial Center for Diseases Control and Prevention; Guangdong Provincial Public Health
	* Foshan/20SF207/2020
	* Foshan/20SF210/2020
	* Foshan/20SF211/2020
	* Guangdong/20SF012/2020
	* Guangdong/20SF013/2020
	* Guangdong/20SF014/2020
	* Guangdong/20SF025/2020
	* Guangdong/20SF028/2020
	* Guangdong/20SF040/2020

* Guangdong Provincial Center for Diseases Control and Prevention; Guangdong Provinical Public Health
	* Guangdong/20SF174/2020
	* Guangzhou/20SF206/2020

* Guangdong Provincial Center for Diseases Control and Prevention;Guangdong Provincial Institute of Public Health
	* Guangdong/20SF201/2020

* Guangdong Provincial Institution of Public Health, Guangdong Provinical Center for Disease Control and Prevention
	* Guangdong/2020XN4239-P0034/2020
	* Guangdong/2020XN4243-P0035/2020
	* Guangdong/2020XN4273-P0036/2020
	* Guangdong/2020XN4276-P0037/2020
	* Guangdong/2020XN4291-P0038/2020
	* Guangdong/2020XN4373-P0039/2020
	* Guangdong/2020XN4433-P0040/2020
	* Guangdong/2020XN4448-P0002/2020
	* Guangdong/2020XN4459-P0041/2020
	* Guangdong/2020XN4475-P0042/2020
	* Guangdong/DG-S2-P0054/2020
	* Guangdong/DG-S41-P0056/2020
	* Guangdong/DG-S6-P0055/2020
	* Guangdong/DG-S9-P0045/2020
	* Guangdong/FS-S29-P0051/2020
	* Guangdong/FS-S30-P0052/2020
	* Guangdong/FS-S34-P0015/2020
	* Guangdong/FS-S42-P0046/2020
	* Guangdong/FS-S48-P0047/2020
	* Guangdong/FS-S50-P0053/2020
	* Guangdong/GD2020012-P0022/2020
	* Guangdong/GD2020016-P0011/2020
	* Guangdong/GD2020080-P0010/2020
	* Guangdong/GD2020085-P0043/2020
	* Guangdong/GD2020086-P0021/2020
	* Guangdong/GD2020087-P0008/2020
	* Guangdong/GD2020115-P0009/2020
	* Guangdong/GD2020134-P0031/2020
	* Guangdong/GD2020139-P0007/2020
	* Guangdong/GD2020227-P0029/2020
	* Guangdong/GD2020233-P0027/2020
	* Guangdong/GD2020234-P0023/2020
	* Guangdong/GD2020241-P0013/2020
	* Guangdong/GD2020246-P0028/2020
	* Guangdong/GD2020258-P0018/2020
	* Guangdong/GDFS2020052-P0025/2020
	* Guangdong/GDFS2020054-P0005/2020
	* Guangdong/GDFS2020056-P0044/2020
	* Guangdong/GDFS2020127-P0026/2020
	* Guangdong/GDSZ202004-P0004/2020
	* Guangdong/GDSZ202008-P0020/2020
	* Guangdong/GDSZ202009-P0032/2020
	* Guangdong/GDSZ202013-P0014/2020
	* Guangdong/GDSZ202015-P0019/2020
	* Guangdong/GZ-S6-P0050/2020
	* Guangdong/JM-S1-P0062/2020
	* Guangdong/MM-S1-P0048/2020
	* Guangdong/SZ-N128-P0057/2020
	* Guangdong/SZ-N59-P0049/2020
	* Guangdong/ZH-N22-P0059/2020
	* Guangdong/ZH-S33-P0058/2020
	* Guangdong/ZQ-S2-P0061/2020
	* Guangdong/ZS-S6-P0060/2020

* HUS Diagnostiikkakeskus, Hallinto
	* Finland/FIN-25/2020

* Hangzhou Center for Disease Control and Prevention
	* Hangzhou/HZCDC0001/2020

* Hangzhou Center for Disease and Control Microbiology Lab
	* Hangzhou/HZ-1/2020

* Harborview Medical Center
	* USA/WA3-UW1/2020
	* USA/WA9-UW6/2020

* Hong Kong Department of Health
	* HongKong/VB20024950/2020
	* HongKong/VB20026565/2020
	* HongKong/VM20001061/2020
	* HongKong/case42_VM20002493/2020
	* HongKong/case48_VM20002507/2020
	* HongKong/case49_VM20002508/2020
	* HongKong/case52_VM20002582/2020
	* HongKong/case78_VM20002849/2020
	* HongKong/case85_VM20002868/2020
	* HongKong/case90_VM20002907/2020

