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IARCbioinfo/needlestack

Multi-sample somatic variant caller
  • R
  • 49
  • Updated
    on Jan 27, 2022
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IARCbioinfo/IARC-nf

List of IARC bioinformatics nextflow pipelines
  • 49
  • Updated
    on Jan 9
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IARCbioinfo/alignment-nf

Whole Exome/Whole Genome Sequencing alignment pipeline
  • Nextflow
  • 28
  • Updated
    on Sep 18, 2024
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IARCbioinfo/RNAseq-nf

RNAseq analysis pipeline
  • HTML
  • 24
  • Updated
    on Jun 14, 2022
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IARCbioinfo/mutect-nf

Mutect pipeline with Nextflow
  • Nextflow
  • 9
  • Updated
    on Apr 30, 2024
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IARCbioinfo/nextflow-course-2018

IARC nextflow course for pipeline users
  • 7
  • Updated
    on Jun 1, 2018
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IARCbioinfo/template-nf

Empty template for nextflow pipelines
  • HTML
  • 5
  • Updated
    on May 26, 2020
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IARCbioinfo/abra-nf

Nextflow pipeline for ABRA (Assembly Based ReAligner)
  • Nextflow
  • 4
  • Updated
    on Jun 9, 2021
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IARCbioinfo/conpair-nf

Nextflow pipeline for Conpair (concordance and contamination estimator)
  • Nextflow
  • 3
  • Updated
    on Jun 22, 2018
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IARCbioinfo/addreplacerg-nf

Apply samtools addreplacerg to add a new read group and assign all reads to it in a BAM file
  • 3
  • Updated
    on Jan 27, 2017
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