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# this is a script to make a copy of the anas file and relabell it as a ro (reorient file. This is so that we can reorient the o,0,0 position and still keep the original file.
#this goes into the csv file containing the T1 paths and names variable d for each line - make sure this is updated with all the T1 directores and that they have been changed to anas
for d in $(cat /sdata/images/projects/ASD_MM/1/datafiles/T1files)
do
# this reads out the pathname and then has awk take the participant information bit (note, normally awk tries to go into a file, but this stategy just reads the directory path