* Hopital Instruction des Armees - BEGIN
	* France/IDF2075/2020

* Hopital Robert Debre Laboratoire de Virologie
	* France/GE1973/2020
	* France/GE1977/2020

* Hopitaux universitaires de Geneve Laboratoire de Virologie
	* Switzerland/AG7120/2020
	* Switzerland/BE2536/2020
	* Switzerland/BE6651/2020
	* Switzerland/BS0914/2020
	* Switzerland/GE0199/2020
	* Switzerland/GE062072020
	* Switzerland/GE1402/2020
	* Switzerland/GE1422/2020
	* Switzerland/GE4135/2020
	* Switzerland/GE4984/2020
	* Switzerland/GE6679/2020
	* Switzerland/GE8102/2020
	* Switzerland/GR2988/2020
	* Switzerland/GR3043/2020
	* Switzerland/SZ1417/2020
	* Switzerland/TI2045/2020
	* Switzerland/VD0503/2020

* Hospital Israelita Albert Einstein
	* Brazil/SPBR-01/2020
	* Brazil/SPBR-02/2020
	* Brazil/SPBR-03/2020

* Hospital Sao Joaquim Beneficencia Portuguesa
	* Brazil/SPBR-04/2020
	* Brazil/SPBR-05/2020
	* Brazil/SPBR-06/2020

* Hospital de Talca, Chile
	* Chile/Talca-1/2020
	* Chile/Talca-2/2020

* IL Department of Public Health Chicago Laboratory
	* USA/IL1/2020
	* USA/IL2/2020

* INMI Lazzaro Spallanzani IRCCS
	* Italy/INMI1-cs/2020
	* Italy/INMI1-isl/2020

* Indian Council of Medical Research - National Institute of Virology
	* India/1-27/2020

* Indian Council of Medical Research-National Institute of Virology
	* India/1-31/2020

* Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College
	* Wuhan/IPBCAMS-WH-01/2019
	* Wuhan/IPBCAMS-WH-02/2019
	* Wuhan/IPBCAMS-WH-03/2019
	* Wuhan/IPBCAMS-WH-04/2019
	* Wuhan/IPBCAMS-WH-05/2020

* Institute of Viral Disease Control and Prevention, China CDC
	* Wuhan/IVDC-HB-envF13-20/2020
	* Wuhan/IVDC-HB-envF13-21/2020
	* Wuhan/IVDC-HB-envF13/2020
	* Wuhan/IVDC-HB-envF54/2020

* Instituto Nacional de Enfermedades Respiratorias
	* Mexico/CDMX-InDRE_01/2020

* Jingzhou Center for Disease Control and Prevention
	* Jingzhou/HBCDC-HB-01/2020

* KU Leuven, Clincal and Epidemiological Virology
	* Belgium/BM-03012/2020

* KU Leuven, Clinical and Epidemiological Virology
	* Belgium/BA-02291/2020
	* Belgium/BC-03016/2020
	* Belgium/GHB-03021/2020
	* Belgium/QKJ-03015/2020
	* Belgium/SH-03014/2020
	* Belgium/VAG-03013/2020
	* Belgium/VLM-03011/2020

* Klinik Hirslanden Zurich
	* Switzerland/1000477757/2020

* Korea Centers for Disease Control & Prevention (KCDC) Center for Laboratory Control of Infectious Diseases Division of Viral Diseases
	* SouthKorea/KCDC03/2020

* LACEN RJ - Laboratorio Central de Saude Publica Noel Nutels
	* Brazil-RJ/314/2020

* LACEN/ES - Laboratorio Central de Saude Publica do Espirito Santo
	* Brazil/ES-225/2020

* Laboratoire National de Sante
	* Luxembourg/Lux1/2020

* Laboratoire de Virologie Institut de Virologie - INSERM U 1109 Hopitaux Universitaires de Strasbourg
	* France/GE1583/2020

