From e07eed7de6e0290f8fd3021ea592ae3e8eb157b7 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=A9r=C3=A9mie=20Kalfon?= <jkobject@gmail.com>
Date: Sat, 10 Aug 2024 13:43:20 +0200
Subject: [PATCH 1/4] Create meta.yaml

---
 packages/scPRINT/meta.yaml | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)
 create mode 100644 packages/scPRINT/meta.yaml

diff --git a/packages/scPRINT/meta.yaml b/packages/scPRINT/meta.yaml
new file mode 100644
index 0000000..7ec8723
--- /dev/null
+++ b/packages/scPRINT/meta.yaml
@@ -0,0 +1,26 @@
+name: scPRINT
+description: |
+  A single cell foundation model for Gene network inference and more...
+project_home: https://github.com/cantinilab/scPRINT
+documentation_home: https://jkobject.com/scPRINT
+publications:
+  - 10.1101/2024.07.29.605556
+install:
+  pypi: scprint
+tags:
+  - foundation model
+  - single cell
+  - RNAseq
+  - gene network inference
+  - denoising
+  - zero imputation
+  - label prediction
+  - zero shot
+  - embedding
+  - pytorch
+  - lightning
+license: MIT
+version: v1.0.12
+authors:
+  - jkobject (jeremie kalfon)
+test_command: pip install . && make test

From 16dcf19fd5fe1094f79778afbbfb3d76f80e5d56 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=A9r=C3=A9mie=20Kalfon?= <jkobject@gmail.com>
Date: Sat, 10 Aug 2024 13:43:42 +0200
Subject: [PATCH 2/4] Create meta.yaml

---
 packages/scDataLoader/meta.yaml | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)
 create mode 100644 packages/scDataLoader/meta.yaml

diff --git a/packages/scDataLoader/meta.yaml b/packages/scDataLoader/meta.yaml
new file mode 100644
index 0000000..02d5a92
--- /dev/null
+++ b/packages/scDataLoader/meta.yaml
@@ -0,0 +1,24 @@
+name: scDataLoader
+description: |
+  A dataloader for large single cell databases like cellxgene.
+  Does weighted random sampling, downloading and preprocessing.
+  works with anndata, zarr, and h5ad files.
+project_home: https://github.com/jkobject/scDataLoader
+documentation_home: https://jkobject.com/scDataLoader
+publications:
+  - 10.1101/2024.07.29.605556
+install:
+  pypi: scdataloader
+tags:
+  - dataloader
+  - single cell
+  - RNAseq
+  - pytorch
+  - lightning
+  - cellxgene
+  - preprocessing
+license: MIT
+version: v1.0.1
+authors:
+  - jkobject (jeremie kalfon)
+test_command: pip install . && make test

From 2104287d01475ad2324ce48953d398237622230c Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=A9r=C3=A9mie=20Kalfon?= <jkobject@gmail.com>
Date: Sat, 10 Aug 2024 13:46:47 +0200
Subject: [PATCH 3/4] Create meta.yaml

---
 packages/benGRN/meta.yaml | 20 ++++++++++++++++++++
 1 file changed, 20 insertions(+)
 create mode 100644 packages/benGRN/meta.yaml

diff --git a/packages/benGRN/meta.yaml b/packages/benGRN/meta.yaml
new file mode 100644
index 0000000..2c1948f
--- /dev/null
+++ b/packages/benGRN/meta.yaml
@@ -0,0 +1,20 @@
+name: benGRN
+description: |
+  Benchmarking tool for gene network inference from single cell RNAseq methods.
+  It uses the grnndata/anndata modality and only contains biological ground truth networks
+project_home: https://github.com/jkobject/benGRN
+documentation_home: https://jkobject.com/benGRN
+publications:
+  - 10.1101/2024.07.29.605556
+install:
+  pypi: bengrn
+tags:
+  - single cell
+  - RNAseq
+  - gene network inference
+  - benchmark
+license: MIT
+version: v1.0.1
+authors:
+  - jkobject (jeremie kalfon)
+test_command: pip install . && make test

From ee979425b858af3cec514c6775a448ddf91c0894 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=A9r=C3=A9mie=20Kalfon?= <jkobject@gmail.com>
Date: Sat, 10 Aug 2024 13:47:27 +0200
Subject: [PATCH 4/4] Create meta.yaml

---
 packages/GRnnData/meta.yaml | 21 +++++++++++++++++++++
 1 file changed, 21 insertions(+)
 create mode 100644 packages/GRnnData/meta.yaml

diff --git a/packages/GRnnData/meta.yaml b/packages/GRnnData/meta.yaml
new file mode 100644
index 0000000..0a4ebbf
--- /dev/null
+++ b/packages/GRnnData/meta.yaml
@@ -0,0 +1,21 @@
+name: GRnnData
+description: |
+  An onverload of anndata to more easily work with gene networks.
+  Allows easy conversion between anndata and grnndata and provide loads of usefull utilities functions.
+project_home: https://github.com/cantinilab/GRnnData
+documentation_home: https://jkobject.com/GRnnData
+publications:
+  - 10.1101/2024.07.29.605556
+install:
+  pypi: grnndata
+tags:
+  - single cell
+  - RNAseq
+  - gene networks
+  - format
+  - utilities
+license: MIT
+version: v1.0.0
+authors:
+  - jkobject (jeremie kalfon)
+test_command: pip install . && make test