Adding 'max_iter_harmony' arguement into external.pp.harmony_integrate

[shihsama]

What kind of feature would you like to request?

Additional function parameters / changed functionality / changed defaults?

Please describe your wishes

Hi,
So glad to see that harmony is used in scanpy. As a former R harmony user, I found external.pp.harmony_integrate would stop after the max iteration of 10. Then I checked the original funtion run_harmony(). The default value of max_iter_harmony was 10. Therefore, could you please pass the 'max_iter_harmony’ arguement to external.pp.harmony_integrate() for users to fit their personal datasets?
Thanks for your attention!

[maltekuehl]

This should already be possible, as you can pass any keyword arguments to harmony_integrate that will be passed on to run_harmony, see: https://github.com/scverse/scanpy/blob/1.11.0/src/scanpy/external/pp/_harmony_integrate.py#L57

[shihsama]

This should already be possible, as you can pass any keyword arguments to harmony_integrate that will be passed on to run_harmony, see: https://github.com/scverse/scanpy/blob/1.11.0/src/scanpy/external/pp/_harmony_integrate.py#L57

Thank you friend! It works