* Laboratoire de Virologie, HUG
	* Switzerland/AG0361/2020
	* Switzerland/BL0902/2020
	* Switzerland/GE3121/2020
	* Switzerland/GE3895/2020
	* Switzerland/GE5373/2020
	* Switzerland/GE9586/2020
	* Switzerland/TI9486/2020
	* Switzerland/VD5615/2020

* Laboratorio Central de Saude Publica Professor Goncalo Moniz  LACEN/BA
	* Brazil/BA-312/2020

* Laboratorio di Microbiologia e Virologia, Universita Vita-Salute San Raffaele, Milano
	* Italy/UniSR1/2020

* Laboratory Medicine
	* Taiwan/CGMH-CGU-01/2020
	* Taiwan/CGMH-CGU-03/2020

* Laboratory of Molecular Virology, Pontificia Universidad Catolica de Chile
	* Chile/Santiago_op2d1/2020
	* Chile/Santiago_op3d1/2020
	* Chile/Santiago_op4d1/2020

* Lapland Central Hospital
	* Finland/1/2020

* MHC Brabant Zuidoost
	* Netherlands/Eindhoven_1363782/2020

* MHC Drente
	* Netherlands/Dalen_1363624/2020

* MHC Flevoland
	* Netherlands/Zeewolde_1365080/2020

* MHC Gooi & Vechtstreek
	* Netherlands/Blaricum_1364780/2020
	* Netherlands/Naarden_1364774/2020

* MHC Haaglanden
	* Netherlands/Nootdorp_1364222/2020

* MHC Hart voor Brabant
	* Netherlands/Oisterwijk_1364072/2020

* MHC Kennemerland
	* Netherlands/Haarlem_1363688/2020

* MHC Rotterdam-Rijnmond
	* Netherlands/Rotterdam_1364040/2020

* MHC Utrecht
	* Netherlands/Utrecht_1363564/2020
	* Netherlands/Utrecht_1363628/2020
	* Netherlands/Utrecht_1364066/2020

* MHC West-Brabant
	* Netherlands/Andel_1365066/2020
	* Netherlands/Helmond_1363548/2020

* MSHS Clinical Microbiology Laboratories
	* USA/NY1-PV08001/2020
	* USA/NY2-PV08100/2020

* Massachusetts Department of Public Health
	* USA/MA1/2020

* Minnesota Department of Health, Public Health Laboratory
	* USA/MN1-MDH1/2020
	* USA/MN2-MDH2/2020
	* USA/MN3-MDH3/2020

* Monash Medical Centre
	* Australia/VIC01/2020

* NHC Key laboratory of Enteric Pathogenic Microbiology, Institute of Pathogenic Microbiology
	* Jiangsu/JS01/2020
	* Jiangsu/JS02/2020
	* Jiangsu/JS03/2020

* NYU Langone Health
	* USA/NY-NYUMC1/2020

* National Centre for Infectious Diseases
	* Singapore/12/2020
	* Singapore/13/2020
	* Singapore/14/2020
	* Singapore/3/2020
	* Singapore/4/2020

* National Influenza Center - National Institute of Hygiene and Epidemiology (NIHE)
	* Vietnam/VR03-38142/2020

* National Influenza Centre, National Public Health Laboratory, Kathmandu, Nepal
	* Nepal/61/2020

* National Institute for Viral Disease Control and Prevention, China CDC
	* Beijing/IVDC-BJ-005/2020
	* Chongqing/IVDC-CQ-001/2020
	* Henan/IVDC-HeN-002/2020
	* Jiangsu/IVDC-JS-001/2020
	* Jiangxi/IVDC-JX-002/2020
	* Shandong/IVDC-SD-001/2020
	* Shanghai/IVDC-SH-001/2020
	* Sichuan/IVDC-SC-001/2020
	* Wuhan/IVDC-HB-01/2019
	* Wuhan/IVDC-HB-04/2020
	* Wuhan/IVDC-HB-05/2019
	* Yunnan/IVDC-YN-003/2020

* National Public Health Laboratory
	* Singapore/11/2020

* National Public Health Laboratory, National Centre for Infectious Diseases
	* Singapore/10/2020
	* Singapore/7/2020
	* Singapore/8/2020
	* Singapore/9/2020

* Pathology Queensland
	* Australia/QLD01/2020
	* Australia/QLD02/2020
	* Australia/QLD03/2020
	* Australia/QLD04/2020
	* Australia/QLD09/2020

