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test_flysight_v2_parser.py
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import datetime as dt
from pathlib import Path
from textwrap import dedent
import polars
import pytest
from polars.testing import assert_frame_equal
from pyflysight.exceptions import HeadingParseError, RawLogParseError
from pyflysight.flysight_proc import (
FlysightV2,
SensorInfo,
_calculate_derived_columns,
_parse_header,
_partition_sensor_data,
_raw_data_to_dataframe,
_split_sensor_data,
calculate_sync_delta,
parse_v2_log_directory,
parse_v2_sensor_data,
parse_v2_track_data,
)
from tests import SAMPLE_DATA_DIR
SAMPLE_SPLIT_FILE = dedent(
"""\
$UNIT,VBAT,s,volt
$DATA
$IMU,59970.376,-0.427,1.770,1.953,-0.01464,-0.00732,0.94287,25.64
"""
).splitlines()
def test_v2_data_split() -> None:
header, data = _split_sensor_data(SAMPLE_SPLIT_FILE)
assert header == ["$UNIT,VBAT,s,volt"]
assert data == ["$IMU,59970.376,-0.427,1.770,1.953,-0.01464,-0.00732,0.94287,25.64"]
def test_data_split_no_partition_raises() -> None:
with pytest.raises(RawLogParseError, match="HELLO"):
_ = _split_sensor_data(SAMPLE_SPLIT_FILE, partition_keyword="$HELLO")
SAMPLE_HEADER_ONE_SENSOR = dedent(
"""\
$FLYS,1
$VAR,FIRMWARE_VER,v2023.09.22
$VAR,DEVICE_ID,003f0033484e501420353131
$VAR,SESSION_ID,7e67d0e71a53d9d6486b0114
$COL,BARO,time,pressure,temperature
$UNIT,BARO,s,Pa,deg C
"""
).splitlines()
TRUTH_SENSOR_INFO = SensorInfo(
columns=["time", "pressure", "temperature"],
units=["s", "Pa", "deg C"],
id_="BARO",
)
def test_header_parse_one_sensor() -> None:
flysight = _parse_header(SAMPLE_HEADER_ONE_SENSOR)
assert flysight.firmware_version == "v2023.09.22"
assert flysight.device_id == "003f0033484e501420353131"
assert flysight.session_id == "7e67d0e71a53d9d6486b0114"
assert "BARO" in flysight.sensor_info
assert flysight.sensor_info["BARO"] == TRUTH_SENSOR_INFO
SAMPLE_HEADER_NO_FIRMWARE = dedent(
"""\
$FLYS,1
$VAR,DEVICE_ID,003f0033484e501420353131
$VAR,SESSION_ID,7e67d0e71a53d9d6486b0114
"""
).splitlines()
def test_header_missing_firmware_raises() -> None:
with pytest.raises(HeadingParseError, match="firmware"):
_parse_header(SAMPLE_HEADER_NO_FIRMWARE)
SAMPLE_HEADER_NO_DEVICE_ID = dedent(
"""\
$FLYS,1
$VAR,FIRMWARE_VER,v2023.09.22
$VAR,SESSION_ID,7e67d0e71a53d9d6486b0114
"""
).splitlines()
def test_header_missing_device_raises() -> None:
with pytest.raises(HeadingParseError, match="device"):
_parse_header(SAMPLE_HEADER_NO_DEVICE_ID)
SAMPLE_HEADER_NO_SESSION_ID = dedent(
"""\
$FLYS,1
$VAR,FIRMWARE_VER,v2023.09.22
$VAR,DEVICE_ID,003f0033484e501420353131
"""
).splitlines()
def test_header_missing_session_raises() -> None:
with pytest.raises(HeadingParseError, match="session"):
_parse_header(SAMPLE_HEADER_NO_SESSION_ID)
SAMPLE_HEADER_MISMATCHED_SENSOR_INFO = dedent(
"""\
$FLYS,1
$VAR,FIRMWARE_VER,v2023.09.22
$VAR,DEVICE_ID,003f0033484e501420353131
$VAR,SESSION_ID,7e67d0e71a53d9d6486b0114
$COL,BARO,time,pressure,temperature
"""
).splitlines()
def test_header_partial_missing_sensor_info_raises() -> None:
with pytest.raises(HeadingParseError, match="lacks column or unit information"):
_parse_header(SAMPLE_HEADER_MISMATCHED_SENSOR_INFO)
SAMPLE_HEADER_GNSS_INFO = dedent(
"""\
$FLYS,1
$VAR,FIRMWARE_VER,v2023.09.22
$VAR,DEVICE_ID,003f0033484e501420353131
$VAR,SESSION_ID,7e67d0e71a53d9d6486b0114
$COL,GNSS,time,lat,lon,hMSL,velN,velE,velD,hAcc,vAcc,sAcc,numSV
$UNIT,GNSS,,deg,deg,m,m/s,m/s,m/s,m,m,m/s,
"""
).splitlines()
def test_header_gnss_datetime_unit_fill() -> None:
flysight = _parse_header(SAMPLE_HEADER_GNSS_INFO)
assert "datetime" in flysight.sensor_info["GNSS"].units
SAMPLE_SENSOR_DATA_SINGLE_LINES = dedent(
"""\
$IMU,1,2,3,4
$BARO,5,6,7,8
"""
).splitlines()
def test_sensor_data_partition() -> None:
sensor_data, initial_timestamp = _partition_sensor_data(SAMPLE_SENSOR_DATA_SINGLE_LINES)
assert initial_timestamp == pytest.approx(1)
assert not (sensor_data.keys() - {"IMU", "BARO"})
assert len(sensor_data["IMU"]) == 1
assert sensor_data["IMU"][0] == pytest.approx([1, 2, 3, 4])
assert len(sensor_data["BARO"]) == 1
assert sensor_data["BARO"][0] == pytest.approx([5, 6, 7, 8])
SAMPLE_SENSOR_DATA_MULTI_LINES = dedent(
"""\
$IMU,1,2
$BARO,3,4
$IMU,5,6
"""
).splitlines()
def test_sensor_data_partition_multi_line() -> None:
sensor_data, _ = _partition_sensor_data(SAMPLE_SENSOR_DATA_MULTI_LINES)
assert not (sensor_data.keys() - {"IMU", "BARO"})
assert len(sensor_data["IMU"]) == 2
assert sensor_data["IMU"][0] == pytest.approx([1, 2])
assert sensor_data["IMU"][1] == pytest.approx([5, 6])
assert len(sensor_data["BARO"]) == 1
assert sensor_data["BARO"][0] == pytest.approx([3, 4])
DEVICE_INFO_NO_TIMESTAMP = FlysightV2(
firmware_version="abc123",
device_id="abc123",
session_id="abc123",
sensor_info={"BARO": TRUTH_SENSOR_INFO},
)
SAMPLE_GROUPED_DATA = {"BARO": [[1.0, 2.0, 3.0]]}
def test_dataframe_conversion_no_timestamp_raises() -> None:
with pytest.raises(RawLogParseError, match="timestamp"):
_raw_data_to_dataframe(SAMPLE_GROUPED_DATA, DEVICE_INFO_NO_TIMESTAMP)
DEVICE_INFO_WITH_TIMESTAMP = FlysightV2(
firmware_version="abc123",
device_id="abc123",
session_id="abc123",
sensor_info={"BARO": TRUTH_SENSOR_INFO},
first_sensor_timestamp=0.5,
)
def test_dataframe_conversion_mismatch_column_headers_raises() -> None:
sample_data = {"BARO": [[1.0, 2.0, 3.0, 4.0]]}
with pytest.raises(HeadingParseError, match="Number of column headers"):
_raw_data_to_dataframe(sample_data, DEVICE_INFO_WITH_TIMESTAMP)
def test_dataframe_conversion_no_column_headers_raises() -> None:
sample_data = {"abcd": [[1.0, 2.0, 3.0]]}
with pytest.raises(HeadingParseError, match="Could not locate"):
_raw_data_to_dataframe(sample_data, DEVICE_INFO_WITH_TIMESTAMP)
def test_dataframe_elapsed_time_derived() -> None:
parsed_sensor_data = _raw_data_to_dataframe(SAMPLE_GROUPED_DATA, DEVICE_INFO_WITH_TIMESTAMP)
df = parsed_sensor_data["BARO"]
assert "elapsed_time" in df.columns
assert df.select(polars.col("elapsed_time").first()).item() == pytest.approx(0.5)
def test_dataframe_pressure_altitude_from_baro() -> None:
parsed_sensor_data = _raw_data_to_dataframe(SAMPLE_GROUPED_DATA, DEVICE_INFO_WITH_TIMESTAMP)
df = parsed_sensor_data["BARO"]
assert "press_alt_m" in df.columns
assert df.select(polars.col("press_alt_m").first()).item() == pytest.approx(38_754.55)
assert "press_alt_ft" in df.columns
assert df.select(polars.col("press_alt_ft").first()).item() == pytest.approx(127_145.96)
def test_dataframe_conversion_row_length_mismatch_raises() -> None:
sample_data = {
"BARO": [[0.0, 1, 2, 3, 4, 5, 6, 7], [0.05, 1, 2, 3, 4, 5, 6, 7], [0.1, 1, 2, 3, 4, 5, 6]]
}
with pytest.raises(RawLogParseError) as e:
_raw_data_to_dataframe(sample_data, DEVICE_INFO_WITH_TIMESTAMP)
err_str = str(e.value)
assert "BARO" in err_str
assert "t~=0.10" in err_str
assert "contains: 7, expected: 8" in err_str
IMU_SENSOR_INFO = SensorInfo(
columns=["time", "wx", "wy", "wz", "ax", "ay", "az", "temperature"],
units=["s", "deg/s", "deg/s", "deg/s", "g", "g", "g", "deg C"],
id_="IMU",
)
IMU_INFO_WITH_TIMESTAMP = FlysightV2(
firmware_version="abc123",
device_id="abc123",
session_id="abc123",
sensor_info={"IMU": IMU_SENSOR_INFO},
first_sensor_timestamp=0.5,
)
SAMPLE_IMU_DATA = {"IMU": [[0.01, 0, 0, 0, 1, 2, 3, 26.26]]}
def test_dataframe_derived_imu_data() -> None:
parsed_sensor_data = _raw_data_to_dataframe(SAMPLE_IMU_DATA, IMU_INFO_WITH_TIMESTAMP)
df = parsed_sensor_data["IMU"]
assert "total_accel" in df.columns
assert df.select(polars.col("total_accel").first()).item() == pytest.approx(14 ** (1 / 2))
