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# this is a script to make a new directory to process VBM analysis because I am not sure if it is the same segmentation that bill did. It creates a new directory called vbm1 with the subject alias and then copies the anas files into that foled. It searches through a list of path names which you created previously for T1 files and then removes the participant information part of the pathname (for example - asd_02) and then adds this to the new directory name
#this goes into the csv file containing the T1 paths and names variable d for each line - make sure this is updated with all the T1 directores and that they have been changed to anas
for d in $(cat /sdata/images/projects/ASD_MM/1/datafiles/T1files)
do
# this reads out the pathname and then has awk take the participant information bit (note, normally awk tries to go into a file, but this stategy just reads the directory path