* Providence Regional Medical Center
	* USA/WA1/2020

* Public Health Ontario Laboratory
	* Canada/ON-PHL2445/2020
	* Canada/ON-VIDO-01/2020

* R. G. Lugar Center for Public Health Research,  National Center for Disease Control and Public Health (NCDC) of Georgia.
	* Georgia/Tb-468/2020
	* Georgia/Tb-477/2020
	* Georgia/Tb-54/2020
	* Georgia/Tb-82/2020

* RIVM
	* Netherlands/Delft_1363424/2020
	* Netherlands/Diemen_1363454/2020
	* Netherlands/Loon_op_zand_1363512/2020
	* Netherlands/Oss_1363500/2020
	* NetherlandsL/Houten_1363498/2020

* Regional Virus Laboratory, Belfast
	* NorthernIreland/HSCNI01/2020

* Respiratory Virus Unit, Microbiology Services Colindale, Public Health England
	* England/01/2020
	* England/02/2020
	* England/09c/2020
	* England/200641094/2020
	* England/200690245/2020
	* England/200690300/2020
	* England/200690306/2020
	* England/200690756/2020
	* England/200940527/2020
	* England/200960041/2020
	* England/200960515/2020
	* England/200981386/2020
	* England/200990002/2020
	* England/200990006/2020
	* England/20099038206/2020
	* England/200990660/2020
	* England/200990723/2020
	* England/200990724/2020
	* England/200990725/2020
	* England/20099079106/2020
	* England/20099107406/2020
	* England/200991076/2020
	* England/201000003/2020
	* England/20100001406/2020
	* England/20100004706/2020
	* England/20100004806/2020
	* England/20100005406/2020
	* England/20100022706/2020
	* England/20100023206/2020
	* England/20100024006/2020
	* England/20100077906/2020
	* England/20100121006/2020
	* England/20100121007/2020
	* England/20100122106/2020
	* England/20100122107/2020
	* England/20102000106/2020
	* England/20102000206/2020
	* England/20102000306/2020
	* England/20102000506/2020
	* England/20102000906/2020
	* England/20102068506/2020
	* England/201040081/2020
	* England/201040141/2020
	* England/20110003506/2020

* Seattle Flu Study
	* USA/WA-S2/2020
	* USA/WA-S3/2020

* Second Hospital of Anhui Medical University
	* Hefei/2/2020

* Serology, Virology and OTDS Laboratories (SAViD), NSW Health Pathology Randwick
	* Australia/NSW03/2020

* Servicio Microbiologia, Hospital Clinico Universitario, Valencia
	* Spain/Valencia3/2020

* Servicio Microbiologia. Hospital Clinico Universitario. Valencia.
	* Spain/Valencia1/2020
	* Spain/Valencia2/2020

* Shandong Provincial Center for Disease Control and Prevention
	* Shandong/LY001/2020
	* Shandong/LY002/2020
	* Shandong/LY003/2020
	* Shandong/LY004/2020
	* Shandong/LY005/2020
	* Shandong/LY006/2020
	* Shandong/LY007/2020
	* Shandong/LY008/2020

* Shenzhen Key Laboratory of Pathogen and Immunity, National Clinical Research Center for Infectious Disease, Shenzhen Third People's Hospital
	* Shenzhen/SZTH-002/2020
	* Shenzhen/SZTH-003/2020
	* Shenzhen/SZTH-004/2020

* Shenzhen Third People's Hospital
	* Shenzhen/SZTH-001/2020

* Singapore General Hospital
	* Singapore/1/2020
	* Singapore/2/2020

* Singapore General Hospital, Molecular Laboratory, Division of Pathology
	* Singapore/5/2020
	* Singapore/6/2020

* Sorbonne Universite, Inserm et Assistance Publique-Hopitaux de Paris (Pitie Salpetriere)
	* France/IDF0626/2020

* South China Agricultural University
	* pangolin/Guangdong/1/2019

* State Health Office Baden-Wuerttemberg
	* Germany/Baden-Wuerttemberg-1/2020

* State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, National Clinical Research Center for Infectious Diseases, First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China. 310003
	* Hangzhou/ZJU-01/2020
	* Hangzhou/ZJU-05/2020