def test_dataframe_no_derived_passthrough() -> None:
# Just need a dummy df for this, passthrough shouldn't need any specific device info
df = polars.DataFrame({"a": [1, 2], "b": [3, 4]})
passthrough = _calculate_derived_columns(df, "abcd", DEVICE_INFO_WITH_TIMESTAMP)
assert_frame_equal(df, passthrough)
def test_v2_sensor_file_parsing() -> None:
sensor_filepath = SAMPLE_DATA_DIR / "24-04-20/04-20-00/SENSOR.CSV"
sensor_data, device_info = parse_v2_sensor_data(sensor_filepath)
# Actual parsing already tested upstream, don't need to repeat
assert "IMU" in sensor_data
assert device_info.device_id == "003e0038484e501420353131"
def test_v2_track_file_parsing() -> None:
track_filepath = SAMPLE_DATA_DIR / "24-04-20/04-20-00/TRACK.CSV"
track_data, device_info = parse_v2_track_data(track_filepath)
# Actual parsing already tested upstream, don't need to repeat
assert track_data.shape == (1, 13)
assert device_info.device_id == "003e0038484e501420353131"
def test_directory_pipeline_no_sensor_raises(tmp_path: Path) -> None:
track_log = tmp_path / "TRACK.CSV"
track_log.write_text("")
with pytest.raises(ValueError, match="SENSOR.CSV"):
parse_v2_log_directory(tmp_path)
def test_directory_pipeline_no_track_raises(tmp_path: Path) -> None:
track_log = tmp_path / "SENSOR.CSV"
track_log.write_text("")
with pytest.raises(ValueError, match="TRACK.CSV"):
parse_v2_log_directory(tmp_path)
def test_directory_pipeline() -> None:
data_directory = SAMPLE_DATA_DIR / "24-04-20/04-20-00"
data_log = parse_v2_log_directory(data_directory)
# Actual parsing already tested upstream, don't need to repeat
assert data_log.track_data.shape == (1, 14)
assert "IMU" in data_log.sensor_data
assert data_log.device_info.device_id == "003e0038484e501420353131"
def test_directory_pipeline_normalize_gps() -> None:
data_directory = SAMPLE_DATA_DIR / "24-04-20/04-20-00"
data_log = parse_v2_log_directory(data_directory, normalize_gps=True)
# Normalization helper tested elsewhere, just check here that the flag is being acted on
assert data_log.track_data["lat"][0] == pytest.approx(0)
assert data_log.track_data["lon"][0] == pytest.approx(0)
def test_v2_flightlog_normalize_gps() -> None:
data_directory = SAMPLE_DATA_DIR / "24-04-20/04-20-00"
# Have already tested that the coordinate is correctly parsed
data_log = parse_v2_log_directory(data_directory, normalize_gps=False)
data_log.normalize_gps()
assert data_log.track_data["lat"][0] == pytest.approx(0)
assert data_log.track_data["lon"][0] == pytest.approx(0)
def test_time_sync_delta_calculation() -> None:
track_data = polars.DataFrame(
{
"time": [dt.datetime(year=2024, month=4, day=20, tzinfo=dt.UTC)],
}
)
time_sensor = polars.DataFrame(
{
"tow": [518400],
"week": [2310],
"elapsed_time": [1.0],
}
)
track_offset = calculate_sync_delta(track_data, time_sensor)
assert track_offset == pytest.approx(1)
def test_directory_pipeline_inserts_sync_column() -> None:
data_directory = SAMPLE_DATA_DIR / "24-04-20/04-20-00"
data_log = parse_v2_log_directory(data_directory)
assert "elapsed_time_sensor" in data_log.track_data.columns
assert data_log.track_data["elapsed_time_sensor"][0] == pytest.approx(1)
def test_directory_pipeline_prefer_parsed() -> None:
data_directory = SAMPLE_DATA_DIR / "24-04-20/04-20-00"
# Deserialization already tested elsewhere, so just see that this doesn't fail
_ = parse_v2_log_directory(data_directory, prefer_processed=True)
def test_directory_pipeline_prefer_parsed_no_parsed_continues(
capsys: pytest.CaptureFixture,
) -> None:
data_directory = SAMPLE_DATA_DIR / "24-04-20/10-10-00"
_ = parse_v2_log_directory(data_directory, prefer_processed=True)
# Log parsing already tested elsewhere, so here just see if we've captured the relevant error
captured = capsys.readouterr()
assert "raw logging session" in captured.out