diff --git a/packages/GRnnData/meta.yaml b/packages/GRnnData/meta.yaml new file mode 100644 index 0000000..0a4ebbf --- /dev/null +++ b/packages/GRnnData/meta.yaml @@ -0,0 +1,21 @@ +name: GRnnData +description: | + An onverload of anndata to more easily work with gene networks. + Allows easy conversion between anndata and grnndata and provide loads of usefull utilities functions. +project_home: https://github.com/cantinilab/GRnnData +documentation_home: https://jkobject.com/GRnnData +publications: + - 10.1101/2024.07.29.605556 +install: + pypi: grnndata +tags: + - single cell + - RNAseq + - gene networks + - format + - utilities +license: MIT +version: v1.0.0 +authors: + - jkobject (jeremie kalfon) +test_command: pip install . && make test diff --git a/packages/benGRN/meta.yaml b/packages/benGRN/meta.yaml new file mode 100644 index 0000000..2c1948f --- /dev/null +++ b/packages/benGRN/meta.yaml @@ -0,0 +1,20 @@ +name: benGRN +description: | + Benchmarking tool for gene network inference from single cell RNAseq methods. + It uses the grnndata/anndata modality and only contains biological ground truth networks +project_home: https://github.com/jkobject/benGRN +documentation_home: https://jkobject.com/benGRN +publications: + - 10.1101/2024.07.29.605556 +install: + pypi: bengrn +tags: + - single cell + - RNAseq + - gene network inference + - benchmark +license: MIT +version: v1.0.1 +authors: + - jkobject (jeremie kalfon) +test_command: pip install . && make test diff --git a/packages/scDataLoader/meta.yaml b/packages/scDataLoader/meta.yaml new file mode 100644 index 0000000..02d5a92 --- /dev/null +++ b/packages/scDataLoader/meta.yaml @@ -0,0 +1,24 @@ +name: scDataLoader +description: | + A dataloader for large single cell databases like cellxgene. + Does weighted random sampling, downloading and preprocessing. + works with anndata, zarr, and h5ad files. +project_home: https://github.com/jkobject/scDataLoader +documentation_home: https://jkobject.com/scDataLoader +publications: + - 10.1101/2024.07.29.605556 +install: + pypi: scdataloader +tags: + - dataloader + - single cell + - RNAseq + - pytorch + - lightning + - cellxgene + - preprocessing +license: MIT +version: v1.0.1 +authors: + - jkobject (jeremie kalfon) +test_command: pip install . && make test diff --git a/packages/scPRINT/meta.yaml b/packages/scPRINT/meta.yaml new file mode 100644 index 0000000..7ec8723 --- /dev/null +++ b/packages/scPRINT/meta.yaml @@ -0,0 +1,26 @@ +name: scPRINT +description: | + A single cell foundation model for Gene network inference and more... +project_home: https://github.com/cantinilab/scPRINT +documentation_home: https://jkobject.com/scPRINT +publications: + - 10.1101/2024.07.29.605556 +install: + pypi: scprint +tags: + - foundation model + - single cell + - RNAseq + - gene network inference + - denoising + - zero imputation + - label prediction + - zero shot + - embedding + - pytorch + - lightning +license: MIT +version: v1.0.12 +authors: + - jkobject (jeremie kalfon) +test_command: pip install . && make test