* State Key Laboratory of Respiratory Disease, National Clinical Research Center for Respiratory Disease, Guangzhou Institute of Respiratory Health, the First Affiliated Hospital of Guangzhou Medical University
	* Guangzhou/GZMU0014/2020
	* Guangzhou/GZMU0016/2020
	* Guangzhou/GZMU0030/2020
	* Guangzhou/GZMU0031/2020
	* Guangzhou/GZMU0042/2020
	* Guangzhou/GZMU0044/2020
	* Guangzhou/GZMU0047/2020
	* Guangzhou/GZMU0048/2020

* Tai Lung Veterinary Laboratory, Agriculture, Fisheries and Conservation Department
	* canine/HongKong/20-02756/2020

* Taiwan Centers for Disease Control
	* Taiwan/3/2020
	* Taiwan/4/2020

* Texas Department of State Health Services
	* USA/TX1/2020

* The Central Hospital Of Wuhan
	* Wuhan/HBCDC-HB-02/2020

* The National Institute of Public Health Center for Epidemiology and Microbiology
	* CzechRepublic/951/2020

* The University of Hong Kong - Shenzhen Hospital
	* Shenzhen/HKU-SZ-002/2020
	* Shenzhen/HKU-SZ-005/2020

* Tianmen Center for Disease Control and Prevention
	* Tianmen/HBCDC-HB-07/2020

* UCD National Virus Reference Laboratory
	* Ireland/COR-20134/2020
	* Ireland/Dublin-19072/2020
	* Ireland/Limerick-19933/2020
	* Ireland/Limerick-19934/2020
	* Ireland/Limerick-19935/2020

* UW Virology Lab
	* USA/WA-UW15/2020
	* USA/WA-UW16/2020
	* USA/WA-UW17/2020
	* USA/WA-UW18/2020
	* USA/WA-UW19/2020
	* USA/WA-UW20/2020
	* USA/WA-UW21/2020
	* USA/WA-UW22/2020
	* USA/WA-UW23/2020
	* USA/WA-UW24/2020
	* USA/WA-UW25/2020
	* USA/WA-UW26/2020
	* USA/WA-UW27/2020
	* USA/WA-UW28/2020
	* USA/WA-UW29/2020
	* USA/WA-UW30/2020
	* USA/WA-UW31/2020
	* USA/WA-UW32/2020
	* USA/WA-UW33/2020
	* USA/WA-UW34/2020
	* USA/WA-UW35/2020
	* USA/WA-UW40/2020
	* USA/WA-UW41/2020
	* USA/WA-UW42/2020
	* USA/WA-UW43/2020
	* USA/WA-UW44/2020
	* USA/WA-UW45/2020
	* USA/WA-UW46/2020
	* USA/WA-UW47/2020
	* USA/WA-UW48/2020
	* USA/WA-UW49/2020
	* USA/WA-UW50/2020
	* USA/WA-UW51/2020
	* USA/WA-UW52/2020
	* USA/WA-UW53/2020
	* USA/WA-UW54/2020
	* USA/WA-UW55/2020
	* USA/WA-UW56/2020
	* USA/WA-UW57/2020
	* USA/WA-UW58/2020
	* USA/WA-UW59/2020
	* USA/WA-UW60/2020
	* USA/WA-UW61/2020
	* USA/WA-UW62/2020
	* USA/WA-UW63/2020
	* USA/WA-UW64/2020
	* USA/WA-UW65/2020
	* USA/WA-UW66/2020
	* USA/WA-UW67/2020
	* USA/WA-UW68/2020
	* USA/WA-UW69/2020
	* USA/WA-UW70/2020
	* USA/WA-UW71/2020
	* USA/WA-UW72/2020
	* USA/WA-UW73/2020
	* USA/WA-UW74/2020
	* USA/WA-UW75/2020
	* USA/WA-UW76/2020
	* USA/WA11-UW7/2020
	* USA/WA12-UW8/2020
	* USA/WA13-UW9/2020
	* USA/WA14-UW10/2020
	* USA/WA15-UW11/2020
	* USA/WA16-UW12/2020
	* USA/WA17-UW13/2020
	* USA/WA18-UW14/2020

* Union Hospital of Tongji Medical College, Huazhong University of Science and Technology
	* Wuhan/HBCDC-HB-03/2020
	* Wuhan/HBCDC-HB-04/2020

