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Importing Mass Spec Imaging Data into SpatialData #225

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blakesells7 opened this issue Oct 23, 2024 · 0 comments
Open

Importing Mass Spec Imaging Data into SpatialData #225

blakesells7 opened this issue Oct 23, 2024 · 0 comments

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@blakesells7
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I am currently trying to import mass spec imaging data by converting this to a .h5 to mimic the Visium file formatting. I have reached a point where the error is: ValueError: Versions older than V3 are not supported. Are there any suggestions for how to work with alternatively formatted data or mimicing the Visium V3 formatting? My data contains X and Y coordinates as well as feature intensities for each spot in my mass spec imaging dataset. This data is for spatial glycans, so I cannot easily use the metaspace_converter package. Thanks!

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