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Description
Please make sure these conditions are met
- I have checked that this issue has not already been reported.
- I have confirmed this bug exists on the latest version of scanpy.
- (optional) I have confirmed this bug exists on the main branch of scanpy.
What happened?
It seems that plot violin is passing the density argument to seaborne twice
Minimal code sample
sc.pl.violin(adata, groupby="condition", use_raw=False, stripplot=False, keys="pct.mt", density_norm="area")
Error output
File ~/miniconda3/envs/scanpy/lib/python3.10/site-packages/legacy_api_wrap/__init__.py:80, in legacy_api.<locals>.wrapper.<locals>.fn_compatible(*args_all, **kw)
77 @wraps(fn)
78 def fn_compatible(*args_all: P.args, **kw: P.kwargs) -> R:
79 if len(args_all) <= n_positional:
---> 80 return fn(*args_all, **kw)
82 args_pos: P.args
83 args_pos, args_rest = args_all[:n_positional], args_all[n_positional:]
File ~/miniconda3/envs/scanpy/lib/python3.10/site-packages/scanpy/plotting/_anndata.py:907, in violin(adata, keys, groupby, log, use_raw, stripplot, jitter, size, layer, scale, order, multi_panel, xlabel, ylabel, rotation, show, save, ax, **kwds)
905 axs = [ax]
906 for ax, y, ylab in zip(axs, ys, ylabel):
--> 907 ax = sns.violinplot(
908 x=x,
909 y=y,
910 data=obs_tidy,
911 order=order,
912 orient="vertical",
913 density_norm=scale,
914 ax=ax,
915 **kwds,
916 )
917 if stripplot:
918 ax = sns.stripplot(
919 x=x,
920 y=y,
(...)
926 ax=ax,
927 )
TypeError: seaborn.categorical.violinplot() got multiple values for keyword argument 'density_norm'
Versions
1.10.1
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