* Unknown
	* France/BFC2094/2020
	* Netherlands/Coevorden_1363618/2020

* Utah Public Health Laboratory
	* USA/UPHL-01/2020
	* USA/UPHL-02/2020
	* USA/UPHL-03/2020
	* USA/UPHL-04/2020
	* USA/UPHL-05/2020
	* USA/UPHL-06/2020

* Valley Medical Center
	* USA/WA8-UW5/2020

* Viral Respiratory Lab, National Institute for Biomedical Research (INRB)
	* Congo/KN-13/2020

* Virology Department, Royal Infirmary of Edinburgh, NHS Lothian
	* Scotland/EDB003/2020
	* Scotland/EDB004/2020
	* Scotland/EDB005/2020
	* Scotland/EDB006/2020
	* Scotland/EDB007/2020
	* Scotland/EDB008/2020
	* Scotland/EDB009/2020
	* Scotland/EDB011/2020
	* Scotland/EDB012/2020
	* Scotland/EDB013/2020

* Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust
	* England/Sheff01/2020
	* England/Sheff02/2020

* Virology Unit, Institut Pasteur du Cambodge.
	* Cambodia/0012/2020

* WA State Department of Health
	* USA/WA1-A12/2020

* WHO National Influenza Centre Russian Federation
	* Russia/StPetersburg-3524/2020

* Wales Specialist Virology Centre
	* Wales/PHW03/2020
	* Wales/PHW04/2020
	* Wales/PHW05/2020
	* Wales/PHW06/2020
	* Wales/PHW1/2020
	* Wales/PHW10/2020
	* Wales/PHW12/2020
	* Wales/PHW13/2020
	* Wales/PHW2/2020
	* Wales/PHW27/2020
	* Wales/PHW28/2020
	* Wales/PHW33/2020
	* Wales/PHW37/2020
	* Wales/PHW38/2020

* Washington State Department of Health
	* USA/WA1-F6/2020
	* USA/WA2/2020

* Washington State Public Health Lab
	* USA/WA4-UW2/2020
	* USA/WA6-UW3/2020
	* USA/WA7-UW4/2020

* Weifang Center for Disease Control and Prevention
	* China/WF0001/2020
	* China/WF0002/2020
	* China/WF0003/2020
	* China/WF0004/2020
	* China/WF0006/2020
	* China/WF0009/2020
	* China/WF0012/2020
	* China/WF0014/2020
	* China/WF0015/2020
	* China/WF0016/2020
	* China/WF0017/2020
	* China/WF0018/2020
	* China/WF0019/2020
	* China/WF0020/2020
	* China/WF0021/2020
	* China/WF0023/2020
	* China/WF0024/2020
	* China/WF0026/2020
	* China/WF0028/2020
	* China/WF0029/2020

* West of Scotland Specialist Virology Centre, NHSGGC
	* Scotland/CVR01/2020
	* Scotland/CVR02/2020
	* Scotland/CVR03/2020
	* Scotland/CVR04/2020
	* Scotland/CVR05/2020
	* Scotland/CVR06/2020
	* Scotland/CVR07/2020
	* Scotland/CVR10/2020

* Wisconsin Department of Health Services
	* USA/WI1/2020

* Wuhan Fourth Hospital
	* Wuhan/WH05/2020

* Wuhan Institute of Virology, Chinese Academy of Sciences
	* bat/Yunnan/RaTG13/2013

* Wuhan Jinyintan Hospital
	* Wuhan/HBCDC-HB-01/2019
	* Wuhan/HBCDC-HB-02/2019
	* Wuhan/HBCDC-HB-03/2019
	* Wuhan/HBCDC-HB-04/2019
	* Wuhan/WIV02/2019
	* Wuhan/WIV04/2019
	* Wuhan/WIV05/2019
	* Wuhan/WIV06/2019
	* Wuhan/WIV07/2019

* Wuhan Lung Hospital
	* Wuhan/HBCDC-HB-06/2020

* Yongchuan District Center for Disease Control and Prevention
	* Chongqing/YC01/2020

* Zhejiang Provincial Center for Disease Control and Prevention
	* Zhejiang/WZ-01/2020
	* Zhejiang/WZ-02/2020

* Zhongxian Center for Disease Control and Prevention
	* Chongqing/ZX01/2020